View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14033_low_6 (Length: 566)

Name: NF14033_low_6
Description: NF14033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14033_low_6
NF14033_low_6
[»] scaffold0185 (2 HSPs)
scaffold0185 (21-534)||(4133-4644)
scaffold0185 (24-111)||(3893-3980)
[»] scaffold0048 (3 HSPs)
scaffold0048 (390-534)||(64519-64666)
scaffold0048 (391-534)||(51201-51348)
scaffold0048 (136-174)||(62432-62470)
[»] chr3 (43 HSPs)
chr3 (21-111)||(52552952-52553042)
chr3 (21-142)||(9266968-9267089)
chr3 (24-137)||(45969913-45970026)
chr3 (21-111)||(14161895-14161985)
chr3 (20-132)||(16722254-16722366)
chr3 (20-111)||(14262060-14262151)
chr3 (17-144)||(16721982-16722109)
chr3 (21-111)||(21633160-21633250)
chr3 (21-137)||(14262300-14262416)
chr3 (21-137)||(30500305-30500420)
chr3 (21-132)||(43572392-43572503)
chr3 (21-75)||(4204768-4204822)
chr3 (20-130)||(14162134-14162243)
chr3 (21-111)||(20853960-20854049)
chr3 (23-132)||(14171852-14171961)
chr3 (20-111)||(19112788-19112880)
chr3 (21-92)||(5800648-5800719)
chr3 (20-111)||(5800868-5800958)
chr3 (36-111)||(19720357-19720432)
chr3 (20-143)||(45058754-45058876)
chr3 (21-75)||(14171646-14171700)
chr3 (21-91)||(21632940-21633010)
chr3 (21-111)||(33372430-33372520)
chr3 (21-110)||(19113029-19113118)
chr3 (17-144)||(35995938-35996062)
chr3 (24-132)||(49986530-49986639)
chr3 (20-111)||(30500067-30500156)
chr3 (20-75)||(15328723-15328778)
chr3 (23-137)||(11003730-11003844)
chr3 (21-75)||(20853756-20853810)
chr3 (21-111)||(35741849-35741938)
chr3 (21-75)||(43572655-43572709)
chr3 (21-75)||(47575333-47575387)
chr3 (22-75)||(33372669-33372722)
chr3 (25-137)||(45970183-45970296)
chr3 (21-73)||(45003558-45003610)
chr3 (24-140)||(47575539-47575654)
chr3 (21-132)||(49986792-49986903)
chr3 (20-75)||(52552752-52552807)
chr3 (21-67)||(35995746-35995792)
chr3 (21-75)||(45003760-45003814)
chr3 (47-111)||(24490209-24490273)
chr3 (21-53)||(52552852-52552884)
[»] chr5 (33 HSPs)
chr5 (21-132)||(23979165-23979276)
chr5 (21-132)||(24837433-24837544)
chr5 (21-110)||(20709235-20709326)
chr5 (20-91)||(14144164-14144235)
chr5 (20-111)||(29445069-29445159)
chr5 (21-111)||(6817147-6817236)
chr5 (21-111)||(7126181-7126271)
chr5 (21-111)||(22571101-22571191)
chr5 (21-111)||(24074327-24074417)
chr5 (20-110)||(31799665-31799755)
chr5 (25-137)||(14143900-14144011)
chr5 (21-137)||(17762281-17762396)
chr5 (21-132)||(14411700-14411811)
chr5 (21-132)||(24837172-24837283)
chr5 (20-130)||(7125923-7126032)
chr5 (20-106)||(18336719-18336805)
chr5 (21-111)||(41001617-41001706)
chr5 (21-132)||(17762546-17762657)
chr5 (21-75)||(4919050-4919104)
chr5 (21-132)||(993753-993861)
chr5 (20-92)||(24074565-24074637)
chr5 (24-111)||(6817388-6817475)
chr5 (20-75)||(27159050-27159105)
chr5 (21-91)||(29444850-29444920)
chr5 (21-110)||(31799904-31799992)
chr5 (21-73)||(994010-994062)
chr5 (21-75)||(18336528-18336582)
chr5 (25-75)||(24650760-24650810)
chr5 (17-75)||(27159217-27159275)
chr5 (21-111)||(30512312-30512401)
chr5 (21-111)||(30552652-30552741)
chr5 (23-111)||(41001380-41001465)
chr5 (23-92)||(20709478-20709546)
[»] chr4 (37 HSPs)
chr4 (21-132)||(34063985-34064096)
chr4 (22-111)||(26252502-26252591)
chr4 (20-111)||(37012731-37012822)
chr4 (21-111)||(9516634-9516724)
chr4 (21-111)||(9619004-9619094)
chr4 (23-137)||(9619245-9619359)
chr4 (21-111)||(15640740-15640829)
chr4 (21-111)||(38574232-38574322)
chr4 (21-132)||(31090063-31090175)
chr4 (17-73)||(34064242-34064298)
chr4 (20-92)||(48579909-48579981)
chr4 (24-111)||(35376187-35376273)
chr4 (26-132)||(9396968-9397073)
chr4 (17-75)||(13132201-13132259)
chr4 (21-111)||(46046688-46046778)
chr4 (21-132)||(3018014-3018126)
chr4 (20-75)||(18713223-18713278)
chr4 (21-111)||(9516874-9516964)
chr4 (25-75)||(15640983-15641033)
chr4 (21-111)||(35376392-35376481)
chr4 (21-75)||(38574028-38574082)
chr4 (21-110)||(4355907-4355995)
chr4 (24-111)||(31943973-31944061)
chr4 (27-75)||(48260021-48260069)
chr4 (20-63)||(4356144-4356187)
chr4 (21-75)||(9396759-9396813)
chr4 (25-74)||(7819075-7819124)
chr4 (24-111)||(37012974-37013060)
chr4 (21-75)||(3273884-3273938)
chr4 (21-75)||(13132001-13132055)
chr4 (21-75)||(26252328-26252382)
chr4 (21-91)||(31090325-31090395)
chr4 (21-75)||(36888944-36888998)
chr4 (21-75)||(48580130-48580184)
chr4 (20-92)||(3018275-3018345)
chr4 (21-65)||(3273692-3273736)
chr4 (43-137)||(41946963-41947054)
[»] chr1 (35 HSPs)
chr1 (20-130)||(20995931-20996040)
chr1 (21-137)||(4906960-4907076)
chr1 (21-111)||(4907226-4907316)
chr1 (21-143)||(24467621-24467742)
chr1 (21-111)||(24467891-24467981)
chr1 (21-138)||(39711336-39711453)
chr1 (21-132)||(33628693-33628804)
chr1 (26-111)||(48072230-48072315)
chr1 (21-137)||(18462284-18462399)
chr1 (21-137)||(52058272-52058388)
chr1 (25-132)||(34749373-34749480)
chr1 (21-110)||(8293071-8293161)
chr1 (21-111)||(39711097-39711186)
chr1 (21-130)||(33628954-33629063)
chr1 (20-111)||(17606571-17606660)
chr1 (23-111)||(39826312-39826400)
chr1 (21-91)||(39826094-39826164)
chr1 (21-75)||(39970706-39970760)
chr1 (21-111)||(48071985-48072075)
chr1 (21-75)||(52058071-52058125)
chr1 (21-65)||(7473862-7473906)
chr1 (21-137)||(29696822-29696937)
chr1 (24-143)||(30299224-30299342)
chr1 (21-92)||(30299495-30299566)
chr1 (21-75)||(17606368-17606422)
chr1 (21-75)||(34749197-34749251)
chr1 (17-75)||(39970905-39970963)
chr1 (21-110)||(30252162-30252251)
chr1 (25-92)||(8292847-8292914)
chr1 (24-75)||(18462551-18462602)
chr1 (21-111)||(17501994-17502083)
chr1 (21-111)||(42510039-42510128)
chr1 (21-91)||(43539391-43539461)
chr1 (17-53)||(20995751-20995787)
chr1 (28-132)||(29696568-29696671)
[»] chr8 (26 HSPs)
chr8 (21-137)||(10108368-10108484)
chr8 (20-111)||(14820557-14820648)
chr8 (17-132)||(5554872-5554987)
chr8 (20-111)||(10108633-10108724)
chr8 (20-130)||(21147941-21148052)
chr8 (21-111)||(42113009-42113098)
chr8 (23-124)||(42606019-42606120)
chr8 (21-137)||(7689787-7689903)
chr8 (20-111)||(5555132-5555223)
chr8 (21-132)||(14820298-14820408)
chr8 (23-142)||(30789773-30789892)
chr8 (21-111)||(10171407-10171497)
chr8 (27-130)||(26136690-26136793)
chr8 (21-132)||(43851668-43851778)
chr8 (21-110)||(26532807-26532897)
chr8 (21-111)||(30789532-30789621)
chr8 (20-75)||(14767567-14767622)
chr8 (21-111)||(17622914-17623001)
chr8 (24-75)||(17623154-17623205)
chr8 (21-75)||(22494648-22494702)
chr8 (24-111)||(43481581-43481669)
chr8 (25-111)||(2583588-2583675)
chr8 (21-132)||(7689527-7689637)
chr8 (21-111)||(26136949-26137038)
chr8 (21-75)||(42113248-42113302)
chr8 (21-132)||(18044093-18044202)
[»] chr7 (35 HSPs)
chr7 (21-137)||(41600222-41600338)
chr7 (21-132)||(23704925-23705035)
chr7 (21-110)||(25772595-25772684)
chr7 (21-132)||(28218427-28218538)
chr7 (21-110)||(20419561-20419650)
chr7 (21-137)||(28218176-28218293)
chr7 (21-132)||(12006804-12006915)
chr7 (21-132)||(23383764-23383875)
chr7 (21-132)||(48672543-48672654)
chr7 (23-132)||(20963760-20963868)
chr7 (23-75)||(7658031-7658083)
chr7 (21-132)||(20419800-20419912)
chr7 (21-132)||(38879726-38879838)
chr7 (21-132)||(20458955-20459065)
chr7 (21-111)||(20963518-20963609)
chr7 (21-92)||(24195060-24195131)
chr7 (21-111)||(1250470-1250560)
chr7 (21-111)||(6465879-6465968)
chr7 (21-111)||(10409638-10409727)
chr7 (22-132)||(16995203-16995312)
chr7 (21-132)||(23383502-23383614)
chr7 (21-132)||(23704665-23704775)
chr7 (21-111)||(20458716-20458805)
chr7 (28-137)||(33162806-33162916)
chr7 (21-75)||(38879988-38880042)
chr7 (21-75)||(44816895-44816949)
chr7 (21-91)||(48648306-48648375)
chr7 (21-75)||(48672339-48672393)
chr7 (21-88)||(24194910-24194978)
chr7 (21-132)||(12006544-12006654)
chr7 (21-75)||(25772423-25772477)
chr7 (21-111)||(41599982-41600072)
chr7 (21-75)||(48648493-48648547)
chr7 (17-74)||(10409435-10409492)
chr7 (28-108)||(7842467-7842546)
[»] chr2 (28 HSPs)
chr2 (21-132)||(23806216-23806327)
chr2 (21-132)||(42670983-42671094)
chr2 (21-111)||(26236151-26236241)
chr2 (21-144)||(19251462-19251584)
chr2 (24-111)||(39878126-39878213)
chr2 (21-111)||(17463355-17463445)
chr2 (21-111)||(26135841-26135931)
chr2 (23-92)||(20499011-20499080)
chr2 (26-111)||(23854712-23854797)
chr2 (20-75)||(22263251-22263306)
chr2 (21-137)||(22263455-22263573)
chr2 (21-132)||(26236359-26236469)
chr2 (21-111)||(19251734-19251823)
chr2 (25-132)||(13254500-13254607)
chr2 (21-132)||(17850590-17850700)
chr2 (21-132)||(20498750-20498859)
chr2 (20-75)||(26560614-26560669)
chr2 (28-111)||(30959943-30960025)
chr2 (20-111)||(33290073-33290164)
chr2 (21-143)||(17850850-17850972)
chr2 (21-75)||(23854930-23854984)
chr2 (21-111)||(30390483-30390573)
chr2 (24-132)||(34548577-34548684)
chr2 (21-111)||(15106091-15106181)
chr2 (21-75)||(15106331-15106385)
chr2 (21-111)||(21482144-21482233)
chr2 (55-111)||(21481025-21481081)
chr2 (27-75)||(26136087-26136135)
[»] chr6 (18 HSPs)
chr6 (21-141)||(19284124-19284243)
chr6 (21-132)||(9481185-9481296)
chr6 (21-132)||(26385281-26385392)
chr6 (21-111)||(32017768-32017857)
chr6 (21-110)||(18500340-18500428)
chr6 (21-137)||(24732202-24732317)
chr6 (24-75)||(17142737-17142788)
chr6 (24-111)||(3230129-3230216)
chr6 (20-75)||(9481445-9481500)
chr6 (25-91)||(9154924-9154990)
chr6 (21-75)||(33714547-33714601)
chr6 (21-131)||(10321737-10321844)
chr6 (23-75)||(10321997-10322049)
chr6 (36-75)||(30458961-30459000)
chr6 (23-68)||(14680949-14680994)
chr6 (21-74)||(30618023-30618076)
chr6 (24-132)||(26385541-26385649)
chr6 (24-75)||(30459168-30459217)
[»] scaffold0141 (1 HSPs)
scaffold0141 (21-132)||(8586-8697)
[»] scaffold0117 (1 HSPs)
scaffold0117 (23-111)||(12248-12336)
[»] scaffold0809 (2 HSPs)
scaffold0809 (21-75)||(1470-1524)
scaffold0809 (21-66)||(1674-1719)
[»] scaffold0449 (2 HSPs)
scaffold0449 (21-111)||(7250-7340)
scaffold0449 (24-111)||(7466-7554)
[»] scaffold0352 (1 HSPs)
scaffold0352 (20-109)||(4693-4782)
[»] scaffold0361 (2 HSPs)
scaffold0361 (21-132)||(4827-4937)
scaffold0361 (21-144)||(4553-4677)
[»] scaffold0176 (1 HSPs)
scaffold0176 (24-64)||(15899-15939)


Alignment Details
Target: scaffold0185 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 21 - 534
Target Start/End: Original strand, 4133 - 4644
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    ||||||||||| ||||||||| ||||||||||   ||||||||||||| |||||| || || ||| ||||| |  ||||||||||||||||   ||| ||    
T  4133 agggaccaaaaatgaaagaatctgaaattacaacaacataatctaaatatttttttttacagggattaaaattgaaattctctaatattacatgaacgaa 4232  T
Q  121 aagaagtatttagccttgtttttacaaaataagttgtaacaaacaagttatagtacacaannnnnnnnncccaacatggtgtatgtctagtagaagaagt 220  Q
    || ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||         |||||||||||| |||| |||||       |    
T  4233 aaaaagtatttacccttgtttttacaaaataagttgtaacaaacaagttctagtacacaatttttttt-cccaacatggtgaatgtttagta-------t 4324  T
Q  221 tactaaactcgaataacataatgaataaat---gttaaattatcggttggaaaatttcatattcagtgtctatcatgtctgaaatgagattacctttagt 317  Q
    ||||||||||||||||||||||||||||||   |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4325 tactaaactcgaataacataatgaataaataatgttaaattatcgattggaaaaattcatattcagtgtctatcatgtctgaaatgagattacctttagt 4424  T
Q  318 tgaaggaatgtgtatataaaaaaagaacaacaactttttttctnnnnnnnnnnnnn---cagtcatttttaacattaaaattatggcaagttaaggtatt 414  Q
     ||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||| |||||||||||||||||||||    
T  4425 ggaaggaatgtgtatataaaaaaagaacaacaactttttttctaaaaaaaaaaaaaaaccagtcatttttaacattaatattatggcaagttaaggtatt 4524  T
Q  415 ggagcctccactagaagtaatagcttcatgaagtggttacttcaaaaagcaaagggatattccactaagcatacaagattttttgtctgtatccttttca 514  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4525 ggagcctccactagaagtagtaacttcatgaagtggttacttcaaaaagcaaagggatattccactaggcatacaagattttttgtctgtatccttttca 4624  T
Q  515 taagatacaaattaattaag 534  Q
    ||||||| ||||||||||||    
T  4625 taagataaaaattaattaag 4644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 3980 - 3893
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||| |||| |||||||||||||||||| ||||||||||||||||||||| || || ||||||||||  |||||| ||||||||||    
T  3980 gaccaacagtggaagaatttgaaattacagggacataatctaaatctttttttttacagggactaaaaccggaattcgctaatattac 3893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 390 - 534
Target Start/End: Original strand, 64519 - 64666
Alignment:
Q  390 taaaattatggcaagttaaggtat----tggagcctccactagaagtaatagcttcatgaagtggttacttcaaaaagcaaagggatattccactaagca 485  Q
    ||||||||||||||||||||||||    |||||||||||||||||||| | |||||||||||||||||  |||||||| ||||| | ||||||||| |||    
T  64519 taaaattatggcaagttaaggtatatattggagcctccactagaagtagttgcttcatgaagtggttatgtcaaaaaggaaagg-acattccactaggca 64617  T
Q  486 tacaagattttttgtctgtatccttttcataagatacaaattaattaag 534  Q
    ||||||||||| | | | |||||||||||||||||||||||||||||||    
T  64618 tacaagattttctttatatatccttttcataagatacaaattaattaag 64666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 391 - 534
Target Start/End: Original strand, 51201 - 51348
Alignment:
Q  391 aaaattatggcaagttaaggtat----tggagcctccactagaagtaa-tagcttcatgaagtggttacttcaaaaagcaaagggatattccactaagca 485  Q
    |||||||||||||||||||||||    ||||||||||||||||||| | | |||||||||||||||||   ||||||| ||||| | ||||||||| |||    
T  51201 aaaattatggcaagttaaggtatatattggagcctccactagaagttagttgcttcatgaagtggttatgccaaaaaggaaagg-acattccactaggca 51299  T
Q  486 tacaagattttttgtctgtatccttttcataagatacaaattaattaag 534  Q
    ||||||||||| | | | |||||||||||||||||||||||||||||||    
T  51300 tacaagattttctttatatatccttttcataagatacaaattaattaag 51348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 62432 - 62470
Alignment:
Q  136 ttgtttttacaaaataagttgtaacaaacaagttatagt 174  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  62432 ttgtttttacaaaataagttgtaactaacaagttctagt 62470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 52552952 - 52553042
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| |||||||||||||||| |||||||||||||||| || || ||||||||||| |||||| ||||||||||    
T  52552952 agggaccaaaagtggaagaatatgaaattacagagacaaaatctaaatctttttttttacagggactaaaactagaattcgctaatattac 52553042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 9267089 - 9266968
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||  |||||| |||||||||| |  || ||    
T  9267089 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttttttacagggactaaaaccggaattcgctaatattacagggacgaa 9266990  T
Q  121 aagaagtatttagccttgtttt 142  Q
    |||| ||||||| |||| ||||    
T  9266989 aagaggtatttacccttttttt 9266968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 45970026 - 45969913
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaag 123  Q
    |||||||||||||||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||  |||||| |||||||||| |  || |||||    
T  45970026 gaccaaaagtgaaagaatctgaaattacagggacaaaatctaaatctttttttttacagggactaaaaccggaattcactaatattacagggacgaaaag 45969927  T
Q  124 aagtatttagcctt 137  Q
    | ||||||| ||||    
T  45969926 aggtatttaccctt 45969913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 14161985 - 14161895
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||||||||||||| ||  | | ||||||||| |||||| ||||||||||    
T  14161985 agggaccaaaagtggaagaatatgaaattacagggacataatctaaatctttttttttataggaactaaaactggaattcgctaatattac 14161895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 16722254 - 16722366
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaa 119  Q
    ||||||||||||||| |||||| ||||||||||| |||| ||||||||||||||||  | || |||||||||||  ||||| |||||||||| |  || |    
T  16722254 aagggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttttgtacagggactaaaactgaaattcgctaatattacagggacga 16722353  T
Q  120 aaagaagtattta 132  Q
    ||||| |||||||    
T  16722354 aaagaggtattta 16722366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 14262151 - 14262060
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||||||| |||||| ||||||||||| |||| ||||||||| |||||| || || ||||||||||  |||||| ||||||||||    
T  14262151 aagggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatatttttttttacaaggactaaaaccggaattcgctaatattac 14262060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 16722109 - 16721982
Alignment:
Q  17 aagaagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaa 116  Q
    |||||||||||||||||| |||||| ||||||||||  |||| ||||||||| |||||| || ||  |||||||||  |||||| |||||||||| |  |    
T  16722109 aagaagggaccaaaagtggaagaatctgaaattacatggacaaaatctaaatttttttttttacagtgactaaaaccggaattcgctaatattacaggga 16722010  T
Q  117 caaaaagaagtatttagccttgttttta 144  Q
    | |||||| ||||||| |||| ||||||    
T  16722009 cgaaaagaggtatttaccctttttttta 16721982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 21633160 - 21633250
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| ||  | |||||||||||  ||||| ||||||||||    
T  21633160 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttttttatagggactaaaactgaaattcgctaatattac 21633250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 14262300 - 14262416
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||| ||||||| || ||| ||||||||||| |||| |||||||||||||||| || || ||||||||||  |||||| |||||||||| |  || ||    
T  14262300 agggactaaaagtggaacaatatgaaattacagggacaaaatctaaatctttttttttacagggactaaaaccggaattcgctaatattacagggacgaa 14262399  T
Q  121 aagaagtatttagcctt 137  Q
    |||| ||||||| ||||    
T  14262400 aagaggtatttaccctt 14262416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 30500305 - 30500420
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| || ||| ||||||||||| |||| ||||||||| |||||| || || ||||||||||| |||||| |||||||||| |  || ||    
T  30500305 agggaccaaaagtggaacaatatgaaattacagggacaaaatctaaat-tttttttttacagggactaaaactggaattcgctaatattacagggacgaa 30500403  T
Q  121 aagaagtatttagcctt 137  Q
    |||| ||||||| ||||    
T  30500404 aagaggtatttaccctt 30500420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 43572503 - 43572392
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| ||||||||| ||| || || || ||||||||||   ||||| |||||||||| | ||| ||    
T  43572503 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatttttctttttacagggactaaaaccgaaattcgctaatattacaggaacgaa 43572404  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  43572403 aagatgtattta 43572392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 4204822 - 4204768
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||| ||||||||||| |||||||||||||||||||||    
T  4204822 agggaccaaaagtggaagaatctgaaattacagggacataatctaaatctttttt 4204768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 14162134 - 14162243
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaa 119  Q
    ||||||||||||||| |||||| ||||||||||  |||| ||||||||||| |||| || || ||||||||||  |||||| |||||||||| |  ||||    
T  14162134 aagggaccaaaagtggaagaatctgaaattacaaggacaaaatctaaatctctttt-ttacagggactaaaaccggaattcgctaatattacagggacaa 14162232  T
Q  120 aaagaagtatt 130  Q
    ||||| |||||    
T  14162233 aaagaggtatt 14162243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 20853960 - 20854049
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||   ||||| ||||||||||    
T  20853960 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttttttaca-ggactaaaaccgaaattcgctaatattac 20854049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 14171852 - 14171961
Alignment:
Q  23 ggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaa 122  Q
    |||||||||||| ||||||  |||||||||| |||| |||||||||||||||  || || ||||||||||  |||||| |||||||||| |  || ||||    
T  14171852 ggaccaaaagtggaagaatcagaaattacagggacaaaatctaaatctttttatttacagggactaaaaccggaattcgctaatattacagggacgaaaa 14171951  T
Q  123 gaagtattta 132  Q
    || |||||||    
T  14171952 gaggtattta 14171961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 19112880 - 19112788
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctt-ttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||||||| |||||| ||||||| ||| |||| |||||||||||| |||| || || ||||||||||  |||||| ||||||||||    
T  19112880 aagggaccaaaagtggaagaatatgaaattccagggacaaaatctaaatcttttttttttacagggactaaaaccggaattcgctaatattac 19112788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 5800719 - 5800648
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaac 92  Q
    ||||||||||| || |||||| ||||||||||| ||||||||||||||| ||||| || || ||||||||||    
T  5800719 agggaccaaaaatggaagaatatgaaattacagggacataatctaaatccttttttttacagggactaaaac 5800648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 5800868 - 5800958
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||||||| |||||| ||||||||||  |||| |||||||||||||||| || || ||||| ||||  |||||| ||||||||||    
T  5800868 aagggaccaaaagtggaagaatatgaaattacaaggacaaaatctaaatctttttttttacagggact-aaaccggaattcgctaatattac 5800958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 19720432 - 19720357
Alignment:
Q  36 aagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||  |||||| ||||||||||    
T  19720432 aagaatatgaaattacagggacaaaatctaaatctttttttttacagggactaaaaccggaattcgctaatattac 19720357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 45058754 - 45058876
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaa 119  Q
    |||||| ||||| || |||||| |||||||||||||||| ||||||||||| |||| || |  ||||||||||| |||||| |||||||||  || ||||    
T  45058754 aagggatcaaaaatggaagaatctgaaattacagagacaaaatctaaatctctttt-ttacggggactaaaactagaattcgctaatattaaagagacaa 45058852  T
Q  120 aaagaagtatttagccttgttttt 143  Q
    || || | ||||| |||| |||||    
T  45058853 aaggaggcatttaccctttttttt 45058876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 14171700 - 14171646
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||| |||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  14171700 agggatcaaaagtggaagaatttgaaattacagggacaaaatctaaatctttttt 14171646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 21633010 - 21632940
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaa 91  Q
    ||||||||||||||||||||| ||||||||||| ||||  ||||| ||||||||| || || |||||||||    
T  21633010 agggaccaaaagtgaaagaatctgaaattacagggacaacatctagatctttttttttacagggactaaaa 21632940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 33372520 - 33372430
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| || ||| ||||||||||| |||| |||||||||||||||  || || | ||||||||  |||||| ||||||||||    
T  33372520 agggaccaaaagtggaataatctgaaattacagggacaaaatctaaatctttttatttacaggaactaaaaccagaattcgctaatattac 33372430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 19113029 - 19113118
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatatta 110  Q
    |||||||||||||  |||||| ||||||||||| || | |||||||||||||||| || || ||||||||||  ||||||  ||||||||    
T  19113029 agggaccaaaagtagaagaatctgaaattacagggataaaatctaaatctttttttttacagggactaaaaccggaattcgttaatatta 19113118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 35995938 - 35996062
Alignment:
Q  17 aagaagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaa 116  Q
    |||||||||||||||||| |||||| ||||||||| |||||| | |||||   |||||| || || |||||||||   |||||| |||||||||| |  |    
T  35995938 aagaagggaccaaaagtggaagaatctgaaattactgagacaaattctaa---tttttttttacagggactaaaatcggaattcgctaatattacaggga 35996034  T
Q  117 caaaaagaagtatttagccttgttttta 144  Q
    | |||||| ||||||| |||| ||||||    
T  35996035 cgaaaagatgtatttaccctttttttta 35996062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 49986639 - 49986530
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatctt-ttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaa 122  Q
    ||||||||||  |||||| ||||||||||| |||| |||||||||||| |||| || ||  |||||||||  ||||||||||||||||| |  || ||||    
T  49986639 gaccaaaagtagaagaatctgaaattacagggacaaaatctaaatcttttttttttacagtgactaaaaccggaattctctaatattacagggacgaaaa 49986540  T
Q  123 gaagtattta 132  Q
    || |||||||    
T  49986539 gaggtattta 49986530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 30500156 - 30500067
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||||||| |||||| ||||||||||| |||| ||||||||  |||||| || || ||||||||||   ||||| ||||||||||    
T  30500156 aagggaccaaaagtggaagaatatgaaattacagggacaaaatctaaa--tttttttttacagggactaaaaccgaaattcgctaatattac 30500067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 15328723 - 15328778
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||||||||||||| || ||| ||||||||||| |||| ||||||||||||||||    
T  15328723 aagggaccaaaagtggaaaaatctgaaattacagggacaaaatctaaatctttttt 15328778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 11003844 - 11003730
Alignment:
Q  23 ggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaa 122  Q
    |||||||||||| |||||| ||||||||||  |||| ||||||| |||||||  || || ||||||||||  ||||||  |||||||||    |||||||    
T  11003844 ggaccaaaagtggaagaatctgaaattacaaggacaaaatctaagtctttttatttacagggactaaaaccggaattcggtaatattacaaggacaaaaa 11003745  T
Q  123 gaagtatttagcctt 137  Q
    || ||||||| ||||    
T  11003744 gaggtatttaccctt 11003730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 20853810 - 20853756
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||| |||||||| || |||| ||||||||||||||||    
T  20853810 agggaccaaaagtggaagaatatgaaattatagggacaaaatctaaatctttttt 20853756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 35741849 - 35741938
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||| ||||| | |||||| | |||| |||| ||||||||||||| ||||||| || || ||||||||||| |||||| ||||||||||    
T  35741849 agggactaaaagcggaagaatctaaaatgacagggacataatctaaa-ctttttttttacagggactaaaactggaattcgctaatattac 35741938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 43572655 - 43572709
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||| ||||||||||| |||| ||||||||| ||||||    
T  43572655 agggaccaaaagtggaagaatctgaaattacagggacagaatctaaatttttttt 43572709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 47575387 - 47575333
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||||||||||||||||||| | |||||||| | ||| ||||||||||||||||    
T  47575387 agggaccaaaagtgaaagaatataaaattacataaacaaaatctaaatctttttt 47575333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 33372669 - 33372722
Alignment:
Q  22 gggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||| |||||||| |||||| ||||||||||| |||| ||||||||||||||||    
T  33372669 gggatcaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttt 33372722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 45970183 - 45970296
Alignment:
Q  25 accaaaagtgaaagaatttgaaattacagagacataatctaaatc-ttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaag 123  Q
    |||||||||| |||||| ||||||||||| |||| ||| |||||| |||||| || || ||||||||||   ||||| |||||||||| |  || |||||    
T  45970183 accaaaagtggaagaatctgaaattacagggacaaaatttaaatcttttttttttacagggactaaaaccgaaattcactaatattacagggacgaaaag 45970282  T
Q  124 aagtatttagcctt 137  Q
    | ||||||| ||||    
T  45970283 aggtatttaccctt 45970296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 45003610 - 45003558
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttt 73  Q
    |||||| ||||||| |||||| ||||||||||| |||| ||||||||||||||    
T  45003610 agggacaaaaagtggaagaatctgaaattacagggacaaaatctaaatctttt 45003558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 47575539 - 47575654
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaag 123  Q
    ||||||||||  || ||| |||||||||||||||| ||||| ||| |||||| || || ||||||||||  |||||| || ||||||| || || || ||    
T  47575539 gaccaaaagttgaaaaatctgaaattacagagacaaaatct-aatttttttttttacagggactaaaaccagaattcactcatattacggagacgaatag 47575637  T
Q  124 aagtatttagccttgtt 140  Q
    | ||||||| |||||||    
T  47575638 aggtatttacccttgtt 47575654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 49986792 - 49986903
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatct-tttttcttgcacggactaaaacttgaattctctaatattactgaaacaa 119  Q
    |||||||||||||| |||||| |||||||||| ||||| ||||||||| | ||||| || || | ||||||||   ||||| ||||||||||||  || |    
T  49986792 agggaccaaaagtggaagaatatgaaattaca-agacaaaatctaaatttcttttttttacaggaactaaaaccgaaattcgctaatattactgggacga 49986890  T
Q  120 aaagaagtattta 132  Q
    ||||| |||||||    
T  49986891 aaagaggtattta 49986903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 52552807 - 52552752
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||| |||||||| |||||| ||||||||||| |||| ||||||||||| ||||    
T  52552807 aagggatcaaaagtggaagaatctgaaattacagggacaaaatctaaatctatttt 52552752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 35995792 - 35995746
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaa 67  Q
    |||||||||||||| |||||| ||||||||||| |||| ||||||||    
T  35995792 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaaa 35995746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 45003760 - 45003814
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||| |||||||| || |||  ||||||||||||||||    
T  45003760 agggaccaaaagtggaagaatatgaaattatagggactaaatctaaatctttttt 45003814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 24490209 - 24490273
Alignment:
Q  47 attacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||| || | ||| |||||||||||| ||||| ||||||||||  |||||| ||||||||||    
T  24490209 attacagggataaaatttaaatctttttttttgcagggactaaaaccggaattcactaatattac 24490273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 52552852 - 52552884
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacag 53  Q
    |||||||||||||||| ||||||||||||||||    
T  52552852 agggaccaaaagtgaaggaatttgaaattacag 52552884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 23979165 - 23979276
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||||||||||||||| |||| |||||||||||||||| || || ||||||||||  |||||| |||||||||| |  || ||    
T  23979165 agggaccaaaagtggaagaatttgaaattacagggacaaaatctaaatctttttttttacagggactaaaaccggaattcgctaatattacagggacgaa 23979264  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  23979265 aagaggtattta 23979276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 24837433 - 24837544
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    ||||| |||||||  |||||||||||||||||| |||| |||||||||||||||| || || ||||||||||| |||||| |||||||||| |  || ||    
T  24837433 agggagcaaaagtagaagaatttgaaattacagggacaaaatctaaatctttttttttacagggactaaaactggaattcgctaatattacagggacgaa 24837532  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  24837533 aagaggtattta 24837544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 20709326 - 20709235
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcac--ggactaaaacttgaattctctaatatta 110  Q
    |||||||||||||| |||||||||||||||||| |||| |||||||||||||||| || |||  ||||||||||  |||||| |||||||||    
T  20709326 agggaccaaaagtggaagaatttgaaattacagggacagaatctaaatcttttttttttcacatggactaaaaccggaattcactaatatta 20709235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 14144164 - 14144235
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaa 91  Q
    ||||||||||||||| |||||||||||||||||| |||| |||||||||||||||| || || |||||||||    
T  14144164 aagggaccaaaagtggaagaatttgaaattacagggacaaaatctaaatctttttttttacagggactaaaa 14144235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 29445069 - 29445159
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||||||| |||||| ||||||||||  |||| |||||||||||||||| || || ||||||||||| |||||| ||||||||||    
T  29445069 aagggaccaaaagtggaagaatctgaaattacaaggacaaaatctaaatctttttttttaca-ggactaaaactggaattcgctaatattac 29445159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 6817236 - 6817147
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| ||||||||||  ||||||||||||||||||||| || || ||||||||||  |||||| ||||||||||    
T  6817236 agggaccaaaagtggaagaatctgaaattacatggacataatctaaatctttttt-ttacagggactaaaaccggaattcactaatattac 6817147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 7126181 - 7126271
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || ||  |||||||||  |||||| ||||||||||    
T  7126181 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttttttacaaagactaaaaccggaattcgctaatattac 7126271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 22571191 - 22571101
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| |||||||||||||| ||||||||||| |||||| || || |||||||||   |||||| ||||||||||    
T  22571191 agggaccaaaagtggaagaatatgaaattacagagatataatctaaatttttttttttacagggactaaaatcggaattcgctaatattac 22571101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 24074417 - 24074327
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| |||||||||||||||| ||||||||| |||||| || || ||||||||||   ||||| ||||||||||    
T  24074417 agggaccaaaagtggaagaatatgaaattacagagacaaaatctaaatatttttttttacagggactaaaaccgaaattcgctaatattac 24074327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 31799755 - 31799665
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatatta 110  Q
    ||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||| ||||  |||||| |||||||||    
T  31799755 aagggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttttttacagggactgaaaccggaattcgctaatatta 31799665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 14144011 - 14143900
Alignment:
Q  25 accaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaaga 124  Q
    |||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||  |||||| |||||||||| |  || ||||||    
T  14144011 accaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttt-ttacagggactaaaaccggaattcgctaatattacagggacgaaaaga 14143913  T
Q  125 agtatttagcctt 137  Q
     ||||||| ||||    
T  14143912 ggtatttaccctt 14143900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 17762396 - 17762281
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| |||||||||||  ||| ||| |||||||||||| || || ||||||||||  |||||| |||||||||| |  |||||    
T  17762396 agggaccaaaagtggaagaatctgaaattacaggaacaaaatataaatctttttt-ttacagggactaaaaccggaattcgctaatattacagggacaaa 17762298  T
Q  121 aagaagtatttagcctt 137  Q
    |||| ||||||| ||||    
T  17762297 aagaggtatttaccctt 17762281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 14411811 - 14411700
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| |||||||||| ||||| ||| ||||||||||||  | || ||||||||||  |||||| |||||||||| |  || ||    
T  14411811 agggaccaaaagtggaagaatctgaaattacatagacaaaatataaatctttttttatacagggactaaaaccggaattcgctaatattacagggacgaa 14411712  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  14411711 aagaggtattta 14411700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 24837283 - 24837172
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||  |||| |||||||||||||||| || || ||||||||||  |||||| ||| |||||| |  || ||    
T  24837283 agggaccaaaagtggaagaatatgaaattacaaggacaaaatctaaatctttttttttacagggactaaaaccggaattcgctattattacagggacgaa 24837184  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  24837183 aagaggtattta 24837172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 7126032 - 7125923
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaa 119  Q
    ||||||||||||||| |||||| |||||||| || |||| |||||||||||||||| || || |||||||||   |||||| |||||||||| | ||| |    
T  7126032 aagggaccaaaagtggaagaatctgaaattatagggacaaaatctaaatctttttt-ttacagggactaaaatcggaattcgctaatattacaggaacga 7125934  T
Q  120 aaagaagtatt 130  Q
    ||||| |||||    
T  7125933 aaagaggtatt 7125923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 18336719 - 18336805
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaat 106  Q
    |||||| |||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||  |||||| |||||    
T  18336719 aagggatcaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttttttacagggactaaaaccggaattcgctaat 18336805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 41001617 - 41001706
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| |||||||| || |||| |||||||||||||||| || || ||||||||||  |||||| ||||||||||    
T  41001617 agggaccaaaagtggaagaatctgaaattatagggacaaaatctaaatctttttt-ttacaaggactaaaaccggaattcgctaatattac 41001706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 17762546 - 17762657
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||  | |||| |||||||||||||||| || || ||||||||||  |||||| |||||| ||| |  || ||    
T  17762546 agggaccaaaagtggaagaatctgaaattatggggacaaaatctaaatctttttttttacagggactaaaaccagaattcgctaatactacagggacgaa 17762645  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  17762646 aagaggtattta 17762657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 4919104 - 4919050
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||| ||||||||||| |||| ||||||||||||||||    
T  4919104 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttt 4919050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 993861 - 993753
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||  |||  |||||||   |||||| || || ||||||||||  |||||| |||||||||| || || ||    
T  993861 agggaccaaaagtggaagaatatgaaattacaaggactaaatctaa---tttttttttacagggactaaaaccggaattcgctaatattacagagacgaa 993765  T
Q  121 aagaagtattta 132  Q
    ||||||||||||    
T  993764 aagaagtattta 993753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 24074565 - 24074637
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaac 92  Q
    ||||||||||||||| |||||| ||||||||||  |||| |||||||||||||||| || || ||| ||||||    
T  24074565 aagggaccaaaagtggaagaatatgaaattacaaggacaaaatctaaatctttttttttacagggattaaaac 24074637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 6817388 - 6817475
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||| |||||| ||||||||||| |||| ||||||||| |||||| || ||  |||||||| |  ||||| ||||||||||    
T  6817388 gaccaaaagtggaagaatatgaaattacagggacaaaatctaaatttttttttttacagagactaaaattaaaattcgctaatattac 6817475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 27159105 - 27159050
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||||||||||||| |||||| ||||||||||| |||| ||| ||||||||||||    
T  27159105 aagggaccaaaagtggaagaatctgaaattacagggacaaaatttaaatctttttt 27159050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 29444920 - 29444850
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaa 91  Q
    |||||||||||||  |||||| ||||||||||  ||||||||||||||| ||||| || || |||||||||    
T  29444920 agggaccaaaagtagaagaatatgaaattacaaggacataatctaaatccttttttttacagggactaaaa 29444850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 31799904 - 31799992
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatatta 110  Q
    ||||| |||||| | |||||| ||||||||||  |||| |||||||||||||||| || || ||||||||||  |||||| |||||||||    
T  31799904 agggatcaaaagaggaagaatctgaaattacatggacaaaatctaaatctttttttttaca-ggactaaaaccggaattcgctaatatta 31799992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 994010 - 994062
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttt 73  Q
    |||||||||||||| |||||| || |||||||| |||| ||||||||||||||    
T  994010 agggaccaaaagtggaagaatctgcaattacagggacaaaatctaaatctttt 994062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 18336582 - 18336528
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||| |||||| | |||||| ||||||||||| |||| ||||||||||||||||    
T  18336582 agggatcaaaagcggaagaatctgaaattacagggacaaaatctaaatctttttt 18336528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 24650810 - 24650760
Alignment:
Q  25 accaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||| |||||| |||||||||||  ||| ||||||||||||||||    
T  24650810 accaaaagtggaagaatatgaaattacaggaacaaaatctaaatctttttt 24650760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 27159217 - 27159275
Alignment:
Q  17 aagaagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||||||||||||| || |||||| | ||||||||| |||| ||||||||| ||||||    
T  27159217 aagaagggaccaaaaatggaagaatataaaattacagggacaaaatctaaatttttttt 27159275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 30512401 - 30512312
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| || ||| ||||||||||| |||  |||||||||| ||||| || || ||||||||||   ||||| ||||||||||    
T  30512401 agggaccaaaagtggaaaaatctgaaattacagggaccaaatctaaatccttttt-ttacagggactaaaaccaaaattcactaatattac 30512312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 30552741 - 30552652
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| || ||| ||||||||||| |||  |||||||||| ||||| || || ||||||||||   ||||| ||||||||||    
T  30552741 agggaccaaaagtggaaaaatctgaaattacagggaccaaatctaaatccttttt-ttacagggactaaaaccaaaattcactaatattac 30552652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 41001465 - 41001380
Alignment:
Q  23 ggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||| |||||| ||||||||||| |||| |||||||   |||||| || || ||||||||||   ||||| ||||||||||    
T  41001465 ggaccaaaagtggaagaatatgaaattacagggacaaaatctaa---tttttttttacagggactaaaaccgaaattcgctaatattac 41001380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 20709478 - 20709546
Alignment:
Q  23 ggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaac 92  Q
    |||| ||||||| |||||| ||||||||||  |||| |||||||||||||||| || || ||||||||||    
T  20709478 ggacaaaaagtggaagaatatgaaattacatggacaaaatctaaatctttttt-ttacagggactaaaac 20709546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 34064096 - 34063985
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| |||||||||||||||| |||||||||||||||| || || ||||||||||| ||||||  ||||||||| |  || ||    
T  34064096 agggaccaaaagtggaagaatctgaaattacagagacaaaatctaaatctttttttttacagggactaaaactagaattcgttaatattacagggacgaa 34063997  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  34063996 aagaggtattta 34063985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 26252502 - 26252591
Alignment:
Q  22 gggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || | ||||||||| |||||| ||||||||||    
T  26252502 gggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttttttacaggaactaaaactggaattcgctaatattac 26252591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 37012822 - 37012731
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||| ||| | |||||| ||||||||||    
T  37012822 aagggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttttttacaaggactgaaattagaattcgctaatattac 37012731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 9516724 - 9516634
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| ||||||||||  |||| |||||||||||||||| || || ||||||||||  |||||| ||||||||||    
T  9516724 agggaccaaaagtggaagaatatgaaattacaaggacaaaatctaaatctttttttttacaaggactaaaaccggaattcgctaatattac 9516634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 9619094 - 9619004
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| ||||||||||| |||| ||||||||||||| || || || ||||||||||  |||||| ||||||||||    
T  9619094 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatctttgtttttacagggactaaaaccggaattcgctaatattac 9619004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 9619245 - 9619359
Alignment:
Q  23 ggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaa 122  Q
    |||||||||||| |||||| ||||||||||  |||| ||||||||||||||||  | || ||||||||||  |||||| |||||||||| |  |||||||    
T  9619245 ggaccaaaagtggaagaatatgaaattacaaggacaaaatctaaatctttttttctacagggactaaaaccagaattcgctaatattacagggacaaaaa 9619344  T
Q  123 gaagtatttagcctt 137  Q
    || ||||||| ||||    
T  9619345 gaggtatttaccctt 9619359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 15640829 - 15640740
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||||||||||||| ||||||||||| |||| |||||||||||||||| || || | ||||||||  |||||| ||||||||||    
T  15640829 agggaccaaaagtgaaagaatatgaaattacagggacaaaatctaaatctttttt-ttacaggaactaaaaccggaattcgctaatattac 15640740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 38574232 - 38574322
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||  || || ||||||||||  |||||| ||||||||||    
T  38574232 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttatttacagggactaaaaccagaattcgctaatattac 38574322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 31090175 - 31090063
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctt-ttttcttgcacggactaaaacttgaattctctaatattactgaaacaa 119  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||| |||| || || |||||||||    ||||| |||||||||| |  ||||    
T  31090175 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatcttttttttttacagggactaaaatcgaaattcactaatattacagggacaa 31090076  T
Q  120 aaagaagtattta 132  Q
    |||||||||||||    
T  31090075 aaagaagtattta 31090063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 34064242 - 34064298
Alignment:
Q  17 aagaagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttt 73  Q
    |||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||    
T  34064242 aagaagggaccaaaagtggaagaatctgaaattacagagacaaaatctaaatctttt 34064298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 48579981 - 48579909
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaac 92  Q
    |||||||||||| ||||||||| |||||||||||||||| |||||||||||||||| || ||  |||||||||    
T  48579981 aagggaccaaaattgaaagaatctgaaattacagagacaaaatctaaatctttttttttacatagactaaaac 48579909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 35376273 - 35376187
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||| |||||| | |||||||||||||| |||||||||||||||| || || ||||||||||  |||||| ||||||||||    
T  35376273 gaccaaaagtggaagaatctaaaattacagagacaaaatctaaatctttttt-ttacagggactaaaaccagaattcgctaatattac 35376187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 9396968 - 9397073
Alignment:
Q  26 ccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaagaa 125  Q
    ||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||  |||||  |||||||||| |  || |||||||    
T  9396968 ccaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttt-ttacagggactaaaaccggaatttgctaatattacagggacgaaaagaa 9397066  T
Q  126 gtattta 132  Q
    |||||||    
T  9397067 gtattta 9397073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 13132201 - 13132259
Alignment:
Q  17 aagaagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||||||| |||||| ||||||||||| |||| ||||||||||||||||    
T  13132201 aagaagggaccaaaagtggaagaatatgaaattacagggacagaatctaaatctttttt 13132259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 46046688 - 46046778
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||| |||||||| |||||| ||||||||||| |||| |||||||||||||||  || || ||||||||||  |||||| ||||||||||    
T  46046688 agggatcaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttatttacagggactaaaaccggaattcgctaatattac 46046778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 3018126 - 3018014
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctt-ttttcttgcacggactaaaacttgaattctctaatattactgaaacaa 119  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||| |||| || |  ||||||||||  |||||| |||||||||| |  || |    
T  3018126 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatcttttttttttaccgggactaaaaccggaattcgctaatattacagggacga 3018027  T
Q  120 aaagaagtattta 132  Q
    ||||| |||||||    
T  3018026 aaagaggtattta 3018014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 18713223 - 18713278
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||| || |||||| |||||||||||||||| ||||||||||||||||    
T  18713223 aagggaccaaaactggaagaatctgaaattacagagacaaaatctaaatctttttt 18713278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 9516874 - 9516964
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||  |||||| ||||||||||| |||| |||||||||||||||| || ||  |||||||||   ||||| ||||||||||    
T  9516874 agggaccaaaagtagaagaatctgaaattacagggacaaaatctaaatctttttttttacagagactaaaaccgaaattcgctaatattac 9516964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 15640983 - 15641033
Alignment:
Q  25 accaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||| |||||| ||||||||||| |||||||||||||||||||||    
T  15640983 accaaaagtggaagaatctgaaattacagggacataatctaaatctttttt 15641033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 35376392 - 35376481
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||| | ||||||||||| |||| ||| |||||||||||| || || ||||||||||| |||||  ||||||||||    
T  35376392 agggaccaaaagtggaagattctgaaattacagggacaaaatttaaatctttttt-ttacagggactaaaactggaatttgctaatattac 35376481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 38574082 - 38574028
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||| ||||||||||| |||| ||||||||||||||||    
T  38574082 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttt 38574028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 4355995 - 4355907
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatatta 110  Q
    ||||||||||||||||||||| |||||||||| ||||| |||||||| ||| ||| || || | ||||||||  |||||| |||||||||    
T  4355995 agggaccaaaagtgaaagaatatgaaattacatagacaaaatctaaagcttgttt-ttacaggaactaaaaccggaattcgctaatatta 4355907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 31944061 - 31943973
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt-cttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||| |||||| ||||||||||| |||| ||||||||||||||||  || || | ||||||||  |||||| ||||||||||    
T  31944061 gaccaaaagtggaagaatatgaaattacagggacaaaatctaaatcttttttatttacaggaactaaaaccggaattcgctaatattac 31943973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 48260021 - 48260069
Alignment:
Q  27 caaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  48260021 caaaagtggaagaatttgaaattacagggacaaaatctaaatctttttt 48260069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 4356144 - 4356187
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatc 63  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||    
T  4356144 aagggaccaaaagtggaagaatttgaaattacagagacaaaatc 4356187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 9396813 - 9396759
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| || |||||||||||| || |||| ||||||||||||||||    
T  9396813 agggaccaaaagtggaaaaatttgaaattatagggacaaaatctaaatctttttt 9396759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 7819124 - 7819075
Alignment:
Q  25 accaaaagtgaaagaatttgaaattacagagacataatctaaatcttttt 74  Q
    |||||||||| |||||| ||||||||||| |||| |||||||||||||||    
T  7819124 accaaaagtggaagaatctgaaattacagggacaaaatctaaatcttttt 7819075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 37012974 - 37013060
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||| |||||| ||||||||||| |||| ||||| ||| ||||||  | || ||||||||||  |||||| ||||||||||    
T  37012974 gaccaaaagtggaagaatatgaaattacagggacaaaatct-aatttttttttatacagggactaaaaccagaattcgctaatattac 37013060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 3273884 - 3273938
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||| |||||||| |||||| ||||||||||| || | ||||||||||||||||    
T  3273884 agggatcaaaagtggaagaatctgaaattacagggataaaatctaaatctttttt 3273938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 13132055 - 13132001
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||| |||||||| |||||| ||||||||||   ||||||||||||||||||||    
T  13132055 agggatcaaaagtggaagaatctgaaattacatgaacataatctaaatctttttt 13132001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 26252382 - 26252328
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||| ||||||||||| |||| ||||||| | ||||||    
T  26252382 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaattttttttt 26252328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 31090325 - 31090395
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaa 91  Q
    |||||||||||||  |||||| ||||||||||| |||| ||||||| | |||||| || || |||||||||    
T  31090325 agggaccaaaagtagaagaatctgaaattacagggacaaaatctaattttttttttttacagggactaaaa 31090395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 36888944 - 36888998
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||| ||||||| | |||| ||||||||||| |||||||||||||| ||||||    
T  36888944 agggactaaaagtggaggaatctgaaattacagggacataatctaaatttttttt 36888998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 48580130 - 48580184
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| || ||| ||||||||||| |||| |||||||||| |||||    
T  48580130 agggaccaaaagtggaacaatatgaaattacagggacaaaatctaaatcgttttt 48580184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 3018275 - 3018345
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaac 92  Q
    |||||||||||||||  ||||| ||||||||||  |||| |||||||||||||||| || || ||||||||||    
T  3018275 aagggaccaaaagtggtagaatctgaaattacacggaca-aatctaaatctttttt-ttacagggactaaaac 3018345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 3273736 - 3273692
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatcta 65  Q
    |||||||||||||| |||||| ||||||||||| |||| ||||||    
T  3273736 agggaccaaaagtggaagaatatgaaattacagggacaaaatcta 3273692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 137
Target Start/End: Complemental strand, 41947054 - 41946963
Alignment:
Q  43 tgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaagaagtatttagcctt 137  Q
    ||||||||||| |||| |||||||   |||||| ||||| ||||||||||  |||||| |||||||||| |  || |||||| ||||||| ||||    
T  41947054 tgaaattacagggacaaaatctaa---tttttttttgcagggactaaaaccggaattcactaatattacagggacgaaaagaggtatttaccctt 41946963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 20995931 - 20996040
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaa 119  Q
    ||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| || || |||||||||||  ||||| |||||||||| |  ||||    
T  20995931 aagggaccaaaagtggaagaatatgaaattacagagacaaaatctaaatctttttt-ttacatggactaaaactaaaattcgctaatattacagggacaa 20996029  T
Q  120 aaagaagtatt 130  Q
    ||||| |||||    
T  20996030 aaagaggtatt 20996040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 4907076 - 4906960
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||| ||||| || || ||||||||||| |||||| |||||||||| |  || ||    
T  4907076 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatcattttttttacagggactaaaactagaattcactaatattacagggacgaa 4906977  T
Q  121 aagaagtatttagcctt 137  Q
    |||| ||||||| ||||    
T  4906976 aagaggtatttaccctt 4906960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 4907226 - 4907316
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||| | || || ||||||||||| |||||| ||||||||||    
T  4907226 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatcttttattttacagggactaaaactggaattcgctaatattac 4907316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 24467742 - 24467621
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||| | |||||| |||||||||| |  || ||    
T  24467742 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttt-ttacagggactaaaattggaattcgctaatattacagggacgaa 24467644  T
Q  121 aagaagtatttagccttgttttt 143  Q
    |||| ||||||| |||| |||||    
T  24467643 aagatgtatttaccctttttttt 24467621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 24467891 - 24467981
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||  |||||| ||||||||||    
T  24467891 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttttttacagggactaaaaccggaattcactaatattac 24467981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 39711336 - 39711453
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||| | |||| |||||||||||||||| || || ||||||||||  |||||| |||||||||| |  || ||    
T  39711336 agggaccaaaagtggaagaatatgaaattacggggacaaaatctaaatctttttttttacagggactaaaaccagaattcgctaatattacagggacgaa 39711435  T
Q  121 aagaagtatttagccttg 138  Q
    |||| ||||||| |||||    
T  39711436 aagaggtatttacccttg 39711453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 33628804 - 33628693
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    ||||||||||||||||||||| ||||||||| | |||| |||||||||||||||| || |  ||||||||||  |||||| |||||||||| |  || ||    
T  33628804 agggaccaaaagtgaaagaatctgaaattacggggacaaaatctaaatctttttttttacggggactaaaaccagaattcgctaatattacagggacgaa 33628705  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  33628704 aagaggtattta 33628693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 48072230 - 48072315
Alignment:
Q  26 ccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||| |||||| ||||||||||| |||||||||||||| |||||| || || ||||||||||  |||||| ||||||||||    
T  48072230 ccaaaagtggaagaatatgaaattacagggacataatctaaatatttttttttacaaggactaaaaccggaattcactaatattac 48072315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 18462399 - 18462284
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    ||||||||||| || |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||  |||||| |||||||||| |  || ||    
T  18462399 agggaccaaaaatggaagaatctgaaattacagggacaaaatctaaatctttttt-ttacagggactaaaaccggaattcgctaatattacagggacgaa 18462301  T
Q  121 aagaagtatttagcctt 137  Q
    |||| ||||||| ||||    
T  18462300 aagaggtatttaccctt 18462284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 52058272 - 52058388
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||||||||||||||||||||  | || | ||||||||   ||||| |||||||||| |  || ||    
T  52058272 agggaccaaaagtggaagaatctgaaattacagggacataatctaaatctttttttctacaggaactaaaaccaaaattcgctaatattacagggacgaa 52058371  T
Q  121 aagaagtatttagcctt 137  Q
    |||| ||||||| ||||    
T  52058372 aagaggtatttaccctt 52058388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 34749373 - 34749480
Alignment:
Q  25 accaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaaga 124  Q
    |||||||||| |||||| ||||||||||| || | |||||||||||||||| || || |||||||||   ||||||  ||||||||| || |||||||||    
T  34749373 accaaaagtggaagaatctgaaattacagggataaaatctaaatctttttttttacaaggactaaaatcggaattcgataatattacagagacaaaaaga 34749472  T
Q  125 agtattta 132  Q
     |||||||    
T  34749473 ggtattta 34749480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 8293071 - 8293161
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatc-ttttttcttgcacggactaaaacttgaattctctaatatta 110  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||| |||||| || || ||||||||||| ||||||  ||||||||    
T  8293071 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatcttttttttttacagggactaaaactagaattcgttaatatta 8293161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 39711186 - 39711097
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| ||||||||||  |||| |||||||||||||||| || || ||||||||||  |||||| ||||||||||    
T  39711186 agggaccaaaagtggaagaatatgaaattacaaggacaaaatctaaatctttttt-ttacagggactaaaaccggaattcgctaatattac 39711097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 33628954 - 33629063
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| |||| || | |||||| || || ||||||||||  |||||| |||||||||| |  |||||    
T  33628954 agggaccaaaagtggaagaatctgaaattacagggacaaaatcaaattttttttttttacagggactaaaaccggaattcgctaatattacagggacaaa 33629053  T
Q  121 aagaagtatt 130  Q
    |||| |||||    
T  33629054 aagaggtatt 33629063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 17606571 - 17606660
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||||||| |||||| ||||||||||  |||| |||||||||||||||  || || ||||||||||  |||||| ||||||||||    
T  17606571 aagggaccaaaagtggaagaatctgaaattacaaggacaaaatctaaatcttttt--ttacagggactaaaaccggaattcgctaatattac 17606660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 39826312 - 39826400
Alignment:
Q  23 ggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||| |||||| ||||||||||| |||| |||||||||||||||  || || ||||||||||   ||||| ||||||||||    
T  39826312 ggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttatttacagggactaaaaccgaaattcgctaatattac 39826400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 39826164 - 39826094
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaa 91  Q
    ||||| |||||||| |||||| ||||||||||| |||| |||||||||||||||| || || |||||||||    
T  39826164 agggatcaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttttttacagggactaaaa 39826094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 39970760 - 39970706
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||| |||||||||| ||||| ||||||||||||||||    
T  39970760 agggaccaaaagtggaagaatctgaaattacatagacaaaatctaaatctttttt 39970706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 48072075 - 48071985
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||| |||||||| || ||| ||||||||||| |||| |||||||||||||||| || || | ||||||||  |||||| ||||||||||    
T  48072075 agggagcaaaagtggaataatatgaaattacagggacaaaatctaaatcttttttattacaggaactaaaaccagaattcgctaatattac 48071985  T

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Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 52058125 - 52058071
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||| ||||||||||| |||||| ||||||||||||||    
T  52058125 agggaccaaaagtggaagaatctgaaattacagggacatagtctaaatctttttt 52058071  T

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Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 7473906 - 7473862
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatcta 65  Q
    |||||||||||||| |||||| |||||||||||||||||||||||    
T  7473906 agggaccaaaagtggaagaatatgaaattacagagacataatcta 7473862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 29696822 - 29696937
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||  |||| ||||| ||| |||||| || ||  |||||||||  |||||| ||||||||||  |||| ||    
T  29696822 agggaccaaaagtggaagaatctgaaattacatggacaaaatct-aatttttttttttacagtgactaaaaccggaattcgctaatattacataaacgaa 29696920  T
Q  121 aagaagtatttagcctt 137  Q
    |||| ||||||| ||||    
T  29696921 aagaggtatttaccctt 29696937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 30299342 - 30299224
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaa-ttctctaatattactgaaacaaaaa 122  Q
    ||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||| | ||| ||| |||||||||| |  || ||||    
T  30299342 gaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttttttaca-ggactaaaa-tcgaagttcgctaatattacagggacgaaaa 30299245  T
Q  123 gaagtatttagccttgttttt 143  Q
    || ||||||| |||| |||||    
T  30299244 gaggtatttacccttattttt 30299224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 30299495 - 30299566
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaac 92  Q
    |||||||||||||| |||||| | ||||||||| |||| |||||||||||||||| || || | ||||||||    
T  30299495 agggaccaaaagtggaagaatctaaaattacagggacaaaatctaaatctttttttttacaggaactaaaac 30299566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 17606422 - 17606368
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||| |||||||||||  ||| ||||||||||||||||    
T  17606422 agggaccaaaagtggaagaatatgaaattacaggaacaaaatctaaatctttttt 17606368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 34749251 - 34749197
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||| ||||||||| | |||| ||||||||||||||||    
T  34749251 agggaccaaaagtggaagaatatgaaattacggggacaaaatctaaatctttttt 34749197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 39970905 - 39970963
Alignment:
Q  17 aagaagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||||||| ||| || | ||||||||| |||| ||||||||||||||||    
T  39970905 aagaagggaccaaaagtggaaggatctaaaattacagggacaaaatctaaatctttttt 39970963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 30252162 - 30252251
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatatta 110  Q
    ||||| ||||| || |||||| ||||||||| | |||| ||||||||||||| || || || ||||||||||  |||||| |||||||||    
T  30252162 agggatcaaaaatggaagaatatgaaattacggggacaaaatctaaatctttatttttacagggactaaaaccagaattcgctaatatta 30252251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 8292914 - 8292847
Alignment:
Q  25 accaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaac 92  Q
    |||||||||| |||||| ||||||| ||| |||| |||||||||||||| | || || ||||||||||    
T  8292914 accaaaagtggaagaatatgaaatttcagggacaaaatctaaatcttttattttacagggactaaaac 8292847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 18462551 - 18462602
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||||||||| |||||| ||||||||| | |||| ||||||||||||||||    
T  18462551 gaccaaaagtggaagaatctgaaattacggggacaaaatctaaatctttttt 18462602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 17501994 - 17502083
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||| ||||||| | |||| ||||||||||| |||| |||||||| ||||||| ||  | ||||||||||  |||||| ||||||||||    
T  17501994 agggactaaaagtggaggaatctgaaattacagggacagaatctaaa-ctttttttttatagggactaaaaccggaattcgctaatattac 17502083  T

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Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 42510128 - 42510039
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||| ||||||| |||||| ||||||||||| |||| ||||||||| | |||| || || ||| ||||||  |||||| ||||||||||    
T  42510128 agggactaaaagtggaagaatatgaaattacagggacaaaatctaaat-tatttttttacagggattaaaaccggaattcgctaatattac 42510039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 43539461 - 43539391
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaa 91  Q
    |||||||||||||| || ||| | ||||||||| |||| |||||||||| ||||| || || |||||||||    
T  43539461 agggaccaaaagtggaacaatataaaattacagggacaaaatctaaatcgttttttttacaaggactaaaa 43539391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 20995787 - 20995751
Alignment:
Q  17 aagaagggaccaaaagtgaaagaatttgaaattacag 53  Q
    ||||||||||||||||||||||||| | |||||||||    
T  20995787 aagaagggaccaaaagtgaaagaatataaaattacag 20995751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 29696671 - 29696568
Alignment:
Q  28 aaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaagaagt 127  Q
    ||||||| |||||| ||||||||| | |||| |||||||||||||||| || ||  |||||||||   ||||| |||||||||| |  || |||||| ||    
T  29696671 aaaagtggaagaatatgaaattacggggacaaaatctaaatctttttt-ttacagagactaaaaccgaaattcgctaatattacagggacgaaaagaggt 29696573  T
Q  128 attta 132  Q
    |||||    
T  29696572 attta 29696568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 10108484 - 10108368
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||  |||||| |||||||||| |  || ||    
T  10108484 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttttttacagggactaaaaccggaattcgctaatattacagggacgaa 10108385  T
Q  121 aagaagtatttagcctt 137  Q
    |||| ||||||| ||||    
T  10108384 aagaggtatttaccctt 10108368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 14820557 - 14820648
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||  |||||| ||||||||||    
T  14820557 aagggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttttttacagggactaaaaccggaattcgctaatattac 14820648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 5554987 - 5554872
Alignment:
Q  17 aagaagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaa 116  Q
    |||||||||||||||||| |||||| |||||||| || |||| ||||| |||||||||| || || ||||||||||  |||||| |||||||||| |  |    
T  5554987 aagaagggaccaaaagtggaagaatatgaaattatagggacaaaatctgaatctttttttttacagggactaaaaccggaattcgctaatattacaggga 5554888  T
Q  117 caaaaagaagtattta 132  Q
    | |||||| |||||||    
T  5554887 cgaaaagaggtattta 5554872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 10108633 - 10108724
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||  |||||  ||||||||||    
T  10108633 aagggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttttttacagggactaaaaccggaatttgctaatattac 10108724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 21148052 - 21147941
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctt-ttttcttgcacggactaaaacttgaattctctaatattactgaaaca 118  Q
    ||||||||||||||| |||||| ||||||||||| |||| |||||||||||| |||| || || ||||||||||  |||||| |||||||||| |  |||    
T  21148052 aagggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatcttttttttttacagggactaaaaccggaattcgctaatattacagggaca 21147953  T
Q  119 aaaagaagtatt 130  Q
    |||||| |||||    
T  21147952 aaaagaggtatt 21147941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 42113098 - 42113009
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| || || |||||||||   |||||| ||||||||||    
T  42113098 agggaccaaaagtgaaagaatcttaaattacagggacataatctaaatctttttt-ttacagggactaaaatcggaattcgctaatattac 42113009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 42606019 - 42606120
Alignment:
Q  23 ggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaa 122  Q
    |||||||||||| |||||||||||||||| | |||| |||||||||||||||| || ||  |||||||||  |||||| |||||||||| |  |||||||    
T  42606019 ggaccaaaagtggaagaatttgaaattacggggacaaaatctaaatctttttttttacattgactaaaaccagaattcgctaatattacagggacaaaaa 42606118  T
Q  123 ga 124  Q
    ||    
T  42606119 ga 42606120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 7689787 - 7689903
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    ||||| |||||||| |||||| ||||||||||| |||| ||| |||||||||||| || ||||||||||||   |||||| |||||||||| |  || ||    
T  7689787 agggatcaaaagtggaagaatctgaaattacagggacaaaatttaaatctttttttttacacggactaaaatcggaattcgctaatattacagggacgaa 7689886  T
Q  121 aagaagtatttagcctt 137  Q
    |||| ||||||| ||||    
T  7689887 aagaggtatttaccctt 7689903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 5555132 - 5555223
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || ||  |||||||||   ||||| ||||||||||    
T  5555132 aagggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttttttacagagactaaaaccgaaattcgctaatattac 5555223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 14820408 - 14820298
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || | ||||||||  |||||| |||||||||| |  || ||    
T  14820408 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttt-ttacaggaactaaaaccggaattcgctaatattacagggacgaa 14820310  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  14820309 aagaggtattta 14820298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 30789773 - 30789892
Alignment:
Q  23 ggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaa 122  Q
    |||||||||||| |||||| ||||||||||| |||| |||||||||||||||  || || ||||||||||  |||||  |||||||||| |  || ||||    
T  30789773 ggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttatttacagggactaaaaccggaatttactaatattacagggacgaaaa 30789872  T
Q  123 gaagtatttagccttgtttt 142  Q
    || ||||||| |||| ||||    
T  30789873 gaggtatttacccttctttt 30789892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 10171407 - 10171497
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||||||||||||| | ||||||||| |||| |||||||||  ||||| || || ||||||||||  |||||| ||||||||||    
T  10171407 agggaccaaaagtgaaagaatctaaaattacagggacaaaatctaaatagttttttttacagggactaaaaccggaattcgctaatattac 10171497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 26136793 - 26136690
Alignment:
Q  27 caaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaagaag 126  Q
    ||||| || |||||| ||||||||||  |||| ||||||||| |||||| || || ||||||||||| |||||| |||||||||| | ||| |||||| |    
T  26136793 caaaattggaagaatctgaaattacaaggacaaaatctaaatttttttttttacagggactaaaactggaattcgctaatattacaggaacgaaaagagg 26136694  T
Q  127 tatt 130  Q
    ||||    
T  26136693 tatt 26136690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 43851778 - 43851668
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    ||||| |||||||| |||||| ||||||||||| |||| |||||||||||||| | || || ||||||||||  |||||| |||||||||| |  || ||    
T  43851778 agggatcaaaagtggaagaatctgaaattacagggacaaaatctaaatcttttgt-ttacagggactaaaaccggaattcgctaatattacagggacgaa 43851680  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  43851679 aagaggtattta 43851668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 26532897 - 26532807
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctt-ttttcttgcacggactaaaacttgaattctctaatatta 110  Q
    ||||| |||||||| || ||||||||||||||| |||| |||||||||||| |||| || || ||||||||||  |||||| |||||||||    
T  26532897 agggatcaaaagtggaaaaatttgaaattacagggacaaaatctaaatcttttttttttacatggactaaaaccggaattcgctaatatta 26532807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 30789621 - 30789532
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||| |||||||| | |||| |||||||||||||||| |||||||||||||||| || || |||||||||   |||||| ||||||||||    
T  30789621 agggatcaaaagtggaggaatctgaaattacagagacaaaatctaaatctttttt-ttacagggactaaaatcggaattcgctaatattac 30789532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 14767622 - 14767567
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||||||||||||| || ||| ||||||||||| |||| ||||||||||||||||    
T  14767622 aagggaccaaaagtggaaaaatctgaaattacagggacaaaatctaaatctttttt 14767567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 17623001 - 17622914
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| | |||||||||| ||| |||||||||||||||  || || |||||||||||  ||||| ||||||||||    
T  17623001 agggaccaaaagtggaagaatctaaaattacaga-acaaaatctaaatcttttt--ttacagggactaaaactgaaattcgctaatattac 17622914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 17623154 - 17623205
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||||||||| |||||||||||||||||  |||| ||||||||||||||||    
T  17623154 gaccaaaagtggaagaatttgaaattacaaggacaaaatctaaatctttttt 17623205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 22494648 - 22494702
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||||||||||||||| |||| | ||||||||| ||||    
T  22494648 agggaccaaaagtggaagaatttgaaattacagggacaaattctaaatctctttt 22494702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 43481581 - 43481669
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatc-ttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||| |||| |||||||||||||||||| |||| ||| |||||| |||||| || ||  |||||||||  |||||| ||||||||||    
T  43481581 gaccaagagtggaagaatttgaaattacagggacaaaatttaaatcttttttttttacagagactaaaaccggaattcgctaatattac 43481669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 2583588 - 2583675
Alignment:
Q  25 accaaaagtgaaagaatttgaaattacagagacataatctaaatc-ttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||| |||||| |||||||| || |||| ||| |||||| |||||| || || || |||||||| |||||| ||||||||||    
T  2583588 accaaaagtggaagaatctgaaattatagggacaaaatttaaatcttttttttttacagggcctaaaactagaattcgctaatattac 2583675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 7689637 - 7689527
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||  |||| |||||||||||||||  || || |||||||| |   ||||| |||||||||| |  || ||    
T  7689637 agggaccaaaagtggaagaatctgaaattacaaggaca-aatctaaatctttttatttacaaggactaaagccgaaattcgctaatattacagggacgaa 7689539  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  7689538 aagaggtattta 7689527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 26136949 - 26137038
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| ||||||||||| |||| ||||||| | |||||| |   | |||||||||||  ||||| ||||||||||    
T  26136949 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaattttttttt-tactagggactaaaactgaaattcactaatattac 26137038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 42113248 - 42113302
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||| |||||||| ||||||||||||||| || |||||||||||| | ||||||    
T  42113248 agggatcaaaagtggaagaatttgaaattaaagggacataatctaattttttttt 42113302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 18044093 - 18044202
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    ||||| |||||| |||||||| ||||||||||| |||| ||| ||| | |||||  || || ||||||||||  |||||| |||||||||| |  || ||    
T  18044093 agggatcaaaagcgaaagaatctgaaattacagggacaaaatataattattttt--ttacatggactaaaaccggaattcgctaatattacagggacgaa 18044190  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  18044191 aagaggtattta 18044202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 41600222 - 41600338
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||  || || ||||||||||  |||||| |||||||||| |  |||||    
T  41600222 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttatttacagggactaaaaccggaattcgctaatattacagggacaaa 41600321  T
Q  121 aagaagtatttagcctt 137  Q
    |||| ||||||| ||||    
T  41600322 aagaggtatttaccctt 41600338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 23704925 - 23705035
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||  |||||| |||||||||| || || ||    
T  23704925 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttt-ttacagggactaaaaccggaattcgctaatattacagagacgaa 23705023  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  23705024 aagaggtattta 23705035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 25772595 - 25772684
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatatta 110  Q
    |||||||||||||  |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||| |||||| |||||||||    
T  25772595 agggaccaaaagtagaagaatctgaaattacagggacaaaatctaaatctttttttttacagggactaaaactggaattcactaatatta 25772684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 28218427 - 28218538
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||  || || ||||||||||  |||||| |||||||||| |  || ||    
T  28218427 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttatttacagggactaaaaccggaattcgctaatattacagggacgaa 28218526  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  28218527 aagaggtattta 28218538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 20419650 - 20419561
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatatta 110  Q
    ||||||||||| || |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||  |||||| |||||||||    
T  20419650 agggaccaaaaatggaagaatatgaaattacagggacaaaatctaaatctttttttttacagggactaaaaccggaattcgctaatatta 20419561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 28218293 - 28218176
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctt-ttttcttgcacggactaaaacttgaattctctaatattactgaaacaa 119  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||| |||| || || ||||||||||  |||||| |||||||||| |  || |    
T  28218293 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatcttttttttttacagggactaaaaccggaattcgctaatattacagggacga 28218194  T
Q  120 aaagaagtatttagcctt 137  Q
    ||||| ||||||| ||||    
T  28218193 aaagaggtatttaccctt 28218176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 12006804 - 12006915
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||  || || |||||||||   |||||| ||||||||||   ||| ||    
T  12006804 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttatttacagggactaaaatcggaattcgctaatattacatgaacgaa 12006903  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  12006904 aagaggtattta 12006915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 23383764 - 23383875
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||| ||| |||||| ||||||||||| |||| |||||||||||||||| || || |||||||||   |||||| |||||||||| |  || ||    
T  23383764 agggaccaaaggtggaagaatatgaaattacagggacaaaatctaaatcttttttttttcagggactaaaatcagaattcactaatattacagggacgaa 23383863  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  23383864 aagaggtattta 23383875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 48672543 - 48672654
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| || | |||||||||||||||  || || ||||||||||   ||||| |||||||||| || || ||    
T  48672543 agggaccaaaagtggaagaatctgaaattacagggataaaatctaaatctttttatttacagggactaaaaccgaaattcgctaatattacagagacgaa 48672642  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  48672643 aagaggtattta 48672654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 20963760 - 20963868
Alignment:
Q  23 ggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaa 122  Q
    ||||||||||||||||||| ||||||||||| |||  ||||||||| ||| || || || ||||||||||  |||||| |||||||||| |  |||||||    
T  20963760 ggaccaaaagtgaaagaatctgaaattacagggactaaatctaaat-tttatttttacagggactaaaaccggaattcgctaatattacagggacaaaaa 20963858  T
Q  123 gaagtattta 132  Q
    || |||||||    
T  20963859 gaggtattta 20963868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 7658083 - 7658031
Alignment:
Q  23 ggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||||||||    
T  7658083 ggaccaaaagtgtaagaatttgaaattacatggacataatctaaatctttttt 7658031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 20419800 - 20419912
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatc-ttttttcttgcacggactaaaacttgaattctctaatattactgaaacaa 119  Q
    |||||||||||||  |||||| ||||||||||| |||| |||||||||| |||||| || || ||||||||||  ||||||  ||||||||| |  ||||    
T  20419800 agggaccaaaagtagaagaatctgaaattacagggacaaaatctaaatcttttttttttacagggactaaaaccggaattcgttaatattacagggacaa 20419899  T
Q  120 aaagaagtattta 132  Q
    ||||| |||||||    
T  20419900 aaagaggtattta 20419912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 38879838 - 38879726
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctt-ttttcttgcacggactaaaacttgaattctctaatattactgaaacaa 119  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||| |||| || || | ||||||| | |||||| |||||||||| |  || |    
T  38879838 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatcttttttttttacaggaactaaaattggaattcgctaatattacagggacga 38879739  T
Q  120 aaagaagtattta 132  Q
    ||||| |||||||    
T  38879738 aaagaggtattta 38879726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 20458955 - 20459065
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || | ||| ||||  |||||| |||||||||| |  || ||    
T  20458955 agggaccaaaagtggaagaatctgaaattacagtgacaaaatctaaatctttttttttacaggtact-aaaccggaattccctaatattacagggacgaa 20459053  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  20459054 aagaggtattta 20459065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 20963609 - 20963518
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctt-ttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| | ||||||||| |||  |||||||||||| |||| || || ||||||||||| |||||| ||||||||||    
T  20963609 agggaccaaaagtggaagaatctaaaattacagggactaaatctaaatcttttttttttacagggactaaaactagaattcactaatattac 20963518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 24195060 - 24195131
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaac 92  Q
    |||||||||||||| |||||| ||||||||||  |||| |||||||||||||||| || || ||||||||||    
T  24195060 agggaccaaaagtggaagaatatgaaattacaaggacaaaatctaaatctttttttttacagggactaaaac 24195131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 1250470 - 1250560
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| |||||||| || |||| ||||||||||||||   || ||  |||||||||| |||||| ||||||||||    
T  1250470 agggaccaaaagtggaagaatatgaaattaaagggacaaaatctaaatcttttagtttacagagactaaaactggaattcgctaatattac 1250560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 6465968 - 6465879
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| ||||||||||   ||||||||||||| |||||| || || ||||||||||  |||||| ||||||||||    
T  6465968 agggaccaaaagtggaagaatctgaaattacaagaacataatctaaatatttttt-ttacagggactaaaaccggaattcgctaatattac 6465879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 10409638 - 10409727
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||| |||||||| |||||| | |||||||||||||| |||||||||||||||| || || |||||||||   |||||| ||||||||||    
T  10409638 agggatcaaaagtggaagaatctaaaattacagagacaaaatctaaatctttttt-ttacagggactaaaatcggaattcgctaatattac 10409727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 16995312 - 16995203
Alignment:
Q  22 gggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaa 121  Q
    ||||||||||||| |||||| ||||||||||| |||| ||||||||| |||||| || || | ||||||||   ||||| |||||||||| || || |||    
T  16995312 gggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatatttttt-ttacaggaactaaaaccgaaattcgctaatattacagagacgaaa 16995214  T
Q  122 agaagtattta 132  Q
    ||| |||||||    
T  16995213 agaggtattta 16995203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 23383614 - 23383502
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgc-acggactaaaacttgaattctctaatattactgaaacaa 119  Q
    |||||| |||| || |||||| |||||||| || |||| |||||||||||||||| ||   | ||||||||||  |||||| |||||||||| || || |    
T  23383614 agggacaaaaaatggaagaatatgaaattatagggacaaaatctaaatcttttttttttatagggactaaaaccggaattcactaatattacagagacga 23383515  T
Q  120 aaagaagtattta 132  Q
    |||||||||||||    
T  23383514 aaagaagtattta 23383502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 23704775 - 23704665
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| ||| |||||||||||| || ||  || ||||||  |||||| |||||||||| |  || ||    
T  23704775 agggaccaaaagtggaagaatctgaaattacagggacaaaatgtaaatctttttt-ttacagtgagtaaaaccggaattcgctaatattacagggacgaa 23704677  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  23704676 aagaggtattta 23704665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 20458805 - 20458716
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| ||||||||||| |||| ||||||||| |||||  || || ||||||||||  ||||||  |||||||||    
T  20458805 agggaccaaaagtggaagaatctgaaattacagcgacaaaatctaaat-tttttatttacagggactaaaaccggaattcgttaatattac 20458716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 33162806 - 33162916
Alignment:
Q  28 aaaagtgaaagaatttgaaattacagagacataatctaaatc-ttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaagaag 126  Q
    ||||||| |||||||||||||||||  ||||||||| ||||| |||||| ||  | ||||||||||   ||||| |||||||||| || || |||||| |    
T  33162806 aaaagtggaagaatttgaaattacaatgacataatccaaatcttttttttttataaggactaaaacagaaattcgctaatattacagagacgaaaagagg 33162905  T
Q  127 tatttagcctt 137  Q
    |||||| ||||    
T  33162906 tatttaccctt 33162916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 38879988 - 38880042
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||| ||||||||||| |||| ||||||||| ||||||    
T  38879988 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatttttttt 38880042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 44816949 - 44816895
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||| ||||||||||| |||| |||| |||||||||||    
T  44816949 agggaccaaaagtggaagaatctgaaattacagggacaaaatcaaaatctttttt 44816895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 48648375 - 48648306
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaa 91  Q
    ||||||||||| ||||| ||| ||||||||||| |||| ||||||||||| ||||||| || |||||||||    
T  48648375 agggaccaaaaatgaaaaaatctgaaattacagggacaaaatctaaatct-ttttcttacatggactaaaa 48648306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 48672393 - 48672339
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||| |||||||| |||||| |||||||||||||||  ||||||||||||||||    
T  48672393 agggatcaaaagtggaagaatctgaaattacagagacgaaatctaaatctttttt 48672339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 24194978 - 24194910
Alignment:
Q  21 agggaccaaaagtgaaag-aatttgaaattacagagacataatctaaatcttttttcttgcacggacta 88  Q
    ||||||||||||||| || ||| ||||||||||| |||| |||||||||||||||| || || ||||||    
T  24194978 agggaccaaaagtgagaggaatctgaaattacagggacaaaatctaaatctttttttttacaaggacta 24194910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 12006654 - 12006544
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    ||||| |||||||| |||||| ||||||||||| |||| ||||| ||| |||||| || || |||||||||   |||||| |||||||||| |  || ||    
T  12006654 agggatcaaaagtggaagaatctgaaattacagggacaaaatct-aatttttttttttacagggactaaaatcggaattcgctaatattacagggacgaa 12006556  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  12006555 aagaggtattta 12006544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 25772477 - 25772423
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||| |||||||| |||||| ||||||||||  |||| ||||||||||||||||    
T  25772477 agggaacaaaagtggaagaatatgaaattacaaggacaaaatctaaatctttttt 25772423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 41600072 - 41599982
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||| |||| ||| |||||| ||||||||||| |||| ||||||||| |||||| ||  | ||||||||||   ||||| ||||||||||    
T  41600072 agggatcaaatgtggaagaatctgaaattacagggacaaaatctaaatatttttttttatatggactaaaaccgaaattcgctaatattac 41599982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 48648493 - 48648547
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||| ||||| |||||| | |||||||| ||||| ||||||||||||||||    
T  48648493 agggaccagaagtggaagaatctaaaattacatagacaaaatctaaatctttttt 48648547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 10409492 - 10409435
Alignment:
Q  17 aagaagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttt 74  Q
    |||||||||| ||||||  |||||| ||||||||||  |||| |||||||||||||||    
T  10409492 aagaagggactaaaagtagaagaatctgaaattacaaggacaaaatctaaatcttttt 10409435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 108
Target Start/End: Complemental strand, 7842546 - 7842467
Alignment:
Q  28 aaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatat 108  Q
    ||||||| | |||| ||||||||||| |||| |||||||| ||||||| || || ||||||||||  |||||| |||||||    
T  7842546 aaaagtggaggaatctgaaattacagggacagaatctaaa-ctttttttttacagggactaaaaccagaattcgctaatat 7842467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 23806216 - 23806327
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||   ||||| |||||||||| |  |||||    
T  23806216 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttttttacagggactaaaaccgaaattcgctaatattacagggacaaa 23806315  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  23806316 aagaggtattta 23806327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 42670983 - 42671094
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| || ||| ||||||||||| ||||||||||||||| ||||| || || |||||||||||  ||||| |||||| ||| |  |||||    
T  42670983 agggaccaaaagtggaaaaatatgaaattacagggacataatctaaatccttttttttacagggactaaaactgaaattcgctaatactacagggacaaa 42671082  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  42671083 aagaggtattta 42671094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 26236241 - 26236151
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||  | || ||||||||||  |||||| ||||||||||    
T  26236241 agggaccaaaagtgaaagaatctgaaattacagggacaaaatataaatctttttttatacagggactaaaaccagaattcgctaatattac 26236151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 19251584 - 19251462
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||   ||||| |||||||||| |  || ||    
T  19251584 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttt-ttacagggactaaaaccgaaattcgctaatattacagggacgaa 19251486  T
Q  121 aagaagtatttagccttgttttta 144  Q
    |||| ||||| | |||| ||||||    
T  19251485 aagaggtattaaccctttttttta 19251462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 39878213 - 39878126
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||| | |||| || || ||||||||||  |||||| ||||||||||    
T  39878213 gaccaaaagtggaagaatctgaaattacagatacataatctaaatatctttttttacagggactaaaaccggaattcgctaatattac 39878126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 17463355 - 17463445
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||| |||||||| |||||| || |||||||| |||| |||||||||||||||| || || ||||||||||  |||||| ||||||||||    
T  17463355 agggatcaaaagtggaagaatatgcaattacagggacaaaatctaaatctttttttttacagggactaaaaccggaattcgctaatattac 17463445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 26135931 - 26135841
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||  |||||| ||||||||||| |||| |||||||||||||||| || || |||||||||   |||||| ||||||||||    
T  26135931 agggaccaaaagtagaagaatctgaaattacagggacaaaatctaaatctttttttttacagggactaaaatcggaattcgctaatattac 26135841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 20499011 - 20499080
Alignment:
Q  23 ggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaac 92  Q
    ||||||||||||||||||| ||||||||||| |||| |||||||||||||||| || ||  |||||||||    
T  20499011 ggaccaaaagtgaaagaatctgaaattacagggacaaaatctaaatctttttttttacagtgactaaaac 20499080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 23854797 - 23854712
Alignment:
Q  26 ccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||   ||||| ||||||||||    
T  23854797 ccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttttttacagggactaaaaccgaaattcgctaatattac 23854712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 22263306 - 22263251
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||||||||||||| |||||| ||||||||||| |||| ||||||||||||||||    
T  22263306 aagggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttt 22263251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 22263455 - 22263573
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatc--ttttttcttgcacggactaaaacttgaattctctaatattactgaaaca 118  Q
    |||||||||||||| |||||| ||||||||||| |||| ||||| ||||  |||||| || ||  |||||||||  |||||| |||||||||| | |||     
T  22263455 agggaccaaaagtggaagaatatgaaattacagggacaaaatctgaatctttttttttttacagagactaaaaccggaattcgctaatattacaggaacg 22263554  T
Q  119 aaaagaagtatttagcctt 137  Q
    |||||| ||||||| ||||    
T  22263555 aaaagaggtatttaccctt 22263573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 26236359 - 26236469
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    ||||||||||| || |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||   ||||| |||||||||| |  || ||    
T  26236359 agggaccaaaaatggaagaatctgaaattacagggacaaaatctaaatctttttt-ttccaaggactaaaaccgaaattcgctaatattacagggacgaa 26236457  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  26236458 aagaggtattta 26236469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 19251734 - 19251823
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||| |||||| |||||| ||||||||||  |||| |||||||||||||||| || || ||||||||||  |||||| ||||||||||    
T  19251734 agggaccgaaagtggaagaatatgaaattacaaggacagaatctaaatctttttt-ttacagggactaaaaccggaattcactaatattac 19251823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 13254607 - 13254500
Alignment:
Q  25 accaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaaga 124  Q
    ||||||||||||||||| ||||||||||  |||| |||||||||||||| | || || ||| ||||||   ||||| |||||||||| | |||  |||||    
T  13254607 accaaaagtgaaagaatctgaaattacaaggacaaaatctaaatcttttattttacagggagtaaaaccaaaattcgctaatattacaggaacggaaaga 13254508  T
Q  125 agtattta 132  Q
     |||||||    
T  13254507 ggtattta 13254500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 17850700 - 17850590
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    ||||| |||||||| |||||| | |||||||||||||| |||||||||||||||| ||  | |||||||||   |||||| |||||||||| |  || ||    
T  17850700 agggatcaaaagtggaagaatcttaaattacagagacaaaatctaaatctttttt-ttatagggactaaaatcggaattcgctaatattacagggacgaa 17850602  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  17850601 aagaggtattta 17850590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 20498859 - 20498750
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||| ||||| |||||||||||||| |||||| || || ||||||||||   ||||| ||||||||||  | || ||    
T  20498859 agggaccaaaagtggaagaatctgaaa-tacagggacataatctaaatatttttt-ttacagggactaaaaccgtaattcgctaatattacatagacgaa 20498762  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  20498761 aagaggtattta 20498750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 26560669 - 26560614
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||||||||||||| |||||| ||||||||||| |||  ||||||||||||||||    
T  26560669 aagggaccaaaagtggaagaatctgaaattacagggactaaatctaaatctttttt 26560614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 30959943 - 30960025
Alignment:
Q  28 aaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||| | |||| ||||||||||| ||||||||||||| ||||||| || || ||||||||||  |||||| ||||||||||    
T  30959943 aaaagtggaggaatatgaaattacagggacataatctaaa-ctttttttttacatggactaaaaccggaattcgctaatattac 30960025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 33290164 - 33290073
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||||||| | || | ||||||||||  |||| ||||||||| |||| | || || ||||||||||| |||||| ||||||||||    
T  33290164 aagggaccaaaagtggaggagtatgaaattacaaggacagaatctaaattttttattttacagggactaaaactggaattcgctaatattac 33290073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 17850850 - 17850972
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||| | ||||  || ||  |||||||||   ||||| |||||||||| |  || ||    
T  17850850 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaaagcattttatttacagtgactaaaaccgaaattcgctaatattacagggacgaa 17850949  T
Q  121 aagaagtatttagccttgttttt 143  Q
    |||| ||||||| |||| |||||    
T  17850950 aagaggtatttaccctttttttt 17850972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 23854930 - 23854984
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||| | |||||||||||||| ||||||||| ||||||    
T  23854930 agggaccaaaagtggaagaatataaaattacagagacaaaatctaaatttttttt 23854984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 30390573 - 30390483
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| ||||||||||| |||| ||||||| | |||||| || || ||| |||||   |||||| ||||||||||    
T  30390573 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaattttttttttttacagggattaaaatcggaattcgctaatattac 30390483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 34548684 - 34548577
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaag 123  Q
    ||||||| ||| || ||| ||||||||||  |||| |||||||||||||||| || || ||||||||||   ||||| |||||||||| |  || |||||    
T  34548684 gaccaaaggtggaacaatatgaaattacatggacaaaatctaaatctttttt-ttacagggactaaaaccaaaattcactaatattacagggacgaaaag 34548586  T
Q  124 aagtattta 132  Q
    |||||||||    
T  34548585 aagtattta 34548577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 15106181 - 15106091
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| || ||| | ||||||||| |||| |||||||||||||||  || || ||| ||||||   ||||| ||||||||||    
T  15106181 agggaccaaaagtggaataatctaaaattacagggacaaaatctaaatctttttatttacagggattaaaaccgaaattcgctaatattac 15106091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 15106331 - 15106385
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||| |||||||| |||||| ||||||||||| |||| ||||||||| ||||||    
T  15106331 agggatcaaaagtggaagaatctgaaattacagggacaaaatctaaatttttttt 15106385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 21482144 - 21482233
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||| ||||||| |||||| | |||| |||| |||| |||||||| || |||| || || ||||||||||| |||||| ||||||||||    
T  21482144 agggactaaaagtggaagaatctaaaatgacagggacaaaatctaaa-ctatttttttacaaggactaaaactggaattcgctaatattac 21482233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 21481081 - 21481025
Alignment:
Q  55 gacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| || || ||||||||||| ||||||  |||||||||    
T  21481081 gacataatctaaatttttttttttacaaggactaaaactggaattcgttaatattac 21481025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 26136087 - 26136135
Alignment:
Q  27 caaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||| |||||| ||||||||||  |||| ||||||||||||||||    
T  26136087 caaaagtggaagaatatgaaattacaatgacaaaatctaaatctttttt 26136135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 19284243 - 19284124
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||| | || |  ||||||||||| |||||| ||||||||||   ||| ||    
T  19284243 agggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatcttttattttacgtggactaaaactggaattcgctaatattacatgaacgaa 19284144  T
Q  121 aagaagtatttagccttgttt 141  Q
    |||| ||||||| ||||||||    
T  19284143 aagaggtattta-ccttgttt 19284124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 9481296 - 9481185
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    ||||||||||| || |||||| ||||||||||| ||||||||||||||| ||||| || || ||||||||||  |||||| |||||||||| |  || ||    
T  9481296 agggaccaaaattggaagaatatgaaattacagggacataatctaaatccttttttttacagggactaaaaccggaattcgctaatattacagggacgaa 9481197  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  9481196 aagaggtattta 9481185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 26385392 - 26385281
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| | ||||||||| |||| ||||||||||||||||  | || ||||||||||  |||||| |||||||||| || || ||    
T  26385392 agggaccaaaagtggaagaatataaaattacagggacaaaatctaaatctttttttctacatggactaaaaccagaattcgctaatattacagagacgaa 26385293  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  26385292 aagaggtattta 26385281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 111
Target Start/End: Original strand, 32017768 - 32017857
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| || || ||||||||||  |||||| ||||||||||    
T  32017768 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatctttttt-ttacagggactaaaaccggaattcgctaatattac 32017857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 18500428 - 18500340
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatatta 110  Q
    |||||||||||||| |||||| ||||||||||| |||| ||||||||||| ||||||| || ||||||||||   ||||| |||||||||    
T  18500428 agggaccaaaagtggaagaatatgaaattacagggacaaaatctaaatct-ttttcttacagggactaaaaccgaaattcgctaatatta 18500340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 24732202 - 24732317
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||  |||| |||||||||||||||| || || ||||| ||| | |||||| |||||||||| |  || ||    
T  24732202 agggaccaaaagtggaagaatatgaaattacatggacaaaatctaaatctttttttttacagggact-aaattggaattcgctaatattacagggacgaa 24732300  T
Q  121 aagaagtatttagcctt 137  Q
    |||| ||||||| ||||    
T  24732301 aagaggtatttaccctt 24732317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 17142788 - 17142737
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  17142788 gaccaaaagtggaagaatttgaaattacagggacataatctaaatttttttt 17142737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 3230129 - 3230216
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||||||||| |||||||| |  |||| |||||||||||||| | || || |||||||||   |||||| ||||||||||    
T  3230129 gaccaaaagtgaaagaatatgaaattatatggacaaaatctaaatcttttattttacagggactaaaatcggaattcgctaatattac 3230216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 9481445 - 9481500
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||||||||||||| |||||| ||||||||||  |||| ||||||||||||||||    
T  9481445 aagggaccaaaagtggaagaatctgaaattacaaggacaaaatctaaatctttttt 9481500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 9154990 - 9154924
Alignment:
Q  25 accaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaa 91  Q
    ||||||| || |||||| ||||||||||| |||| |||||||||||||||| || || |||||||||    
T  9154990 accaaaactggaagaatctgaaattacagggacaaaatctaaatctttttttttacagggactaaaa 9154924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 33714601 - 33714547
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||| ||||||||||  |||| ||||||||||||||||    
T  33714601 agggaccaaaagtggaagaatatgaaattacaaggacaaaatctaaatctttttt 33714547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 10321844 - 10321737
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    ||||| |||||||| |||||| ||||||||||| || |||||||||   | |||| || || ||||||||||  |||||| |||||||||| |  || ||    
T  10321844 agggagcaaaagtgtaagaatatgaaattacagggatataatctaa---tattttttttcagggactaaaaccggaattcgctaatattacagggacgaa 10321748  T
Q  121 aagaagtattt 131  Q
    |||||||||||    
T  10321747 aagaagtattt 10321737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 10321997 - 10322049
Alignment:
Q  23 ggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    ||||||||||||||||||| ||||||||||| |||||||| ||| | ||||||    
T  10321997 ggaccaaaagtgaaagaatctgaaattacagggacataatttaattttttttt 10322049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 30459000 - 30458961
Alignment:
Q  36 aagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  30459000 aagaatctgaaattacagtgacataatctaaatctttttt 30458961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 14680994 - 14680949
Alignment:
Q  23 ggaccaaaagtgaaagaatttgaaattacagagacataatctaaat 68  Q
    |||||||||||| |||||| |||||||||| ||||| |||||||||    
T  14680994 ggaccaaaagtggaagaatatgaaattacaaagacaaaatctaaat 14680949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 30618076 - 30618023
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttt 74  Q
    |||||||||||||| || ||| ||||||||||| |||| ||||||||| |||||    
T  30618076 agggaccaaaagtggaacaatatgaaattacagggacaaaatctaaattttttt 30618023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 26385541 - 26385649
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaaaag 123  Q
    ||||||||||| |||||| ||||||| |||  |||  |||||||||||| || || || |||||||||   |||||| |||||||||| |  || |||||    
T  26385541 gaccaaaagtggaagaatatgaaattgcaggaacaacatctaaatctttgtttttacagggactaaaatcggaattcgctaatattacagggacgaaaag 26385640  T
Q  124 aagtattta 132  Q
    | |||||||    
T  26385641 aggtattta 26385649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 30459168 - 30459217
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||||||| ||||||||||  |||||||||  ||||||||||    
T  30459168 gaccaaaagtgaaagaatctgaaattacaatgacataatc--aatctttttt 30459217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 8586 - 8697
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| | ||||||||| |||| |||||||||||||||| ||  | ||||||||||  |||||| |||||||| | | ||||||    
T  8586 agggaccaaaagtggaagaatctaaaattacagggacaaaatctaaatctttttttttaaagggactaaaaccggaattcgctaatattgcaggaacaaa 8685  T
Q  121 aagaagtattta 132  Q
    ||| ||||||||    
T  8686 aagcagtattta 8697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 12248 - 12336
Alignment:
Q  23 ggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    |||||||||||| |||||| ||||||||||| |||| |||||||||||||||| ||  | ||||||||||  |||||| ||||||||||    
T  12248 ggaccaaaagtggaagaatctgaaattacagggacaaaatctaaatctttttttttatagggactaaaaccggaattcgctaatattac 12336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 1524 - 1470
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctttttt 75  Q
    |||||||||||||| |||||| ||||||||||| |||||||||||||||||||||    
T  1524 agggaccaaaagtggaagaatctgaaattacagggacataatctaaatctttttt 1470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 1674 - 1719
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaa 66  Q
    |||||||||||||| |||||| ||||||||||  ||||||||||||    
T  1674 agggaccaaaagtggaagaatctgaaattacaaggacataatctaa 1719  T

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Target: scaffold0449 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 7340 - 7250
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||| |||||| |||||| ||||||||||| |||| |||||||||||||||| || || | ||||| ||  |||||| ||||||||||    
T  7340 agggaccgaaagtggaagaatatgaaattacagggacaaaatctaaatctttttttttacaggaactaacaccagaattcgctaatattac 7250  T

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Target: scaffold0449; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 7466 - 7554
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatctaaatc-ttttttcttgcacggactaaaacttgaattctctaatattac 111  Q
    ||||||||||  |||||| ||||||||||| |||| |||||||||| |||||| || || ||||||||||  |||||| ||||||||||    
T  7466 gaccaaaagtagaagaatctgaaattacagggacaaaatctaaatcttttttttttacagggactaaaaccggaattcgctaatattac 7554  T

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Target: scaffold0352 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 4782 - 4693
Alignment:
Q  20 aagggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatatt 109  Q
    ||||||||||||||| | |||| ||||||||||| |||| ||||||||  |||||| ||  | ||||||||||| |||||| ||||||||    
T  4782 aagggaccaaaagtggaggaatctgaaattacagggacagaatctaaacttttttttttatagggactaaaactggaattcgctaatatt 4693  T

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Target: scaffold0361 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 4827 - 4937
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatcttttttcttgcacggactaaaacttgaattctctaatattactgaaacaaa 120  Q
    |||||||||||||| |||||| ||||||||||  |||| |||||||||||| ||| || || ||| ||||||  |||||  |||||||||| |  || ||    
T  4827 agggaccaaaagtggaagaatatgaaattacaaggacaaaatctaaatcttattt-ttacagggattaaaaccggaatttgctaatattacagggacgaa 4925  T
Q  121 aagaagtattta 132  Q
    |||| |||||||    
T  4926 aagaggtattta 4937  T

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Target: scaffold0361; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 4677 - 4553
Alignment:
Q  21 agggaccaaaagtgaaagaatttgaaattacagagacataatctaaatctt-ttttcttgcacggactaaaacttgaattctctaatattactgaaacaa 119  Q
    |||||||||||||  |||||| | ||||||||| |||| ||| |||||||| |||| || || |||||||||   |||||| ||||||||||    || |    
T  4677 agggaccaaaagtagaagaatctcaaattacagggacaaaatttaaatcttttttttttacagggactaaaatcggaattcgctaatattacaaggacga 4578  T
Q  120 aaagaagtatttagccttgttttta 144  Q
    ||||| ||||||| ||||| |||||    
T  4577 aaagaggtatttacccttgatttta 4553  T

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Target: scaffold0176 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 15899 - 15939
Alignment:
Q  24 gaccaaaagtgaaagaatttgaaattacagagacataatct 64  Q
    |||||||||||||||||| ||||||||||| |||| |||||    
T  15899 gaccaaaagtgaaagaatatgaaattacagggacaaaatct 15939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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