View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14033_low_2 (Length: 692)

Name: NF14033_low_2
Description: NF14033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14033_low_2
NF14033_low_2
[»] chr2 (1 HSPs)
chr2 (30-674)||(8931761-8932405)
[»] chr4 (3 HSPs)
chr4 (464-546)||(49443576-49443658)
chr4 (493-554)||(50892220-50892281)
chr4 (493-554)||(48751378-48751439)
[»] chr8 (2 HSPs)
chr8 (493-554)||(31584881-31584942)
chr8 (485-541)||(18332040-18332096)
[»] chr3 (2 HSPs)
chr3 (473-554)||(36198899-36198980)
chr3 (496-533)||(23548584-23548621)
[»] chr1 (1 HSPs)
chr1 (471-554)||(43710570-43710653)
[»] chr5 (1 HSPs)
chr5 (464-554)||(43427779-43427869)
[»] chr7 (1 HSPs)
chr7 (472-552)||(253058-253137)


Alignment Details
Target: chr2 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 30 - 674
Target Start/End: Complemental strand, 8932405 - 8931761
Alignment:
Q  30 tgagatgaaagaatgatgtgtctccaatgaagcccatggatagaatttccttcataatttgagctcaaaatgaacttctgttctggaatccttttaaaca 129  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8932405 tgagatgaaagaatgatgtgtctccaatgaagcctatggacagaatttccttcataatttgagctcaaaatgaacttctgttctggaatccttttaaaca 8932306  T
Q  130 caaattgaaaattttggatagttctgcagctgttttcccatgaaattctaccataagcaaattatttctgaatattannnnnnngattgagtttccaata 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  8932305 caaattgaaaattttggatagttctgcagctgttttcccatgaaattctaccataagcaaattatttctgaatattatttttttgattgagtttccaata 8932206  T
Q  230 attaatttcacaaaccaaagattagtctattgttcttgttctcttgctatcaaatgaatatgttgttgcaatgttttgctcccatgataacttgaaaagg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8932205 attaatttcacaaaccaaagattagtctattgttcttgttctcttgctatcaaatgaatatgttgttgcaatgttttgctcccatgataacttgaaaagg 8932106  T
Q  330 tttgtttgataatttattctatcaaatgctgcttgtattgaccattttacagcgaggttttgatttgctacattgagtttatatgtttagtagacatggt 429  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8932105 tttgtttgattatttattctatcaaatgctgcttgtattgaccattttacagcgaggttttgatttgctacattgagtttatttgtttagtagacatggt 8932006  T
Q  430 ttgctgtcttactttgatgtaatccaattattggactaataaccattttacagccgtcccagtggggatttgaactcagcaccttgcggttacaatgcta 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8932005 ttgctgtcttactttgatgtaatccaattattggactaataaccattttacagccgtcccagtggggatttgaactcagcaccttgcggttacaatgcta 8931906  T
Q  530 aactcttaccaccgagttagcaccttgaggttacagtgcatactttatgctgagatgttttcatgaaagcaggtatgaagtgccgaaccacgttcactct 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||    
T  8931905 aactcttaccaccgagttagcaccttgaggttacagtgcatactttatgctgagatgttttcatgaatgcaggtatgaggtgccgaaccacgttcaatct 8931806  T
Q  630 gtgcgttatttttatctctttttggtgtgtactcgcatgtgttcc 674  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||    
T  8931805 gtgcgttatttttatcttttttcggtgtgtactcgcatgtgttcc 8931761  T

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Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 464 - 546
Target Start/End: Original strand, 49443576 - 49443658
Alignment:
Q  464 actaataaccattttacagccgtcccagtggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagt 546  Q
    |||||||||||||||||| ||||||| | |||||||||||||  | |||||| |||||||| |||||||||||||||| ||||    
T  49443576 actaataaccattttacaaccgtccccgaggggatttgaactttgtaccttgaggttacaaggctaaactcttaccacagagt 49443658  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 493 - 554
Target Start/End: Complemental strand, 50892281 - 50892220
Alignment:
Q  493 ggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagttagcacct 554  Q
    ||||||| ||||||||||||||| |||||||| ||||| |||||||||| ||| ||||||||    
T  50892281 ggggattagaactcagcaccttgaggttacaaggctaagctcttaccactgagctagcacct 50892220  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 554
Target Start/End: Original strand, 48751378 - 48751439
Alignment:
Q  493 ggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagttagcacct 554  Q
    ||||||| |||||||||| |||| |||||||||||||| ||||| ||||  || ||||||||    
T  48751378 ggggattcgaactcagcaacttgaggttacaatgctaagctcttgccacttagctagcacct 48751439  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 493 - 554
Target Start/End: Complemental strand, 31584942 - 31584881
Alignment:
Q  493 ggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagttagcacct 554  Q
    |||||||||||||||| |||||| |||||||||||||| |||||||||  ||| ||||||||    
T  31584942 ggggatttgaactcagtaccttgaggttacaatgctaagctcttaccattgagctagcacct 31584881  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 485 - 541
Target Start/End: Complemental strand, 18332096 - 18332040
Alignment:
Q  485 gtcccagtggggatttgaactcagcaccttgcggttacaatgctaaactcttaccac 541  Q
    ||||||| ||| |||| ||||||| |||||| |||||||||||||| ||||| ||||    
T  18332096 gtcccagagggtatttaaactcagtaccttgaggttacaatgctaagctcttgccac 18332040  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 473 - 554
Target Start/End: Original strand, 36198899 - 36198980
Alignment:
Q  473 cattttacagccgtcccagtggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagttagcacct 554  Q
    ||||||||| || |||| | |||||||||||||||| |||||| |||||||| ||||| ||||||||||  || ||||||||    
T  36198899 cattttacaaccatccccgaggggatttgaactcagtaccttgaggttacaaggctaagctcttaccactaagctagcacct 36198980  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 533
Target Start/End: Complemental strand, 23548621 - 23548584
Alignment:
Q  496 gatttgaactcagcaccttgcggttacaatgctaaact 533  Q
    |||||||||||||||||| | |||||||||||||||||    
T  23548621 gatttgaactcagcacctcgaggttacaatgctaaact 23548584  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 554
Target Start/End: Complemental strand, 43710653 - 43710570
Alignment:
Q  471 accattttacagccgtcccagtggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagttagcacct 554  Q
    ||||||| ||| | ||||| | ||||||| ||||||| ||||| | |||||||| ||||| |||||||||||| | ||||||||    
T  43710653 accatttcacaactgtccccgaggggattcgaactcaacacctcggggttacaaggctaatctcttaccaccgtgctagcacct 43710570  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 464 - 554
Target Start/End: Complemental strand, 43427869 - 43427779
Alignment:
Q  464 actaataaccattttacagccgtcccagtggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagttagcacct 554  Q
    |||||||||||||||||| ||||  |   ||||||||||||||    ||||| |||||||| || ||||||||||||| ||| ||||||||    
T  43427869 actaataaccattttacaaccgtatccaaggggatttgaactccctcccttgaggttacaaggccaaactcttaccactgagctagcacct 43427779  T

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Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 472 - 552
Target Start/End: Original strand, 253058 - 253137
Alignment:
Q  472 ccattttacagccgtcccagtggggatttgaactcagcaccttgcggttacaatgctaaactcttaccaccgagttagcac 552  Q
    |||||||||| ||||||| | |||||||||||||  | |||||  |||||||| ||||| |||||||||| ||| ||||||    
T  253058 ccattttacaaccgtccccg-ggggatttgaactttgtaccttaaggttacaaggctaagctcttaccactgagctagcac 253137  T

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