View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_high_2 (Length: 675)

Name: NF14034_high_2
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_high_2
NF14034_high_2
[»] scaffold0016 (2 HSPs)
scaffold0016 (1-310)||(7623-7932)
scaffold0016 (315-414)||(60352-60451)
[»] chr5 (1 HSPs)
chr5 (1-310)||(23384536-23384845)
[»] chr1 (4 HSPs)
chr1 (566-672)||(40174158-40174264)
chr1 (315-429)||(40174402-40174516)
chr1 (310-414)||(33211874-33211978)
chr1 (450-506)||(40174329-40174384)
[»] chr8 (3 HSPs)
chr8 (566-672)||(8005081-8005187)
chr8 (315-385)||(8005361-8005431)
chr8 (447-505)||(8005254-8005311)
[»] scaffold0189 (2 HSPs)
scaffold0189 (566-662)||(28076-28172)
scaffold0189 (315-506)||(28238-28425)
[»] chr2 (1 HSPs)
chr2 (315-385)||(38261610-38261680)
[»] scaffold0086 (1 HSPs)
scaffold0086 (341-412)||(28111-28182)


Alignment Details
Target: scaffold0016 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 7623 - 7932
Alignment:
Q  1 tgatgaaacttccgtgtgagttttggaggaagggttgtattagtaaattcagttcatgctacaagtccaatattagatatgtctctcaacaaaatgttga 100  Q
    |||||||||| || ||| |||||||||||||||||||| ||  |||||||||||| |||| ||| ||||||||||||||||||||||  |||||||||||    
T  7623 tgatgaaactaccttgttagttttggaggaagggttgtgttgttaaattcagttcttgcttcaattccaatattagatatgtctctcttcaaaatgttga 7722  T
Q  101 tagctttgtggnnnnnnnttgagcaaagccaaatgaactttttgtggggcgggacaacgattacatttactcaaatatttcctggaatgacgattaggtt 200  Q
    | |||||||||       ||| ||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||    
T  7723 tggctttgtggaaaaaa-ttgtgcaaatccaaatgaattttttgtggggcgggacaacgattacattttctcagatatttcctggaatgacaattaggtt 7821  T
Q  201 gttgaaacaatcaaatccatctcttgacaattgtttat-gggaaaacattatggcaattagtgtctcttttacgagtggtttataaacctgatggatcgt 299  Q
    ||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  7822 gttgaaacaatcaaatcgatctcttgacaattgtttctggggaaaacattatggcaattagtgtctcttttacgagtggtttatgaacccgatggatcgt 7921  T
Q  300 ttgattagata 310  Q
    |||||||||||    
T  7922 ttgattagata 7932  T

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Target: scaffold0016; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 60451 - 60352
Alignment:
Q  315 gatgcacaaacgcggctgagatcctccgtgtcgccgtctccgacgcggttccgactcggacgcgcgtacgaaaggggtacgattcgcgttagacgcggat 414  Q
    |||||||  ||||||| ||||||  |||||||||||||||||| ||||||||||| ||||||||||||||| | | ||||||||||||| ||||||||||    
T  60451 gatgcacggacgcggccgagatctgccgtgtcgccgtctccgatgcggttccgacacggacgcgcgtacgacacgcgtacgattcgcgtcagacgcggat 60352  T

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Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 23384845 - 23384536
Alignment:
Q  1 tgatgaaacttccgtgtgagttttggaggaagggttgtattagtaaattcagttcatgctacaagtccaatattagatatgtctctcaacaaaatgttga 100  Q
    |||||||||| || ||| |||||||||||||||||||| ||  |||||||||||| |||| ||| ||||||||||||||||||||||  |||||||||||    
T  23384845 tgatgaaactaccttgttagttttggaggaagggttgtgttgttaaattcagttcttgcttcaattccaatattagatatgtctctcttcaaaatgttga 23384746  T
Q  101 tagctttgtggnnnnnnnttgagcaaagccaaatgaactttttgtggggcgggacaacgattacatttactcaaatatttcctggaatgacgattaggtt 200  Q
    | |||||||||       ||| ||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||    
T  23384745 tggctttgtggaaaaaa-ttgtgcaaatccaaatgaattttttgtggggcgggacaacgattacattttctcagatatttcctggaatgacaattaggtt 23384647  T
Q  201 gttgaaacaatcaaatccatctcttgacaattgtttat-gggaaaacattatggcaattagtgtctcttttacgagtggtttataaacctgatggatcgt 299  Q
    ||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  23384646 gttgaaacaatcaaatcgatctcttgacaattgtttctggggaaaacattatggcaattagtgtctcttttacgagtggtttatgaacccgatggatcgt 23384547  T
Q  300 ttgattagata 310  Q
    |||||||||||    
T  23384546 ttgattagata 23384536  T

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Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 566 - 672
Target Start/End: Complemental strand, 40174264 - 40174158
Alignment:
Q  566 cttttccaccaccacacctcttccgatgccaccttctgcttccttcccttcttcttggttctaatttcatggcttttattgtaatcgccatcgccgtctc 665  Q
    ||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  40174264 cttttccaccaccacaccttttccggtgccgccgtctgcttccttcccttcttcttggttctaatttcatggcttttattgtaatcgccgtcgccgtttc 40174165  T
Q  666 tgctcct 672  Q
    || ||||    
T  40174164 tgttcct 40174158  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 315 - 429
Target Start/End: Complemental strand, 40174516 - 40174402
Alignment:
Q  315 gatgcacaaacgcggctgagatcctccgtgtcgccgtctccgacgcggttccgactcggacgcgcgtacgaaaggggtacgattcgcgttagacgcggat 414  Q
    |||||||| ||||||| ||||||| ||||||| ||||||| || ||||||||||| ||||||||||||||| |   ||||||||||||| ||||||||||    
T  40174516 gatgcacagacgcggcagagatccgccgtgtcaccgtctctgatgcggttccgacacggacgcgcgtacgacacacgtacgattcgcgtcagacgcggat 40174417  T
Q  415 attaccatatccaac 429  Q
    ||| || ||||||||    
T  40174416 attgccgtatccaac 40174402  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 310 - 414
Target Start/End: Original strand, 33211874 - 33211978
Alignment:
Q  310 actcggatgcacaaacgcggctgagatcctccgtgtcgccgtctccgacgcggttccgactcggacgcgcgtacgaaaggggtacgattcgcgttagacg 409  Q
    |||| |||||||| ||||||||||||||  |||||| ||||||||| ||||||||||||| ||||||||||||||| | | ||||||||||||| |||||    
T  33211874 actctgatgcacagacgcggctgagatctgccgtgttgccgtctccaacgcggttccgacacggacgcgcgtacgacacgcgtacgattcgcgtcagacg 33211973  T
Q  410 cggat 414  Q
     ||||    
T  33211974 tggat 33211978  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 450 - 506
Target Start/End: Complemental strand, 40174384 - 40174329
Alignment:
Q  450 ttggtcggacacggatccgacactgctctcgtgtaaacccgacgcggccaatcacag 506  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||    
T  40174384 ttggtcggacacggatccgacactgctctggtgtaaa-ccgacacggccaatcacag 40174329  T

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Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 566 - 672
Target Start/End: Complemental strand, 8005187 - 8005081
Alignment:
Q  566 cttttccaccaccacacctcttccgatgccaccttctgcttccttcccttcttcttggttctaatttcatggcttttattgtaatcgccatcgccgtctc 665  Q
    ||||||||||||||||||| || || |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  8005187 cttttccaccaccacacctttttcggtgccgccgtctgcttccttcccttcttcttggttctaatttcatggcttttattgtaatcgccgtcgccgtttc 8005088  T
Q  666 tgctcct 672  Q
    || ||||    
T  8005087 tgttcct 8005081  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 8005431 - 8005361
Alignment:
Q  315 gatgcacaaacgcggctgagatcctccgtgtcgccgtctccgacgcggttccgactcggacgcgcgtacga 385  Q
    |||||||| ||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||||||||    
T  8005431 gatgcacagacgcggctgagatccgccgtgccaccgtctccgacgcggttccgacacggacgcgcgtacga 8005361  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 505
Target Start/End: Complemental strand, 8005311 - 8005254
Alignment:
Q  447 catttggtcggacacggatccgacactgctctcgtgtaaacccgacgcggccaatcaca 505  Q
    ||||||||| ||||||||||||||||| || | ||||||| ||||||||||||||||||    
T  8005311 catttggtctgacacggatccgacactactttggtgtaaa-ccgacgcggccaatcaca 8005254  T

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Target: scaffold0189 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 566 - 662
Target Start/End: Complemental strand, 28172 - 28076
Alignment:
Q  566 cttttccaccaccacacctcttccgatgccaccttctgcttccttcccttcttcttggttctaatttcatggcttttattgtaatcgccatcgccgt 662  Q
    |||||||| |||||||||| ||||| |||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  28172 cttttccatcaccacaccttttccggtgccgccgtctgcttccttcccttcttcttggttctaatttcatggtttttattgtaatcgccgtcgccgt 28076  T

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Target: scaffold0189; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 315 - 506
Target Start/End: Complemental strand, 28425 - 28238
Alignment:
Q  315 gatgcacaaacgcggctgagatcctccgtgtcgccgtctccgacgcggttccgactcggacgcgcgtacgaaaggggtacgattcgcgttagacgcggat 414  Q
    |||||||| ||||||||||||| | ||||| ||||||||||||||||||||||||  |||||| ||||||| | | ||||||||||||| ||||||||||    
T  28425 gatgcacagacgcggctgagattcgccgtgccgccgtctccgacgcggttccgacatggacgcacgtacgacacgcgtacgattcgcgtcagacgcggat 28326  T
Q  415 attaccatatccaacnnnnnnnnnnnnnnnnncatttggtcggacacggatccgacactgctctcgtgtaaacccgacgcggccaatcacag 506  Q
    ||| || ||||||||                 ||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||    
T  28325 attgccgtatccaac---aaaaacaaaaaaaacatttggtcggacacggatccgagactgctctggtgtaaa-ccgacgcggccaatcacag 28238  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 38261680 - 38261610
Alignment:
Q  315 gatgcacaaacgcggctgagatcctccgtgtcgccgtctccgacgcggttccgactcggacgcgcgtacga 385  Q
    |||||||| ||||||||||||||| |||||||| ||| |||| |||||||||||| |||||  ||||||||    
T  38261680 gatgcacagacgcggctgagatccgccgtgtcgacgtgtccggcgcggttccgacacggacatgcgtacga 38261610  T

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Target: scaffold0086 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 412
Target Start/End: Complemental strand, 28182 - 28111
Alignment:
Q  341 cgtgtcgccgtctccgacgcggttccgactcggacgcgcgtacgaaaggggtacgattcgcgttagacgcgg 412  Q
    |||||| |||| |||| ||| |||||||||||||||||||| ||| |  |||||||||||||| ||| ||||    
T  28182 cgtgtcaccgtgtccggcgcagttccgactcggacgcgcgtgcgacactggtacgattcgcgtcagatgcgg 28111  T

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