View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_high_47 (Length: 268)

Name: NF14034_high_47
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_high_47
NF14034_high_47
[»] chr2 (11 HSPs)
chr2 (16-165)||(2474241-2474390)
chr2 (18-165)||(2469972-2470119)
chr2 (18-127)||(2458023-2458132)
chr2 (16-132)||(3063281-3063400)
chr2 (16-143)||(2462597-2462727)
chr2 (16-120)||(2466645-2466752)
chr2 (43-112)||(2471021-2471090)
chr2 (162-210)||(2474456-2474504)
chr2 (44-103)||(2478858-2478917)
chr2 (44-103)||(2483362-2483421)
chr2 (44-103)||(2486543-2486602)
[»] chr4 (1 HSPs)
chr4 (16-132)||(18015920-18016039)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 2474241 - 2474390
Alignment:
Q  16 atactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccaccagg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  2474241 atactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccccctgg 2474340  T
Q  116 caactatattggcgaaagaccatactaatttattcatatttgtttgtatt 165  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2474341 caactatattggcgaaagaccatactaattgattcatatttgtttgtatt 2474390  T

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Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 2469972 - 2470119
Alignment:
Q  18 actcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccaccaggca 117  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  2469972 actcaggtggtttggagaaacacacaacggattggatgtgccaaagtgaaatgtaataacggaggaacattcattacttgcaattacgacccaccaggca 2470071  T
Q  118 actatattggcgaaagaccatactaatttattcatatttgtttgtatt 165  Q
    |||||||||||||||||||||||||| | |||||||||| ||||||||    
T  2470072 actatattggcgaaagaccatactaagtgattcatatttatttgtatt 2470119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 2458023 - 2458132
Alignment:
Q  18 actcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccaccaggca 117  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||| | |||| |||||||||| |||||||||| |||||||||||| ||||||||||    
T  2458023 actcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccaccaggca 2458122  T
Q  118 actatattgg 127  Q
    ||||| ||||    
T  2458123 actatgttgg 2458132  T

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Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 3063400 - 3063281
Alignment:
Q  16 atactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatg---gaggaacattcattacttgcaattacgacccacc 112  Q
    |||||||||| |||||||||||| || ||||| |||||||||||||||||| ||||||||||    |||||||||||||||| |||||||||||||||||    
T  3063400 atactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc 3063301  T
Q  113 aggcaactatattggcgaaa 132  Q
    |||||||||| |||| ||||    
T  3063300 aggcaactatgttggtgaaa 3063281  T

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Target: chr2; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 2462597 - 2462727
Alignment:
Q  16 atactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatg---gaggaacattcattacttgcaattacgacccacc 112  Q
    |||| ||||| |||||||||||| || ||||| |||||||||||||||||| ||||||||||    |||||||||||||||| |||||||||||||||||    
T  2462597 atacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc 2462696  T
Q  113 aggcaactatattggcgaaagaccatactaa 143  Q
    |||||||||| |||| ||||  |||||||||    
T  2462697 aggcaactatgttggtgaaaagccatactaa 2462727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 2466645 - 2466752
Alignment:
Q  16 atactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatg---gaggaacattcattacttgcaattacgacccacc 112  Q
    |||| ||||| |||||||||||| || ||||| |||||||||||||||||| ||||||||||    |||||||||||||||| |||||||||||||||||    
T  2466645 atacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc 2466744  T
Q  113 aggcaact 120  Q
    ||||||||    
T  2466745 aggcaact 2466752  T

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Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 2471021 - 2471090
Alignment:
Q  43 aacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccacc 112  Q
    ||||| ||||||||| |||||||| ||||||||||||||| |||||||||||||||||||| ||||||||    
T  2471021 aacgtgttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacc 2471090  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 2474456 - 2474504
Alignment:
Q  162 tatttttcccctactcatatataatttgtggtatttaatttaaagtgaa 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2474456 tatttttcccctactcatatataatttgtggtatttaatttaaagtgaa 2474504  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 2478858 - 2478917
Alignment:
Q  44 acgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaatta 103  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||||||  ||||||| |||||    
T  2478858 acgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaatta 2478917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 2483362 - 2483421
Alignment:
Q  44 acgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaatta 103  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||||||  ||||||| |||||    
T  2483362 acgtcttggatgtggcaaagtgaaatgtaataatggtggaacatttgttacttgtaatta 2483421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 2486543 - 2486602
Alignment:
Q  44 acgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaatta 103  Q
    |||| ||||||||| ||||||||||||||||||||| ||  ||||  |||||||||||||    
T  2486543 acgtgttggatgtggcaaagtgaaatgtgataatggtggctcatttgttacttgcaatta 2486602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 18015920 - 18016039
Alignment:
Q  16 atactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatg---gaggaacattcattacttgcaattacgacccacc 112  Q
    |||||||||| |||||||||||| || ||||| |||||||||||||||||| ||||||||||    |||||||||||||||| |||||||||||||||||    
T  18015920 atactcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc 18016019  T
Q  113 aggcaactatattggcgaaa 132  Q
    |||||||||| |||| ||||    
T  18016020 aggcaactatgttggtgaaa 18016039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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