View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14034_high_12 (Length: 455)
Name: NF14034_high_12
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 13787883 - 13788325
Alignment:
| Q |
1 |
tgaacaatacttacaaattttagaaatattacattaaa-ggaaaattat-aggaaattctctcattttatagggagtcgtgaacaaaacctacaaatttt |
98 |
Q |
| |
|
||||||||||||| |||||||| ||||||| ||||||| |||||||||| ||||| ||||||||||||||||| | |||||||||| || |||||||||| |
|
|
| T |
13787883 |
tgaacaatacttaaaaattttaaaaatatttcattaaaaggaaaattattaggaagttctctcattttataggaa-tcgtgaacaatacatacaaatttt |
13787981 |
T |
|
| Q |
99 |
agaaatattaaattaaaaggaaaattataaggaacaaagataattatacatgactaaaaactattcagttttgaatttattatcttttacacactagtga |
198 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13787982 |
agaaatattacattaaaaggaaaattataaggaacaaagataatcatacatgactaaaaactattcagttttgaatttattatcttttacacactagtga |
13788081 |
T |
|
| Q |
199 |
tgatgactgaaatggattttattttagtatattttattccatgcatattgcacgagtaatact---actatatcctagttgaagtactcaagttatggaa |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13788082 |
tgatgactgaaatggattttattttagtatattttattccatgcatattgcacgagtaatactactactatatcctagttgaagtactcaagttatggaa |
13788181 |
T |
|
| Q |
296 |
aatgtgagatacgcattattgatgtaaaaatggaatgttgtgtgttctctttttgtttgcaggatcttcatggctagatatacattacattgcccttgtc |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13788182 |
aatgtgagatacgcattattgatgtaaaaatggaatgttgtgtgttctctttttgtttgcaggatcttcatggctagatatacattgcattgcccttgtc |
13788281 |
T |
|
| Q |
396 |
cataatatatgggtcctctttgtagggacgatagagttccaatc |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13788282 |
cataatatatgggtcctctttgtagggacgatagagttccaatc |
13788325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 13787801 - 13787869
Alignment:
| Q |
53 |
aattctctcattttatagggagtcgtgaacaaaacctacaaattttagaaatattaaattaaaaggaaaa |
122 |
Q |
| |
|
|||||||||||||||||| | ||||||||| || |||||||||||||||||||| ||||||||||||| |
|
|
| T |
13787801 |
aattctctcattttatagaaaa-cgtgaacaatacttacaaattttagaaatattacattaaaaggaaaa |
13787869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13787825 - 13787862
Alignment:
| Q |
1 |
tgaacaatacttacaaattttagaaatattacattaaa |
38 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13787825 |
tgaacaatacttacaaattttagaaatattacattaaa |
13787862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 13787872 - 13787937
Alignment:
| Q |
67 |
atagggagtcgtgaacaaaacctacaaattttagaaatattaaattaaaaggaaaattataaggaa |
132 |
Q |
| |
|
||||||| |||||||||| || || |||||||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
13787872 |
atagggaatcgtgaacaatacttaaaaattttaaaaatatttcattaaaaggaaaattattaggaa |
13787937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University