View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14033_high_9 (Length: 402)
Name: NF14033_high_9
Description: NF14033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14033_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 384
Target Start/End: Complemental strand, 46215559 - 46215188
Alignment:
| Q |
13 |
gagatgaagatgaaatattctctttgctttatgctgctaaattcatttttcatttttctttggtgatgaaagcgaaacaatggagtattttcgacccgtt |
112 |
Q |
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| T |
46215559 |
gagatgaagatgaaatattctctttgctt-atgctgctaaattcatttttcagttttctttggtgatgaaagcgaaacaatggagtattttcgacccgtt |
46215461 |
T |
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| Q |
113 |
ttcactgtgtaaactaacaaactcattcatccattgtcttttcaccagnnnnnnnagagtagtttttgttacccgtgttaataataaacttttt-aagnn |
211 |
Q |
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| T |
46215460 |
ttcactgtgtaaactaacaaactcattcatccattgtcttttcaccagtttttttagagtagtttttgttacctgtgttaataataaacttttttaagaa |
46215361 |
T |
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| Q |
212 |
nnnnncattggtaatagtagcatactacttttttcaatttattctccgttacatgaaaagaaaataaaaattatccaagtcttattaaatcacataggtt |
311 |
Q |
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| T |
46215360 |
aaaaacattggtaatagtagcatactacttttttcaatttattctccgttacatgaaaagaaaataaaaattatccaagtcttattaaatcacataggtt |
46215261 |
T |
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| Q |
312 |
tcgttttgtggttgatctaaatattgataatcctgttaatgttctatttttcttatgtttttcaaggaatttt |
384 |
Q |
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| T |
46215260 |
tcgttttgtggttgatctaaatattgataatcctgttaatgttctatttttcttatgtttttcaaggaatttt |
46215188 |
T |
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