View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14033_low_7 (Length: 511)
Name: NF14033_low_7
Description: NF14033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14033_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 12 - 495
Target Start/End: Complemental strand, 34460539 - 34460056
Alignment:
| Q |
12 |
atgaatatgacacatttccttttactaagattgcaatttataaatcaacttaggaccacgaaaacaaaatgaagacgtcaacccacttttttcctatgga |
111 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34460539 |
atgaatatgtcacatttccttttactaagattgcaatttataaatcaacttaggaccacgaaaacaaaatgcagacgtcaacccacttttttcctatgga |
34460440 |
T |
|
| Q |
112 |
tttgatttactaatccacttttatgagaaagtgatgggccatattttgcaaaaagaccctgcatttgcattaaagaatttcaaaacctacaccaaccaat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34460439 |
tttgatttactaatccacttttatgagaaagtgatgggccatattttgcaaaaagaccctgcatttgcattaaagaatttcaaaacctacaccaaccaat |
34460340 |
T |
|
| Q |
212 |
tgtataaagattctctcaaatattcaattttgtatgtatgtaatttcaagattccaaattgataaacatcgatcataccaaaagtaggggccctgaaatc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34460339 |
tgtataaagattctctcaaatattcaattttgtatgtatgtaatttcaagattccaaattgataaacatcgatcataccaaaagtaggggccctgaaatc |
34460240 |
T |
|
| Q |
312 |
catttagctagagcaatatcttccatgtgggattatttctgcttnnnnnnnntattaatgctttgattattttttgttaattgcactttacattttcaac |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34460239 |
catttagctagagcaatatcttccatgtgggattatttctgcttaaaaaaaatattaatgctttgattattttttgttaattgcactttacattttcaac |
34460140 |
T |
|
| Q |
412 |
ccggttgattctgaaatctgaagtaatttaagtgtgtttaaaatatattcgtagtgtttattttctctttgaattggtggcttg |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34460139 |
ccggttgattctgaaatctgaagtaatttaagtgtgtttaaaatatattcgtagtgtttattttctctttgaattggtggcttg |
34460056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University