View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14033_low_4 (Length: 612)
Name: NF14033_low_4
Description: NF14033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14033_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 8019446 - 8019142
Alignment:
| Q |
18 |
caaagatgctaaaaaagaccctgatctcacgtgtttcccaagtattttaactaatgaaacgtttactttttcaatttcagtcgactgatattgtaagtga |
117 |
Q |
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| T |
8019446 |
caaagatgctaaaaaagaccctgatctcacgtgtttcccaagtattttaactaatgaagtgtttactttttcaacttcagtcgactgatattgtaagtga |
8019347 |
T |
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| Q |
118 |
acctaattcacctttgaacgcaagatgatggaggcaacatctaatctttttcgattacaattaagattatatattatagtcttatggttttatatcaaat |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8019346 |
acctaattcacctttgaacgcgagatgatggaggcaacatctaatctttttcgattacaattaagattatatattatagtcttatggttttatatcaaat |
8019247 |
T |
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| Q |
218 |
atcaaacaatacttggtacggtgtcgaatttgttatttgggagtttgaacaaagagtgatattaattgtatgtttaactgtgatgatatcccttatagac |
317 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
8019246 |
atcaaacaatacttggtacgatgtcgaatttgttatttgggaggttgaac-aagagtgatattaattgtatgtttagttgtgatgatatcccttatagcc |
8019148 |
T |
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| Q |
318 |
gaagac |
323 |
Q |
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|||||| |
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| T |
8019147 |
gaagac |
8019142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 437 - 612
Target Start/End: Complemental strand, 8019032 - 8018857
Alignment:
| Q |
437 |
gaaggaatgttaatgtattggcatgtgagcataacttagttgatagctgtaaggataatattatgcatgagttagagttcgaatctcaaactctccattt |
536 |
Q |
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| T |
8019032 |
gaaggaatgttaatgtgttggcatgtgagcataacttagttgatagctgtaaggataatattatgcatgggttagagttcgaatctcaaactcaacattt |
8018933 |
T |
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| Q |
537 |
ctctatatttaaaatgtgtaaggtccaacaattagactacttgaccaaatcaaaaaatatattaatacattaaagt |
612 |
Q |
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| T |
8018932 |
ctctatatttaaaatgtgtaaggtccaacaattagactacttgaccaaatcaaaaaatatattaatacattaaagt |
8018857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 535 - 581
Target Start/End: Complemental strand, 5195138 - 5195092
Alignment:
| Q |
535 |
ttctctatatttaaaatgtgtaaggtccaacaattagactacttgac |
581 |
Q |
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| T |
5195138 |
ttctctatatttaaaatgtgtgagttccaactactagactacttgac |
5195092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 585
Target Start/End: Complemental strand, 45721765 - 45721715
Alignment:
| Q |
535 |
ttctctatatttaaaatgtgtaaggtccaacaattagactacttgaccaaa |
585 |
Q |
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| T |
45721765 |
ttctctataattaaaatgtgttagttccaactattagactacttgaccaaa |
45721715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 323
Target Start/End: Complemental strand, 56101698 - 56101625
Alignment:
| Q |
249 |
gttatttgggagtttgaacaaagagtgatattaattgtatgtttaactgtgatgatatcccttatagacgaagac |
323 |
Q |
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| T |
56101698 |
gttatttgggaagttgaacaa-gagtgatattagttgcatgtttagttctgatgatatcccttttagaggaagac |
56101625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 529 - 578
Target Start/End: Complemental strand, 25994571 - 25994522
Alignment:
| Q |
529 |
ctccatttctctatatttaaaatgtgtaaggtccaacaattagactactt |
578 |
Q |
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| T |
25994571 |
ctccatttctctatatttaaaatgtgtaagctctaactactagactactt |
25994522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 513 - 581
Target Start/End: Complemental strand, 42433107 - 42433039
Alignment:
| Q |
513 |
gttcgaatctcaaactctccatttctctatatttaaaatgtgtaaggtccaacaattagactacttgac |
581 |
Q |
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||||||| |||| || || |||||||| |||||||||||||||||| || ||| | || |||||||||| |
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| T |
42433107 |
gttcgaacctcagacacttcatttctccatatttaaaatgtgtaagctctaaccactaaactacttgac |
42433039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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