View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_high_48 (Length: 265)

Name: NF14034_high_48
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_high_48
NF14034_high_48
[»] chr6 (3 HSPs)
chr6 (77-173)||(29643215-29643310)
chr6 (20-85)||(29643498-29643563)
chr6 (189-253)||(24587464-24587528)
[»] chr1 (19 HSPs)
chr1 (189-253)||(17127635-17127699)
chr1 (189-253)||(37155049-37155113)
chr1 (189-248)||(17127567-17127626)
chr1 (189-253)||(9157313-9157377)
chr1 (189-253)||(21630045-21630109)
chr1 (189-253)||(48993988-48994052)
chr1 (194-253)||(28395645-28395704)
chr1 (189-248)||(48993920-48993979)
chr1 (189-253)||(29179668-29179732)
chr1 (213-260)||(46334011-46334057)
chr1 (214-253)||(48605018-48605057)
chr1 (194-248)||(29179605-29179659)
chr1 (183-253)||(44706855-44706925)
chr1 (189-253)||(1091615-1091679)
chr1 (189-253)||(4608999-4609063)
chr1 (189-253)||(5995372-5995436)
chr1 (171-211)||(28928875-28928915)
chr1 (205-253)||(32540819-32540867)
chr1 (189-253)||(36290478-36290542)
[»] chr3 (9 HSPs)
chr3 (177-248)||(30734393-30734464)
chr3 (183-253)||(43139780-43139850)
chr3 (189-253)||(33689179-33689243)
chr3 (213-253)||(50524729-50524769)
chr3 (189-254)||(41752967-41753032)
chr3 (185-241)||(30580755-30580811)
chr3 (189-253)||(30734473-30734537)
chr3 (189-253)||(47492118-47492182)
chr3 (185-253)||(50549974-50550042)
[»] scaffold0016 (1 HSPs)
scaffold0016 (189-248)||(49706-49765)
[»] chr4 (14 HSPs)
chr4 (183-248)||(47661918-47661983)
chr4 (195-248)||(51265521-51265574)
chr4 (189-248)||(53954686-53954745)
chr4 (194-248)||(23444277-23444331)
chr4 (183-253)||(23444340-23444410)
chr4 (189-253)||(26186085-26186149)
chr4 (189-253)||(51265448-51265512)
chr4 (189-248)||(35682242-35682301)
chr4 (189-248)||(42375086-42375145)
chr4 (194-253)||(44379938-44379997)
chr4 (185-223)||(2325081-2325119)
chr4 (189-251)||(3862619-3862681)
chr4 (189-251)||(3871376-3871438)
chr4 (189-253)||(6271705-6271769)
[»] chr8 (11 HSPs)
chr8 (189-253)||(5033164-5033228)
chr8 (189-253)||(33841662-33841726)
chr8 (189-248)||(5033237-5033296)
chr8 (195-248)||(35440978-35441031)
chr8 (189-253)||(35441040-35441104)
chr8 (177-248)||(6296681-6296752)
chr8 (189-248)||(33841594-33841653)
chr8 (194-248)||(10086833-10086887)
chr8 (189-253)||(2581828-2581892)
chr8 (189-253)||(8796425-8796489)
chr8 (189-253)||(43844540-43844604)
[»] scaffold0180 (1 HSPs)
scaffold0180 (177-248)||(19113-19184)
[»] chr7 (4 HSPs)
chr7 (189-248)||(38975881-38975940)
chr7 (189-253)||(11016872-11016936)
chr7 (189-253)||(41018299-41018363)
chr7 (189-248)||(11016945-11017004)
[»] chr5 (9 HSPs)
chr5 (189-248)||(16971220-16971279)
chr5 (185-254)||(291096-291165)
chr5 (195-248)||(3899915-3899968)
chr5 (189-248)||(291173-291232)
chr5 (189-248)||(2953266-2953325)
chr5 (183-242)||(30117825-30117884)
chr5 (189-243)||(13312267-13312321)
chr5 (189-243)||(22083095-22083149)
chr5 (189-250)||(1638460-1638521)
[»] chr2 (4 HSPs)
chr2 (172-245)||(32545867-32545940)
chr2 (189-248)||(16514500-16514559)
chr2 (189-248)||(38933663-38933722)
chr2 (205-253)||(6721970-6722018)
[»] scaffold0586 (1 HSPs)
scaffold0586 (201-253)||(7118-7170)
[»] scaffold0161 (1 HSPs)
scaffold0161 (189-253)||(27291-27355)


Alignment Details
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 29643310 - 29643215
Alignment:
Q  77 atttccatatgaagcaagtatttttcgtcaacaaaattgtgaacgaaatataaatagtatctgtgtcggctatgacacgtgaaaattgagtttgaat 173  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||    
T  29643310 atttccatatgaagcaagtatttt-cgtcatcaaaattgtgaacgaaatataaatagtatttgtgtcggctatggctcgtgaaaattgagtttgaat 29643215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 29643563 - 29643498
Alignment:
Q  20 aattcttttagtatcttctctttgtaacttttctcaagtgtatcagtgttttcaaatatttccata 85  Q
    |||| ||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||||    
T  29643563 aattattttagtattttctctttgtaacttttctcaagtctattagtgtttccaaatatttccata 29643498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 24587464 - 24587528
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| |||||||||  ||||||||  |||| | |||||||||||||||||||||||    
T  24587464 gtgacatagagttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttct 24587528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 17127699 - 17127635
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    ||||||||||||| |||||||||  |||||||||||||| | |||||||||||||||||||||||    
T  17127699 gtgatatagagttaggtgacattagtgacattgaccaatcaaaatgtcacaatgcttgtgtttct 17127635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 37155049 - 37155113
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| ||||||||||||||||||  |||||||| ||||| | |||||||||||||||||||||||    
T  37155049 gtgacatagagtttggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttct 37155113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 17127567 - 17127626
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    ||||||||||||| |||||||||  |||||||||||||| | ||||||||||||||||||    
T  17127567 gtgatatagagttaggtgacattagtgacattgaccaatcacaatgtcacaatgcttgtg 17127626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 9157313 - 9157377
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| |||||||||  | |||||||||||| | |||||||||||||||||||||||    
T  9157313 gtgacatagagttgggtgacattggtaacattgaccaatcacaatgtcacaatgcttgtgtttct 9157377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 21630045 - 21630109
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| ||| |||| |||||||||  |||||||||||||| | |||||||||||||||||||||||    
T  21630045 gtgacataaagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttct 21630109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 48994052 - 48993988
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| |||||||||  |||||||||||||| | |||| ||||||||||||||||||    
T  48994052 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttct 48993988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 28395645 - 28395704
Alignment:
Q  194 atagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    ||||||||  ||||||||  |||||||||||||| | |||||||||||||||||||||||    
T  28395645 atagagttgagtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttct 28395704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 48993920 - 48993979
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    |||| |||||||| |||||||||  |||||||||||||| | ||||||||||||||||||    
T  48993920 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 48993979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 29179732 - 29179668
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| |||||||||  |||||||| ||||| | |||| ||||||||||||||||||    
T  29179732 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttct 29179668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 46334057 - 46334011
Alignment:
Q  213 atgacattgaccaattataatgtcacaatgcttgtgtttcttctctct 260  Q
    ||||||||||||||| | ||||||||||||||||||||| ||||||||    
T  46334057 atgacattgaccaatcacaatgtcacaatgcttgtgttt-ttctctct 46334011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 253
Target Start/End: Complemental strand, 48605057 - 48605018
Alignment:
Q  214 tgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  48605057 tgacattggccaattataatgtcacaatgcttgcgtttct 48605018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 29179605 - 29179659
Alignment:
Q  194 atagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    |||||||| |||||||||  ||||| |||||||| | ||||||||||||||||||    
T  29179605 atagagttgggtgacattggtgacactgaccaatcacaatgtcacaatgcttgtg 29179659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 44706925 - 44706855
Alignment:
Q  183 atttgagtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    ||||| |||| |||||||| |||||||||  |||||||| ||||| | |||| | ||||||||||||||||    
T  44706925 atttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccgcaatgcttgtgtttct 44706855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 1091679 - 1091615
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| ||||| |||  |||| ||||||||| | |||||||||||| ||||||||||    
T  1091679 gtgacatagagttgggtgatattggtgactttgaccaatcacaatgtcacaatgtttgtgtttct 1091615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 4608999 - 4609063
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    ||||||| ||||| ||||||||   ||||||||||| || | |||||||||||| ||||||||||    
T  4608999 gtgatatggagttgggtgacatcggtgacattgacccatcacaatgtcacaatgtttgtgtttct 4609063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 5995372 - 5995436
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||||| |||||||  | |||||| ||||| | |||| ||||||||||||||||||    
T  5995372 gtgacatagagtttgatgacattggtaacattggccaatcacaatgccacaatgcttgtgtttct 5995436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Complemental strand, 28928915 - 28928875
Alignment:
Q  171 aataccgatagaatttgagtgatatagagtttggtgacatt 211  Q
    ||||| ||||| | |||||||||||||||||||||||||||    
T  28928915 aatacggatagcacttgagtgatatagagtttggtgacatt 28928875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 32540867 - 32540819
Alignment:
Q  205 tgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||||||  |||||||||||||| | ||||| |||||||||||||||||    
T  32540867 tgacattggtgacattgaccaatcacaatgttacaatgcttgtgtttct 32540819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 36290542 - 36290478
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| |||||||||  || ||||||||||| | |||||||||||  ||||||||||    
T  36290542 gtgacatagagttgggtgacattggtggcattgaccaatcacaatgtcacaatatttgtgtttct 36290478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 30734393 - 30734464
Alignment:
Q  177 gatagaatttgagtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    ||||||| ||| |||| |||||||||||||||||| |||||||||||| || | ||||||||||||||||||    
T  30734393 gatagaacttgtgtgacatagagtttggtgacattgatgacattgaccgatcacaatgtcacaatgcttgtg 30734464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 43139850 - 43139780
Alignment:
Q  183 atttgagtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    ||||| |||| |||||||| |||||||||  |||||||| ||||| | |||| ||||||||||||||||||    
T  43139850 atttgggtgacatagagttgggtgacattggtgacattggccaataacaatgccacaatgcttgtgtttct 43139780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 33689179 - 33689243
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| ||||||||| |||| ||||  |||| | |||||||||||||||||||||||    
T  33689179 gtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtgtttct 33689243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 50524729 - 50524769
Alignment:
Q  213 atgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  50524729 atgacattgaccaatcataatgtcacaatgtttgtgtttct 50524769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 41752967 - 41753032
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttctt 254  Q
    |||| |||||||| |||||||||  |||||||| ||||| | |||| ||||||| |||||||||||    
T  41752967 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctt 41753032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 30580755 - 30580811
Alignment:
Q  185 ttgagtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaat 241  Q
    |||||||| ||||| || |||||||||  ||| |||||||||| |||||||||||||    
T  30580755 ttgagtgacatagaattgggtgacattggtgatattgaccaatcataatgtcacaat 30580811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 30734537 - 30734473
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| |||||||||  |||||||| ||||| | ||||||| ||| |||||||||||    
T  30734537 gtgacatagagttaggtgacattggtgacattggccaatcacaatgtcataatacttgtgtttct 30734473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 47492182 - 47492118
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| |||||||||  | | |||| ||||| | |||||||||||||||||||||||    
T  47492182 gtgacatagagttgggtgacattggtcatattggccaatcacaatgtcacaatgcttgtgtttct 47492118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 50549974 - 50550042
Alignment:
Q  185 ttgagtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||||||||||| || | ||||| |||  |||||||||||||| | ||| | |||||||||||||||||    
T  50549974 ttgagtgatataaagctgggtgatattggtgacattgaccaatcacaatattacaatgcttgtgtttct 50550042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 49706 - 49765
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    |||| |||||||| ||||||||| ||||||||||||||| | ||||||||||||||||||    
T  49706 gtgacatagagttgggtgacattgatgacattgaccaatcacaatgtcacaatgcttgtg 49765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 47661983 - 47661918
Alignment:
Q  183 atttgagtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    ||||| |||| |||||||| |||||||||  |||||||||||||| | ||||||||||||||||||    
T  47661983 atttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 47661918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 51265574 - 51265521
Alignment:
Q  195 tagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    ||||||| |||||||||  |||||||||||||| ||||||||||||||||||||    
T  51265574 tagagttgggtgacattggtgacattgaccaatcataatgtcacaatgcttgtg 51265521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 53954745 - 53954686
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    |||| |||||||| |||||||||  |||||||| ||||||| ||||||||||||||||||    
T  53954745 gtgacatagagttgggtgacattggtgacattgtccaattacaatgtcacaatgcttgtg 53954686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 23444277 - 23444331
Alignment:
Q  194 atagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    |||||||| |||||||||  |||||||||||||| | ||||||||||||||||||    
T  23444277 atagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 23444331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 253
Target Start/End: Complemental strand, 23444410 - 23444340
Alignment:
Q  183 atttgagtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    ||||| |||| |||||||| |||||||||  |||||||| ||||| | |||| ||||||||||||||||||    
T  23444410 atttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttct 23444340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 26186149 - 26186085
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| ||| ||||| ||||||||| ||||| | ||| |||||||||||||||||||    
T  26186149 gtgacatagagttgggtaacattgatgacattggccaatcacaatttcacaatgcttgtgtttct 26186085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 51265448 - 51265512
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| |||||||||  |||||||| ||||| | |||| ||||||||||||||||||    
T  51265448 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttct 51265512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 35682301 - 35682242
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    |||| |||||||| |||||||||  ||||||||||| || | ||||||||||||||||||    
T  35682301 gtgacatagagttaggtgacattggtgacattgaccgatcacaatgtcacaatgcttgtg 35682242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 42375145 - 42375086
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    |||| |||||||| |||||||||  ||||||||| |||| | ||||||||||||||||||    
T  42375145 gtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgcttgtg 42375086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 44379938 - 44379997
Alignment:
Q  194 atagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    ||||||||  ||||||||   ||||||| |||||||||||||||||||||||| ||||||    
T  44379938 atagagttgagtgacattggcgacattggccaattataatgtcacaatgcttgcgtttct 44379997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 2325119 - 2325081
Alignment:
Q  185 ttgagtgatatagagtttggtgacatttatgacattgac 223  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  2325119 ttgagtgacatagagtttggtgacattgatgacattgac 2325081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 3862681 - 3862619
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgttt 251  Q
    |||| |||||||| |||||||||  |||||||| ||||| | |||| ||||||||||||||||    
T  3862681 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgttt 3862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 3871438 - 3871376
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgttt 251  Q
    |||| |||||||| |||||||||  |||||||| ||||| | |||| ||||||||||||||||    
T  3871438 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgttt 3871376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 6271705 - 6271769
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| ||||| |||  |||||||| ||||| | |||| ||||||||||||||||||    
T  6271705 gtgacatagagttgggtgatattggtgacattggccaatcacaatgccacaatgcttgtgtttct 6271769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 5033164 - 5033228
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| |||||||||  |||||||||||||| | |||| ||||||||||||||||||    
T  5033164 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttct 5033228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 33841726 - 33841662
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| |||||||||  |||||||||||||| | |||| ||||||||||||||||||    
T  33841726 gtgacatagagttgggtgacattggtgacattgaccaatcagaatgccacaatgcttgtgtttct 33841662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 5033296 - 5033237
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    |||| |||||||| |||||||||  |||||||||||||| | ||||||||||||||||||    
T  5033296 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 5033237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 35440978 - 35441031
Alignment:
Q  195 tagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    ||||||| |||||||||  |||||||||||||| | ||||||||||||||||||    
T  35440978 tagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 35441031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 35441104 - 35441040
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| |||||||||  |||||||| ||||| | |||| ||||||||||||||||||    
T  35441104 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttct 35441040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 6296752 - 6296681
Alignment:
Q  177 gatagaatttgagtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    ||||| ||||| ||||||||||||| | |||||||  |||||||   |||||||||||||||||| ||||||    
T  6296752 gatagtatttgggtgatatagagttggatgacattagtgacattagtcaattataatgtcacaatacttgtg 6296681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 33841594 - 33841653
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    |||| |||||||| |||||||||  |||||||||||||| | | ||||||||||||||||    
T  33841594 gtgacatagagttgggtgacattggtgacattgaccaatcacattgtcacaatgcttgtg 33841653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 10086887 - 10086833
Alignment:
Q  194 atagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    |||||||| |||||||||  |||||||||||||| | |||||||||||| |||||    
T  10086887 atagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtg 10086833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 2581828 - 2581892
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| ||||| || |||||||||  |||||||| ||||| | |||| ||||||||||||||||||    
T  2581828 gtgacatagaattgggtgacattgttgacattggccaatcacaatgccacaatgcttgtgtttct 2581892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 8796425 - 8796489
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| ||||| |||| ||| ||||  |||| | |||||||||||||||||||||||    
T  8796425 gtgacatagagttaggtgatatttgtgatattggtcaatcacaatgtcacaatgcttgtgtttct 8796489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 43844604 - 43844540
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| | |||||||  ||| ||||| |||| | |||||||||||||||||||||||    
T  43844604 gtgacatagagttggatgacattggtgatattgatcaatcacaatgtcacaatgcttgtgtttct 43844540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 19113 - 19184
Alignment:
Q  177 gatagaatttgagtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    ||||| ||||| |||| |||||||| ||||||||| |||| ||||| |||| | ||||||||||||||||||    
T  19113 gatagcatttgtgtgacatagagttgggtgacattgatgatattgatcaatcacaatgtcacaatgcttgtg 19184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 38975940 - 38975881
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    |||| |||||||| |||||||||  ||||||||| ||||||||||| |||||||||||||    
T  38975940 gtgacatagagttaggtgacattggtgacattgatcaattataatgccacaatgcttgtg 38975881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 11016872 - 11016936
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| |||||||||  |||||||| ||||| | |||| ||||||||||||||||||    
T  11016872 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttct 11016936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 41018363 - 41018299
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||| |||||||| |||||||||  |||||||||||||| | |||| |||||||||| |||||||    
T  41018363 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttatgtttct 41018299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 11017004 - 11016945
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    |||| |||||||| |||||||||  |||||||||||||| | |||||||||||| |||||    
T  11017004 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgtttgtg 11016945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 16971279 - 16971220
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    |||| |||||||| |||||||||  |||||||||||||| | ||||||||||||||||||    
T  16971279 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 16971220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 291096 - 291165
Alignment:
Q  185 ttgagtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttctt 254  Q
    |||||||| |||||||| |||||||||  |||||||| ||||| | |||| |||||||||||| ||||||    
T  291096 ttgagtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtatttctt 291165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 3899968 - 3899915
Alignment:
Q  195 tagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    ||||||| |||||||||  |||||||||||||| | ||||||||||||||||||    
T  3899968 tagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 3899915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 291232 - 291173
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    ||||||||||||| |||||||||  ||||||||| |||| | |||||||||||| |||||    
T  291232 gtgatatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgtttgtg 291173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 2953325 - 2953266
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    |||| |||||||| |||||||||  |||||||| ||||| | ||||||||||||||||||    
T  2953325 gtgacatagagttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgtg 2953266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 30117825 - 30117884
Alignment:
Q  183 atttgagtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatg 242  Q
    ||||| ||||||||||||| |||||||||  ||| |||||||||| | ||||||||||||    
T  30117825 atttgggtgatatagagttgggtgacattggtgatattgaccaatcacaatgtcacaatg 30117884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 13312267 - 13312321
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgc 243  Q
    |||| |||||||| ||||||||| |||||||||| |||| | |||||||||||||    
T  13312267 gtgacatagagttaggtgacattgatgacattgatcaatcacaatgtcacaatgc 13312321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 22083149 - 22083095
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgc 243  Q
    |||| |||||||||||||||||| |||| ||||  |||||||||| |||||||||    
T  22083149 gtgacatagagtttggtgacattaatgatattggtcaattataatttcacaatgc 22083095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 1638460 - 1638521
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtt 250  Q
    ||||||||||||| ||||| |||| ||| |||| ||||| | |||||||||||| |||||||    
T  1638460 gtgatatagagttgggtgatatttgtgatattggccaatcacaatgtcacaatgtttgtgtt 1638521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 32545940 - 32545867
Alignment:
Q  172 ataccgatagaatttgagtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgctt 245  Q
    |||| ||||| | ||| |||| ||||||||| ||||||||  |||||||| ||||| |||||||||||||||||    
T  32545940 atacggatagcacttgggtgacatagagtttagtgacattggtgacattggccaatcataatgtcacaatgctt 32545867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 16514559 - 16514500
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    |||| |||||||| ||||| |||  |||||||||||||| | ||||||||||||||||||    
T  16514559 gtgacatagagttgggtgagattggtgacattgaccaatcacaatgtcacaatgcttgtg 16514500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 38933722 - 38933663
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtg 248  Q
    |||| |||||||| |||||||||  |||| ||| ||||| ||||||||||||||||||||    
T  38933722 gtgacatagagttgggtgacattggtgacgttggccaatcataatgtcacaatgcttgtg 38933663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 6721970 - 6722018
Alignment:
Q  205 tgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||||||  |||||||||||||| | ||| |||||||||||||||||||    
T  6721970 tgacattggtgacattgaccaatcacaatatcacaatgcttgtgtttct 6722018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 7170 - 7118
Alignment:
Q  201 ttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    |||||||||||  |||||||| ||||| | |||||||||||||||||||||||    
T  7170 ttggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttct 7118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 27355 - 27291
Alignment:
Q  189 gtgatatagagtttggtgacatttatgacattgaccaattataatgtcacaatgcttgtgtttct 253  Q
    ||||||||||||| |||||||||  ||| |||| ||||| | |||| |||||||||| |||||||    
T  27355 gtgatatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttctgtttct 27291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University