View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_high_21 (Length: 361)
Name: NF14034_high_21
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 39692693 - 39693047
Alignment:
| Q |
1 |
ggcccacggtgaaggtcctacttggcatttcatctggttgttctgttcacctagaccgagtcaatctcttcacaactttattatcaaaatcataccacgt |
100 |
Q |
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| T |
39692693 |
ggcccatggtgaaggtcctacttggcatttcatctggttgttctgttcacctagaccgagtcaatct--tcacaactttatcatcaaaatcatacaacgt |
39692790 |
T |
|
| Q |
101 |
ggcatgtacgtgacaattgtccacactgaataa-ctagtaa-ccagtaacatttgagcgtgcacatacgcgctagtactcaagattccaagaactcatcg |
198 |
Q |
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|||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39692791 |
ggcacgtacgtgacaattgtccacactgaataaactagtaaaccagtaacatttgagcgtgcacatacgcgctagtactcaagattccaataactcatcg |
39692890 |
T |
|
| Q |
199 |
aattttcccgaatctgtgttacaagtgccacgcatgcaactgtttggtcccattcaatattgtccttttcttcttcctcacaaacaaacgaaatccaaac |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||| |
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| T |
39692891 |
aattttcccgaatctgtgttacaagtgccacgcatgcaactgtttggtcccattcaaaattgtccttttcttcttcctcgctaacaaacgaaatccaaac |
39692990 |
T |
|
| Q |
299 |
accattccagcataagcacttggcttctcgtgttattgccacgaatcattgtgttct |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39692991 |
accattccagcataagcacttggcttctcgtgttattgccacgaatcattgtgttct |
39693047 |
T |
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