View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_high_28 (Length: 337)

Name: NF14034_high_28
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_high_28
NF14034_high_28
[»] scaffold0386 (1 HSPs)
scaffold0386 (16-321)||(826-1131)
[»] chr4 (1 HSPs)
chr4 (16-321)||(33878822-33879127)
[»] chr7 (1 HSPs)
chr7 (17-321)||(29735253-29735563)
[»] chr5 (3 HSPs)
chr5 (17-321)||(13869443-13869740)
chr5 (122-321)||(27641144-27641343)
chr5 (17-69)||(27641077-27641129)
[»] chr3 (1 HSPs)
chr3 (55-321)||(49850969-49851241)
[»] chr8 (3 HSPs)
chr8 (17-89)||(38460630-38460702)
chr8 (136-185)||(38460700-38460749)
chr8 (273-321)||(38460745-38460793)


Alignment Details
Target: scaffold0386 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 321
Target Start/End: Complemental strand, 1131 - 826
Alignment:
Q  16 actcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1131 actcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtc 1032  T
Q  116 aaattatattaaaatagttagttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1031 aaattatattaaaatagttagttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggc 932  T
Q  216 tgaatgnnnnnnnaaggttgatgaacatgttcctagattttcacaaacactattagagaaatataaaacaagaacatagattcagtttatgagcgattca 315  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  931 tgaatgtttttttaaggttgatgaacatgttcctagattttcacaaacactattaaagaaatataaaacaagaacatagattcagtttatgagcgattca 832  T
Q  316 aaataa 321  Q
    ||||||    
T  831 aaataa 826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 33878822 - 33879127
Alignment:
Q  16 actcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtc 115  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33878822 actcattgcaacaccataattaacggatccaaatcatgcggagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtc 33878921  T
Q  116 aaattatattaaaatagttagttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33878922 aaattatattaaaatagttagttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggc 33879021  T
Q  216 tgaatgnnnnnnnaaggttgatgaacatgttcctagattttcacaaacactattagagaaatataaaacaagaacatagattcagtttatgagcgattca 315  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33879022 tgaatgtttttttaaggttgatgaacatgttcctagattttcacaaacactattaaagaaatataaaacaagaacatagattcagtttatgagcgattca 33879121  T
Q  316 aaataa 321  Q
    ||||||    
T  33879122 aaataa 33879127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 29735563 - 29735253
Alignment:
Q  17 ctcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtca 116  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  29735563 ctcattgcaacaccataattaacggatccaaatcatgtagagattgtttctaaaccatactgtattgggtgttattgcaatccaatcgagcaatgggtta 29735464  T
Q  117 aattatattaaaatagttagttttaataacttt------gcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatg 210  Q
    |||| ||||||||||||||||||||||||||||      ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||    
T  29735463 aattctattaaaatagttagttttaataactttttgtatgcatttggaaattcagatctcttaaaaggttgaaattttctcttccatgagttgagatatg 29735364  T
Q  211 gtggctgaatgnnnnnnnaaggttgatgaacatgttcctagattttcacaaacactattagagaaatataaaacaagaacatagattcagtttatgagcg 310  Q
    |||||||||||       |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29735363 gtggctgaatgtttttttaaggttgatgaacatgttcctagattttcataaacactattagagaaatattaaacaagaacatagattcagtttatgagcg 29735264  T
Q  311 attcaaaataa 321  Q
    |||||||||||    
T  29735263 attcaaaataa 29735253  T

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Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 13869443 - 13869740
Alignment:
Q  17 ctcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgttattgcaatccaatcgagcaatgggtca 116  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  13869443 ctcattgtaacaccataattaacggatccaaatcatgtagagattgtttctaaatcatgctgtattgggtgttattgcaatccaatcgagcaatgggtca 13869542  T
Q  117 aattatattaaaatagttagttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggct 216  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13869543 aattctattaaaatagttagttttaataactttgcatttggaaattcagatctcttgaaaggttgaaattttctcttccatgagttgagatatggtggct 13869642  T
Q  217 gaatgnnnnnnnaaggttgatgaacatgttcctagattttcacaaacactattagagaaatataaaacaagaacatagattcagtttatgagcgattcaa 316  Q
    |||||       ||||||       ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13869643 gaatgtttttttaaggtt-------atgttcctagattttcagaaacactaatagagaaatataaaacaagaacatagattcagtttatgagcgattcaa 13869735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 122 - 321
Target Start/End: Original strand, 27641144 - 27641343
Alignment:
Q  122 tattaaaatagttagttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatg 221  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||    
T  27641144 tattaaaatagttagttttaataactttgcatttggaaattcagatctcttgaaaggttgaaattttctcttccatgagttgacatatggtgggtgaatg 27641243  T
Q  222 nnnnnnnaaggttgatgaacatgttcctagattttcacaaacactattagagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataa 321  Q
           |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27641244 tttttttaaggttgatgaacatgttcctagattttcagaaacactaatagagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataa 27641343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 27641077 - 27641129
Alignment:
Q  17 ctcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaa 69  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  27641077 ctcattgtaacaccataattaacggatccaaatcatgtagagattgtttctaa 27641129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 55 - 321
Target Start/End: Complemental strand, 49851241 - 49850969
Alignment:
Q  55 agagattgtttctaaaccatgctgtattgggtgttatt---gcaatccaatcgagcaatgggtcaaattatattaaaatagttagttttaataactttgc 151  Q
    |||||||||||||||| |||||||||||||||||||||   |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49851241 agagattgtttctaaatcatgctgtattgggtgttattattgcaatccaattgagcaatgggtcaaattctattaaaatagttagttttaataactttgc 49851142  T
Q  152 atttggaaattcaaatctcttgaaatgttgaaattttctcttccatgagttgagatatggtggctgaatgnnnnnnnaaggttga---tgaacatgttcc 248  Q
    ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |||| |||||       ||||||||   ||||||||||||    
T  49851141 atttggaaattcagatctcttaaaaggttgaaattttctcttccatgagttgagatatgatggccgaatgtttttttaaggttgatattgaacatgttcc 49851042  T
Q  249 tagattttcacaaacactattagagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataa 321  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49851041 tagattttcagaaatactattagagaaatataaaacaagaacatagattcagtttatgagcgattcaaaataa 49850969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 38460630 - 38460702
Alignment:
Q  17 ctcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgctgtattgggtgtt 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38460630 ctcattgcaacaccataattaacggatccaaatcatgcagagattgtttctaaaccatgttgtattgggtgtt 38460702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 38460700 - 38460749
Alignment:
Q  136 gttttaataactttgcatttggaaattcaaatctcttgaaatgttgaaat 185  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38460700 gttttaataactttgcatttggaaattcaaatctcttgaaaggttgaaat 38460749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 38460745 - 38460793
Alignment:
Q  273 gaaatataaaacaagaacatagattcagtttatgagcgattcaaaataa 321  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38460745 gaaatataaaacaagaacatagatttagtttatgagcgattcaaaataa 38460793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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