View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14033_low_16 (Length: 216)
Name: NF14033_low_16
Description: NF14033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14033_low_16 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 40125190 - 40125387
Alignment:
| Q |
19 |
acttgtgcacctcagttcatgcctccacagcctcatcacaaccttgaccttcaaagcaccacaaaccataccattgccaatgacagtgttccaccttccc |
118 |
Q |
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| T |
40125190 |
acttgtgcacctcagttcataccttcacagcctcatcacaaacttgatcttcaaagcaccacaaaccataccattgccaatgacagtgttccaccttccc |
40125289 |
T |
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| Q |
119 |
ttccaatgaaaaacttcacaaacaaagacactgttgaagtgtctcctccattagtgccagtgagtactactaatagctggtatcagtactttcaagct |
216 |
Q |
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| T |
40125290 |
ttccaatgaaaaacttcacaaacaaagacactgttgaagtgtcccctccattagagccagtgagtactactaatagctggtatcagtactttcaagct |
40125387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 40092718 - 40092915
Alignment:
| Q |
19 |
acttgtgcacctcagttcatgcctccacagcctcatcacaaccttgaccttcaaagcaccacaaaccataccattgccaatgacagtgttccaccttccc |
118 |
Q |
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| T |
40092718 |
acttgtgcacctcagttcataccttcacagcctcatcacaaacttgatcttcaaagcaccacaaaccataccattgccaatgacagtgttccaccttccc |
40092817 |
T |
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| Q |
119 |
ttccaatgaaaaacttcacaaacaaagacactgttgaagtgtctcctccattagtgccagtgagtactactaatagctggtatcagtactttcaagct |
216 |
Q |
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| T |
40092818 |
ttccaatgaaaaacttcacaaacaaagacagtgttgaagtgtcccctccattagagccagtgagtactactaatagctggtatcagtactttcaagct |
40092915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 40121541 - 40121738
Alignment:
| Q |
19 |
acttgtgcacctcagttcatgcctccacagcctcatcacaaccttgaccttcaaagcaccacaaaccataccattgccaatgacagtgttccaccttccc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| || | | |||| ||||| | |
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| T |
40121541 |
acttgtgcacctcagttcatgcctccacagcctcatcacaaccttgaccttcaaagcaccacagaccataccactgctaagaatattgtt---ccttctc |
40121637 |
T |
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| Q |
119 |
ttccaatgaaaaacttcacaaacaaagacactgttgaagtgtctcctccattagtgccagtgag---tactactaatagctggtatcagtactttcaagc |
215 |
Q |
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| T |
40121638 |
ttccaatgaaaaatctatcaagcagagacaatgttgaagtgtcctctccattagtgccggtgagcactactactaccagctggtatcaatactttcaagc |
40121737 |
T |
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