View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_high_23 (Length: 357)
Name: NF14034_high_23
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 42849611 - 42849293
Alignment:
| Q |
18 |
cttctgattttgaagcacattctgaactcccttacaataatgatgataaaaattatttcttattagatgagtatatgacatatgaatatatgattaatta |
117 |
Q |
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| T |
42849611 |
cttctgattttgaagcacattctgaactcccttacaataatgatgataaaaattatttcttattagatgagtatatgacatatga--------tcaatta |
42849520 |
T |
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| Q |
118 |
tatgcatatagaagcaattattgaaaacattttgaaaagatgagtaaggatgaaagaaaacacttgaagctttaacaaataaaagcaatgattaaaggaa |
217 |
Q |
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| T |
42849519 |
tatgcatatagaagcaattattgaaaacattttgaaaagatgagtaaggatgaaagaaaacacttgaagctttaacaaataaaagcaatgattaaaggaa |
42849420 |
T |
|
| Q |
218 |
aacaaactaacatagatactgattaattattgagggccatcaattgtgaatattcgaaactataaacccaacattgtgcgaaatgcttgcaaagaaaaag |
317 |
Q |
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| T |
42849419 |
aacaaactaacatagatactgattaattattgagggccatcaattgtgaatattcgaaactataaacccaacattgtgcgaaatgcttgcaaagaaaaag |
42849320 |
T |
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| Q |
318 |
acaatgcaaagagaaatttccttattc |
344 |
Q |
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| T |
42849319 |
acaatgcaaagagaaatttccttattc |
42849293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 340
Target Start/End: Complemental strand, 42856253 - 42856159
Alignment:
| Q |
245 |
tattgagggccatcaattgtgaatattcgaaactataaacccaacattgtgcgaaatgcttgcaaagaaaaagacaatgcaaagagaaatttcctt |
340 |
Q |
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| T |
42856253 |
tattgagagccattaatggtgaatattcgaaacgataaacccgata-tgtgcgaaatgcttgcaacagaaaagatagtgcaaagaaaaacttcctt |
42856159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 346
Target Start/End: Complemental strand, 42857856 - 42857756
Alignment:
| Q |
245 |
tattgagggccatcaattgtgaatattcgaaactataaacccaacattgtgcgaaatgcttgcaaagaaaaagacaatgcaaagagaaatttccttattc |
344 |
Q |
| |
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||||||| ||||||||| |||||||||||||| |||||||||| | | || |||||| |||||| |||||| | |||||||| ||| |||||||||| |
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| T |
42857856 |
tattgagagccatcaatggtgaatattcgaaaagataaacccaata-tatgtgaaatgtttgcaatagaaaagatactgcaaagaaaaacttccttattc |
42857758 |
T |
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| Q |
345 |
at |
346 |
Q |
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|| |
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| T |
42857757 |
at |
42857756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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