View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14033_low_3 (Length: 656)
Name: NF14033_low_3
Description: NF14033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14033_low_3 |
 | |
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| [»] scaffold0710 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 551; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 18 - 650
Target Start/End: Original strand, 51807415 - 51808034
Alignment:
| Q |
18 |
acatgctgacctcaattaatcatgagctagttgttggaactccaatcatatatcatcagtttcaaaattcgattaacagatacttacttggttctgcctc |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51807415 |
acatgctgacctcaattaatcatgagctagttgttggaactccaatcatatatcatcagtttcaaaattcgattaacagatacttacttggttctgcctc |
51807514 |
T |
|
| Q |
118 |
tcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactttcttttccttgacgacagacgaatcatgaatatcaaatttcgctaagtattga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
51807515 |
tcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactttcttttccttgac---agatgaatcatgaatatcaaatttcgctaagtattga |
51807611 |
T |
|
| Q |
218 |
tggttttaccaacatatatagagtgctttattgtttcaggtttaacaaattcgaacaagaaaagacttgctaggaaggctgatagtctctcacaaagagt |
317 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51807612 |
tggttttaccaacata----gagtgctttattgtttcaggtttaacaaattcgaacaagaaaagacttgctaggaaggctgatagtctctcacaaagagt |
51807707 |
T |
|
| Q |
318 |
ccaagaacacggtgagtacccttgtaagacttagatgtgtttcctagatatatggtataatatacgaaaaccattttccatttctgtgtagtatctatat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51807708 |
ccaagaacacggtgagtacccttgtaagacttagatgtgtttcctagatatatggtataatatacgaaaaccattttccatttctgtgtagtatctatat |
51807807 |
T |
|
| Q |
418 |
cagcttaactcctcttgcagttgctagttgagttgcgcgtatctaattctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatcta |
517 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51807808 |
cagctttactcctc------ttgctagttgagttgcgcatatctaattctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatcta |
51807901 |
T |
|
| Q |
518 |
aaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagag |
617 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51807902 |
aaacaataaagagaactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagag |
51808001 |
T |
|
| Q |
618 |
gctatcaaaagtttcgcagtattatctacccac |
650 |
Q |
| |
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||||||||||||||| |||| ||||||| |||| |
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| T |
51808002 |
gctatcaaaagtttcacagtgttatctatccac |
51808034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 72 - 348
Target Start/End: Original strand, 51779766 - 51780046
Alignment:
| Q |
72 |
atcagtttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactttcttttc |
171 |
Q |
| |
|
|||||||||||| |||||| ||||||||| |||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51779766 |
atcagtttcaaagttcgataaacagatacatacttgattctgcctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcttttc |
51779865 |
T |
|
| Q |
172 |
cttgacgacagacgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgctttattgtttcaggtttaacaaattcga |
271 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| | |
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| T |
51779866 |
cttgacgacagacgaatcatgaacatctaatttcgctaggtattgaatgttttacca----atatagagtgctttattgtttcaggtttaacaaattcaa |
51779961 |
T |
|
| Q |
272 |
acaagaaaagactt----gctaggaaggctgatagtctctcacaaagagtccaagaacacg----gtgagtacccttgtaagact |
348 |
Q |
| |
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|||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
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| T |
51779962 |
acaagaaaaggcttgctagctaggaaggctgatagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact |
51780046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 37 - 361
Target Start/End: Original strand, 51771858 - 51772170
Alignment:
| Q |
37 |
tcatgagctagttgttggaactccaatcatatatcatcagtttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatcca |
136 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | ||||||| |||||||| |||||||||||||||||| |||| ||||||||||||| ||||||||| |
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| T |
51771858 |
tcatgagctagtttctggaactccaatcatatttgatcagttccaaaattccgttaacagatacttacttgattctacctctcatcaatgtcaatatcca |
51771957 |
T |
|
| Q |
137 |
tccaagcatcaaagcaaaagtaagactttcttttccttgacgacagacgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacatatat |
236 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||||| || |||||||||||||| ||| | | ||||||||||||||||||| ||| |
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| T |
51771958 |
tccaaacatcaaagcaaaagtaagactttcatttcctttac---agacgaatcatgaaaatcgatct-------gtattgatggttttaccaa----tat |
51772043 |
T |
|
| Q |
237 |
agagtgcttt--attgtttcaggtttaacaaattcgaacaagaaaagacttgctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagt |
334 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
51772044 |
agagtgctttttattgtttcaggtttaacaaattcgaacaagaaaaggcttgctagaaaggctgatagtctctcacaaaaagtccaagaacatggtgagt |
51772143 |
T |
|
| Q |
335 |
acccttgtaagacttagatgtgtttcc |
361 |
Q |
| |
|
|||||||||||||| |||||||||||| |
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|
| T |
51772144 |
acccttgtaagactgagatgtgtttcc |
51772170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 456 - 644
Target Start/End: Original strand, 51803887 - 51804075
Alignment:
| Q |
456 |
gtatctaattctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaatt |
555 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
51803887 |
gtatctaattctctttatataactctgaaaaatttcagtgagatcgggagcaaacatatctaaaacaataaagaggacgttgaacttaggggctcaaatt |
51803986 |
T |
|
| Q |
556 |
cttcaaatgggtggagtggagaaagtgtttacgcaatattttagtgtgacagaaggagagaggctatcaaaagtttcgcagtattatct |
644 |
Q |
| |
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|||||||||||||||||||||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
51803987 |
cttcaaatgggtggagtggagaaaatgtttaggcagtattttagtgtgagagaaggagagaggctatcaaaagtttcgcagtgttatct |
51804075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 485 - 604
Target Start/End: Original strand, 51772294 - 51772413
Alignment:
| Q |
485 |
aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt |
584 |
Q |
| |
|
|||||||||| ||| || |||||||||| ||| ||||||| ||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
51772294 |
aaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattcttcaagtgggtggagtggagaaagtgtt |
51772393 |
T |
|
| Q |
585 |
tacgcaatattttagtgtga |
604 |
Q |
| |
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|| || ||||||||||||| |
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| T |
51772394 |
tatgcggtattttagtgtga |
51772413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 485 - 604
Target Start/End: Original strand, 51780160 - 51780279
Alignment:
| Q |
485 |
aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt |
584 |
Q |
| |
|
|||||||| | ||| | ||||||||||| ||| ||||||||| ||||| ||||||||||||||| |||||||| || ||||||||||||| ||| | || |
|
|
| T |
51780160 |
aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggagtggataaattttt |
51780259 |
T |
|
| Q |
585 |
tacgcaatattttagtgtga |
604 |
Q |
| |
|
|| ||| ||||||||||||| |
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|
| T |
51780260 |
tatgcactattttagtgtga |
51780279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 289 - 349
Target Start/End: Original strand, 51803793 - 51803853
Alignment:
| Q |
289 |
aggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagactt |
349 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| |||||||||||| ||||||||| |
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|
| T |
51803793 |
aggaaggccgatagtctctcacaaagagttcaagaacatggtgagtaccctagtaagactt |
51803853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 483 - 586
Target Start/End: Original strand, 51761302 - 51761406
Alignment:
| Q |
483 |
aaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagctta-ggggctcaaattcttcaaatgggtggagtggagaaagt |
581 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||| ||||||||||||||| || || | ||||||| ||||||| || |||||| |||||||||| | |
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|
| T |
51761302 |
aaaaatttcagtgagagtgggagaaaacatatcagaaacaataaagaggaagttaagtacagggggctcgaattcttgaagtgggtgaagtggagaaaat |
51761401 |
T |
|
| Q |
582 |
gttta |
586 |
Q |
| |
|
||||| |
|
|
| T |
51761402 |
gttta |
51761406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 51803593 - 51803689
Alignment:
| Q |
77 |
tttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactttcttttcct |
173 |
Q |
| |
|
|||||||| || |||||||||||||||||| ||||||| |||||||||| ||| | || |||| || |||| ||||||||| ||||| ||||||| |
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| T |
51803593 |
tttcaaaaatcagttaacagatacttacttgattctgccactcatcaatgtcaactttcaaccaaacaacaaaacaaaagtaaaactttattttcct |
51803689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 72 - 348
Target Start/End: Original strand, 6408 - 6688
Alignment:
| Q |
72 |
atcagtttcaaaattcgattaacagatacttacttggttctgcctctcatcaatgccaatatccatccaagcatcaaagcaaaagtaagactttcttttc |
171 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6408 |
atcagtttcaaaattcgattaacagatacatacttgattctgcctctcatcaatgtcaatatccatccaaacatcaaagcaaaagtaagactttcttttc |
6507 |
T |
|
| Q |
172 |
cttgacgacagacgaatcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgctttattgtttcaggtttaacaaattcga |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6508 |
cttgacgacagacgaatcatgaatatcaaatttcgctaggtattgaatgttttacca----atatagagtgctttattgtttcaggtttaacaaattcaa |
6603 |
T |
|
| Q |
272 |
acaagaaaagactt----gctaggaaggctgatagtctctcacaaagagtccaagaacacg----gtgagtacccttgtaagact |
348 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
|
|
| T |
6604 |
acaagaaaaggcttgctagctaggaaggctgatagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact |
6688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 485 - 604
Target Start/End: Original strand, 6802 - 6921
Alignment:
| Q |
485 |
aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattcttcaaatgggtggagtggagaaagtgtt |
584 |
Q |
| |
|
|||||||| | ||| | ||||||||||| ||| ||||||||| ||||| ||||||||||||||| |||||||| || ||||||||||||| ||| | || |
|
|
| T |
6802 |
aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctttaagtgggtggagtggataaattttt |
6901 |
T |
|
| Q |
585 |
tacgcaatattttagtgtga |
604 |
Q |
| |
|
|| ||| ||||||||||||| |
|
|
| T |
6902 |
tatgcactattttagtgtga |
6921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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