View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_high_13 (Length: 426)
Name: NF14034_high_13
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 3 - 410
Target Start/End: Complemental strand, 40284870 - 40284461
Alignment:
| Q |
3 |
accatagttcgttattatcatccaatcgtaaagaggttccttggtatctggtgtgttggttttctttgttcctctaatgatgaaacttttggttttacta |
102 |
Q |
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| T |
40284870 |
accatagttcgttattatcatccaatcgtaaagaggttccttggtatctggtgtgttggttttctttgttcctctaatgatgaaatttatggttttacta |
40284771 |
T |
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| Q |
103 |
gtaattaggatg--gtcacacttctttctcaaataaatatgtaatataacaagtcattcaattccatgtgttaattaggatgatgggactggtcgtgtgc |
200 |
Q |
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| T |
40284770 |
gtaattaggatgatgtgacacttctttctcaaataaatatgtaatataacaagtcattcaattccatgtgttaattaggatgatgggactggtcgtgtgc |
40284671 |
T |
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| Q |
201 |
ttgtggttggagctcgtggtggcactgattttgtattacctactggaaactcaacatttgaaaagttggagcagacacaaataaatgaaacatcggatca |
300 |
Q |
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| T |
40284670 |
ttgtggttggagctcgtggtggcactgattttgtattacctgctggaacctcaacatttgaaaagttggagcagacacaaataaatgaaacatcggatca |
40284571 |
T |
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| Q |
301 |
tattcaacttataaaggtgggagtgttagatccaatctcttctactcacctctcctgcaaacaatataaaaaattaaagcactaaggtgtttattttgtc |
400 |
Q |
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| T |
40284570 |
tattcaacttataaaggtgggagtgttagatccaatctctactacccacctctcctgcaaacaatataaaaaattaaagcactaaggtgtttattttgtc |
40284471 |
T |
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| Q |
401 |
atgaaatcat |
410 |
Q |
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| T |
40284470 |
atgaaatcat |
40284461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 129 - 264
Target Start/End: Complemental strand, 40272217 - 40272082
Alignment:
| Q |
129 |
tcaaataaatatgtaatataacaagtcattcaattccatgtgttaattaggatgatgggactggtcgtgtgcttgtggttggagctcgtggtggcactga |
228 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| ||||| | ||||| |||| |
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| T |
40272217 |
tcaaataaatatttaatataacaagtcattcaattccatttgttaattaggatgatgggaccggtcgtgcgcttgtggttagagcttggggtggtactgg |
40272118 |
T |
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| Q |
229 |
ttttgtattacctactggaaactcaacatttgaaaa |
264 |
Q |
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| T |
40272117 |
ttttgaattacctgttggaagctcaacatttgaaaa |
40272082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 344
Target Start/End: Complemental strand, 40272014 - 40271975
Alignment:
| Q |
305 |
caacttataaaggtgggagtgttagatccaatctcttcta |
344 |
Q |
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| T |
40272014 |
caacttataaaggtgggagtgttggatccaaactcttcta |
40271975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 211
Target Start/End: Complemental strand, 40265935 - 40265899
Alignment:
| Q |
175 |
ttaggatgatgggactggtcgtgtgcttgtggttgga |
211 |
Q |
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| T |
40265935 |
ttaggatgatgggaccggtcgcgtgcttgtggttgga |
40265899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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