View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_high_60 (Length: 248)
Name: NF14034_high_60
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_high_60 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 5 - 207
Target Start/End: Original strand, 2711547 - 2711749
Alignment:
| Q |
5 |
tgagatgaaggaggcagtttaacaatctcactattaagcactgaaacaactgtggccatattaggtctctcctttgcaatttcttgcacacagagaagtc |
104 |
Q |
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||||||| |||||| ||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2711547 |
tgagatggaggaggaagtttaacaatctcactattaagcattgaaacaactgcggccatagtaggtctctcctttgcaatttcttgcacacagagaagtc |
2711646 |
T |
|
| Q |
105 |
caatatgtatgcatctcaaaatctgatccagacaatcaggcttacatatttctagatctatcaaagatacaatgttctcttcaatccatattttccatgc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2711647 |
caatatgtatgcatctcaaaatctgatccagacaatcaggcttacatatttctagatctatcaaagatacaatgttctcttcaatccatattttccatgc |
2711746 |
T |
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| Q |
205 |
ctt |
207 |
Q |
| |
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||| |
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| T |
2711747 |
ctt |
2711749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 5 - 207
Target Start/End: Original strand, 2703888 - 2704090
Alignment:
| Q |
5 |
tgagatgaaggaggcagtttaacaatctcactattaagcactgaaacaactgtggccatattaggtctctcctttgcaatttcttgcacacagagaagtc |
104 |
Q |
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||||||| |||||| ||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| | ||||| |
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| T |
2703888 |
tgagatggaggaggaagtttaacaatctcactattaagcattgaaacaaatgtggccatggtaggtctctcctttgcaatttcttgcacacaaacaagtc |
2703987 |
T |
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| Q |
105 |
caatatgtatgcatctcaaaatctgatccagacaatcaggcttacatatttctagatctatcaaagatacaatgttctcttcaatccatattttccatgc |
204 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||| | ||||||| |||||| ||||||||| |
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| T |
2703988 |
caatatgtatgcatctcaaaatctgatccacataatcaggcttacatatttctggatctatcaaagatataatctcctcttcattccatagtttccatgc |
2704087 |
T |
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| Q |
205 |
ctt |
207 |
Q |
| |
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||| |
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| T |
2704088 |
ctt |
2704090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 2716503 - 2716701
Alignment:
| Q |
5 |
tgagatgaaggaggcagtttaacaatctcactattaagcactgaaacaactgtggccatattaggtctctcctttgcaatttcttgcacacagagaagtc |
104 |
Q |
| |
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||||||| | |||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
2716503 |
tgagatggatgaggaagtttaacaatctcactattaagcattgaaacaactgtggccatagtaggtctctcctttgcaatttcttgcacacaaagaagtc |
2716602 |
T |
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| Q |
105 |
caatatgtatgcatctcaaaatctgatccagacaatcaggcttacatatttctagatctatcaaagatacaatgttctcttcaatccatattttccatg |
203 |
Q |
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|||| ||||||||||||||||| | | ||| | |||||| |||||||||||| |||||||||||| ||||| | |||||| |||||| |||||||| |
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| T |
2716603 |
caatgtgtatgcatctcaaaatgttacccacataatcagcattacatatttcttgatctatcaaagctacaacctcatcttcattccatagtttccatg |
2716701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 2723126 - 2723324
Alignment:
| Q |
5 |
tgagatgaaggaggcagtttaacaatctcactattaagcactgaaacaactgtggccatattaggtctctcctttgcaatttcttgcacacagagaagtc |
104 |
Q |
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|
||||||| | |||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
2723126 |
tgagatggatgaggaagtttaacaatctcactattaagcattgaaacaactgtggccatagtaggtctctcctttgcaatttcttgcacacaaagaagtc |
2723225 |
T |
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| Q |
105 |
caatatgtatgcatctcaaaatctgatccagacaatcaggcttacatatttctagatctatcaaagatacaatgttctcttcaatccatattttccatg |
203 |
Q |
| |
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|||| ||||||||||||||||| | | ||| | |||||| |||||||||||| |||||||||||| ||||| | |||||| |||||| |||||||| |
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|
| T |
2723226 |
caatgtgtatgcatctcaaaatgttacccacataatcagcattacatatttcttgatctatcaaagctacaacctcatcttcattccatagtttccatg |
2723324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 2744957 - 2745155
Alignment:
| Q |
5 |
tgagatgaaggaggcagtttaacaatctcactattaagcactgaaacaactgtggccatattaggtctctcctttgcaatttcttgcacacagagaagtc |
104 |
Q |
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|
||||||| | |||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
2744957 |
tgagatggatgaggaagtttaacaatctcactattaagcattgaaacaactgtggccatagtaggtctctcctttgcaatttcttgcacacaaagaagtc |
2745056 |
T |
|
| Q |
105 |
caatatgtatgcatctcaaaatctgatccagacaatcaggcttacatatttctagatctatcaaagatacaatgttctcttcaatccatattttccatg |
203 |
Q |
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|||| ||||||||||||||||| | | ||| | |||||| |||||||||||| |||||||||||| ||||| | |||||| |||||| |||||||| |
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| T |
2745057 |
caatgtgtatgcatctcaaaatgttacccacataatcagcattacatatttcttgatctatcaaagctacaacctcatcttcattccatagtttccatg |
2745155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 36376912 - 36376868
Alignment:
| Q |
78 |
ttgcaatttcttgcacacagagaagtccaatatgtatgcatctca |
122 |
Q |
| |
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||||| ||||||||||||| ||||||||||| || |||||||||| |
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| T |
36376912 |
ttgcattttcttgcacacacagaagtccaatttgaatgcatctca |
36376868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 36401632 - 36401588
Alignment:
| Q |
78 |
ttgcaatttcttgcacacagagaagtccaatatgtatgcatctca |
122 |
Q |
| |
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||||| ||||||||||||| ||||||||||| || |||||||||| |
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| T |
36401632 |
ttgcattttcttgcacacacagaagtccaatttgaatgcatctca |
36401588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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