View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14033_low_11 (Length: 350)
Name: NF14033_low_11
Description: NF14033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14033_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 147 - 344
Target Start/End: Complemental strand, 23266062 - 23265864
Alignment:
| Q |
147 |
ttggaatttcttttcatagcttttatgtgaatttttaaatcactaatcaatcataaagtgcttttattatatatgaaagaagaatataactttggaattt |
246 |
Q |
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| T |
23266062 |
ttggaatttcttttcatagcttttatgtgaatttttaaatcactaatcaatcataaagtgcttttattatatatgaaagaagaatataactttggaattt |
23265963 |
T |
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| Q |
247 |
cagcttttgatatagaaaatataatctattgccatccttgctta-cttgcattataagttgaaagaggtaatatagcgtctcttgtcttattcttctct |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23265962 |
cagcttttgatatagaaaatataatctattgccatccttgcttagcttgcattataagttgaaagaggtaatatagcgtctcttgtcttattcttctct |
23265864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 23251633 - 23251294
Alignment:
| Q |
19 |
gtatcactatggaacttctaaactttatgtgtttggtttaat-tttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtag |
117 |
Q |
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| T |
23251633 |
gtatcactatggaacttttaaatttaattgatttggttttacatttatttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtag |
23251534 |
T |
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| Q |
118 |
cataaattctgcatatacataggttgaactt-----ggaatttcttttcatagcttttatgtgaatttttaaatcactaatcaatcataaagtgc----- |
207 |
Q |
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| T |
23251533 |
cgtaaactctgcatatacataggttgaatttgaaaaggaatttatttttatagcttttatgtgaattattaaatcactaatcaagcgtaaagtgcatctc |
23251434 |
T |
|
| Q |
208 |
-----ttttattatatatgaaagaagaatataactttggaatttcagcttttgatatagaaaatataatctattgccatccttgctta-cttgcattata |
301 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||| | || || || |
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| T |
23251433 |
atcctttttattatatatgaaagaa-aatataattttggaatttcagctattgatatagaaaatataatctattgccatctttgcttagcctgtat--ta |
23251337 |
T |
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| Q |
302 |
agttgaaagaggtaatatagcgtctcttgtcttattcttctct |
344 |
Q |
| |
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||||||| |||||||| | |||||||||||||||||||||| |
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| T |
23251336 |
agttgaagaaggtaatacggtgtctcttgtcttattcttctct |
23251294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 23257606 - 23257386
Alignment:
| Q |
19 |
gtatcactatggaacttctaaactttatgtgtttggtttaattttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagc |
118 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23257606 |
gtatcactatggaacttctaaacttaatgtgtttggtttaattttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagc |
23257507 |
T |
|
| Q |
119 |
ataaattctgcatatacataggttgaactt-----ggaatttcttttcatagcttttatgtgaatttttaaatcactaatcaatcataaagtg------- |
206 |
Q |
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||||||||||||||||||||||||||| || ||| ||||| || |||||||||||||| ||| |||||||||||||||| | ||||||| |
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| T |
23257506 |
ataaattctgcatatacataggttgaaattgaaaaggagtttctctttatagcttttatgtggattattaaatcactaatcaagcttaaagtgcatctga |
23257407 |
T |
|
| Q |
207 |
cttttattatatatgaaagaa |
227 |
Q |
| |
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||||||||||||||||||||| |
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| T |
23257406 |
cttttattatatatgaaagaa |
23257386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 23247221 - 23246979
Alignment:
| Q |
19 |
gtatcactatggaacttctaaactttatgtgtttggtttaattttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagc |
118 |
Q |
| |
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||||||||||||||||| |||| || |||| ||| ||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23247221 |
gtatcactatggaacttttaaatttaatgtcttttgtttacttttctttttggattgtaggataggaaatgtctatactacaacctttttaattggtagc |
23247122 |
T |
|
| Q |
119 |
ataaattctgcatatacataggttgaactt-----ggaatttcttttcatagc-ttttatgtgaatttttaaatcactaatcaatcataaagtg------ |
206 |
Q |
| |
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|||||| ||||||||||||||||| || || |||||||||||| ||||| ||||||||||| | |||||||||||||| | |||| |||| |
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| T |
23247121 |
ataaatactgcatatacataggttaaaattaaaaaggaatttctttttatagctttttatgtgaa-tattaaatcactaatcgagcatatagtgcatctc |
23247023 |
T |
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| Q |
207 |
----cttttattatatatgaaagaagaatataactttggaattt |
246 |
Q |
| |
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|||||||||||||||||| |||||||||| |||||||||| |
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| T |
23247022 |
atgacttttattatatatgaaaaaagaatataattttggaattt |
23246979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 23266167 - 23266061
Alignment:
| Q |
19 |
gtatcactatggaacttctaaactttatgtgtttggtttaattttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagc |
118 |
Q |
| |
|
|||||||||||||||||||||| ||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23266167 |
gtatcactatggaacttctaaattttctttgtttggtttaactttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagc |
23266068 |
T |
|
| Q |
119 |
ataaatt |
125 |
Q |
| |
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||||||| |
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| T |
23266067 |
ataaatt |
23266061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 23283243 - 23283160
Alignment:
| Q |
19 |
gtatcactatggaacttctaaactttatgtgtttggtttaattttattttt-ggattgtagaataggaaatgtctatactacaa |
101 |
Q |
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||||| |||||||||||||||| || | | ||||||||| |||| ||||| |||||||||||| | ||||||||||||||||| |
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| T |
23283243 |
gtatccctatggaacttctaaaattgaagagtttggttttgtttttttttttggattgtagaattgaaaatgtctatactacaa |
23283160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Complemental strand, 23289586 - 23289502
Alignment:
| Q |
19 |
gtatcactatggaacttctaaactttatgtgtttggtttaattttatt--tttggattgtagaataggaaatgtctatactacaa |
101 |
Q |
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||||| ||||||||||||| ||||| | |||||||||||| |||| || ||||||||||| || | |||||||| |||||||| |
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| T |
23289586 |
gtatcgctatggaacttctgaacttgaagtgtttggtttacttttttttgtttggattgtaaaacggaaaatgtctgtactacaa |
23289502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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