View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_high_42 (Length: 289)

Name: NF14034_high_42
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_high_42
NF14034_high_42
[»] chr3 (3 HSPs)
chr3 (160-256)||(4402939-4403035)
chr3 (32-85)||(31194966-31195019)
chr3 (32-85)||(52773294-52773347)
[»] chr1 (1 HSPs)
chr1 (32-217)||(6096406-6096591)
[»] chr7 (1 HSPs)
chr7 (32-85)||(16256784-16256837)
[»] chr6 (1 HSPs)
chr6 (32-84)||(26133707-26133759)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 160 - 256
Target Start/End: Original strand, 4402939 - 4403035
Alignment:
Q  160 tcatcagttattcatttctagaaatgttattttctatgagctgcattttccttttcataatttttcgtcatcttctacatcaagttcacctttacct 256  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||    
T  4402939 tcatcagttattcatttctagaaataatattttctatgagctgcattttccttttcatgtttcttcgtcatcttctacatcaagttcacctttacct 4403035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 31195019 - 31194966
Alignment:
Q  32 tttggttgtctttgctatgcatctaccttacatattcataggacaaagtttgat 85  Q
    |||||||| ||||| ||||| ||||||||||||| |||||| ||||| ||||||    
T  31195019 tttggttgcctttgttatgcctctaccttacataatcatagaacaaaatttgat 31194966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 52773294 - 52773347
Alignment:
Q  32 tttggttgtctttgctatgcatctaccttacatattcataggacaaagtttgat 85  Q
    |||||||| ||||| ||||| ||||||||||||| |||||| ||||| ||||||    
T  52773294 tttggttgcctttgttatgcctctaccttacataatcatagaacaaaatttgat 52773347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 217
Target Start/End: Original strand, 6096406 - 6096591
Alignment:
Q  32 tttggttgtctttgctatgcatctaccttacatattcataggacaaagtttgatcatagggctagaaaggctgtttttcttggttacaaagagggagtca 131  Q
    ||||||||| | ||||||||||| || ||||||  |||| | || || |||| |||||| ||||||||  | |||||||||||||| |||||||| || |    
T  6096406 tttggttgtttgtgctatgcatccactttacatgctcatcgtactaaatttggtcatagagctagaaaaacagtttttcttggttataaagagggtgtaa 6096505  T
Q  132 aaggatatattctctatgagttactttctcatcagttattcatttctagaaatgttattttctatgagctgcattttccttttcat 217  Q
    | || |||||| | ||||| || | |||||||||  |  | |||||||| ||||||||||||| ||||   |||||||||||||||    
T  6096506 agggctatattttgtatgatttgcattctcatcaaatgattatttctaggaatgttattttctttgaggatcattttccttttcat 6096591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 16256784 - 16256837
Alignment:
Q  32 tttggttgtctttgctatgcatctaccttacatattcataggacaaagtttgat 85  Q
    |||||||||||||| ||||| ||||||||||||| |||||| ||||| ||||||    
T  16256784 tttggttgtctttgttatgcctctaccttacataatcatagaacaaaatttgat 16256837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 26133707 - 26133759
Alignment:
Q  32 tttggttgtctttgctatgcatctaccttacatattcataggacaaagtttga 84  Q
    |||||||||||||| ||||| ||||||||||||| |||||| ||||| |||||    
T  26133707 tttggttgtctttgttatgcctctaccttacataatcatagaacaaaatttga 26133759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University