View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_high_11 (Length: 487)
Name: NF14034_high_11
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 37 - 485
Target Start/End: Complemental strand, 51707910 - 51707464
Alignment:
| Q |
37 |
ggtaagaggatattcttcaaaaactaacatcaatattcacctgtcttcatcaatgttccaacactacgtatcatcataagctcaatttcaatctcctcct |
136 |
Q |
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| T |
51707910 |
ggtaagaggatattcttcaaaaactaacatcaatattcacctgtcttcatcaatgttccaacactacgtatcatcataagctcaatttcaatctccccct |
51707811 |
T |
|
| Q |
137 |
cactattttcgagtacgatcatcatcaaa-ttcatcaagttgttgcaatgccgataatatatatttctccaccacattgttttgtcaatgcgaatcaatt |
235 |
Q |
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| T |
51707810 |
cactattttcgagtacgatcatcatcaaaattcatcaagttgttgcaatgccgataatatatatttctccaccacattgttttgtcaatgcgaatcaatt |
51707711 |
T |
|
| Q |
236 |
tgttattagttccag-agttaacaaggttaaatttaattttttctggtgttatttgtttatgaggattgattttaccattaaaaaaggccgaacaataca |
334 |
Q |
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|||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51707710 |
tgttattagttctaggagttaacaaggttaaagttaattttttctggtgttatttgtttatgaggattgattttaccattaaaaaaggccgaacaacaca |
51707611 |
T |
|
| Q |
335 |
atttattatctgcttgtcttccatttatgtataattagtctatcaacaaacttaggctatatttgttattgactttcttgagcttatctacaggtacata |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| || || |
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| T |
51707610 |
atttattatctgcttgtcttccatttatgtataattagtctatcgacaaacttagtctatatttgttattgactttcttgagcttatctacggg----ta |
51707515 |
T |
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| Q |
435 |
catacactggtgagactcccacaacatatgctttaaggcaaaagttaaagc |
485 |
Q |
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| T |
51707514 |
catacactggtgagactcccacaacatatgctttaaggcaaaagttaaagc |
51707464 |
T |
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