View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14033_low_8 (Length: 427)
Name: NF14033_low_8
Description: NF14033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14033_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 299 - 402
Target Start/End: Complemental strand, 38126468 - 38126354
Alignment:
| Q |
299 |
cacattttatcagagaaaaagagcgattcaacttcaaaaagcaagctcaactgaaat-----------gaaaaagagtcaaagatactcacaatcattcc |
387 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
38126468 |
cacatttgatcagagaaaattagcgatgcaacttcaaaaagcaagctcagctgaaatgaacatcatcagaaaaagagtagaagatactcacaatcattcc |
38126369 |
T |
|
| Q |
388 |
agcatgagcacacat |
402 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38126368 |
agcatgagcacacat |
38126354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 410
Target Start/End: Complemental strand, 38118282 - 38118228
Alignment:
| Q |
356 |
gaaaaagagtcaaagatactcacaatcattccagcatgagcacacatgtagaaat |
410 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38118282 |
gaaaaagagtagaagatactcacaatcattccagcatgagcacacatgtagaaat |
38118228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 377 - 410
Target Start/End: Original strand, 37590833 - 37590866
Alignment:
| Q |
377 |
acaatcattccagcatgagcacacatgtagaaat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
37590833 |
acaatcattccagcatgagcacacatgtagaaat |
37590866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University