View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_high_66 (Length: 241)

Name: NF14034_high_66
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_high_66
NF14034_high_66
[»] chr2 (4 HSPs)
chr2 (1-109)||(23483232-23483341)
chr2 (181-227)||(23483412-23483458)
chr2 (46-109)||(21352346-21352409)
chr2 (46-109)||(22596082-22596145)
[»] chr4 (2 HSPs)
chr4 (32-109)||(34276955-34277032)
chr4 (31-109)||(42414570-42414648)
[»] chr3 (1 HSPs)
chr3 (46-109)||(1030468-1030531)
[»] chr5 (2 HSPs)
chr5 (32-109)||(41061210-41061287)
chr5 (53-109)||(12291411-12291467)
[»] chr8 (1 HSPs)
chr8 (31-109)||(4267352-4267430)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 23483232 - 23483341
Alignment:
Q  1 ataataaataaatattacaatttagatttgtggttcgatt-atgacaaagtgatccaaaattcgatctgatcttagtggcttttacaaatcaatatccaa 99  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  23483232 ataataaataaatattacaatttagatttgtggttcgatttatgacaaagtgatccaaaatttaatctgatcttagtggcttttacaaatcaatatccaa 23483331  T
Q  100 atgcatccaa 109  Q
    ||||||||||    
T  23483332 atgcatccaa 23483341  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 181 - 227
Target Start/End: Original strand, 23483412 - 23483458
Alignment:
Q  181 accaagtgatcaattgtttaaaaacacggttcgagttagcttatttc 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  23483412 accaagtgatcaattgtttaaaaacacggttcgagttagcttatttc 23483458  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 21352346 - 21352409
Alignment:
Q  46 aaagtgatccaaaattcgatctgatcttagtggcttttacaaatcaatatccaaatgcatccaa 109  Q
    ||||||||||||||| ||||| |||||||| || ||||||||| ||| ||||||| ||||||||    
T  21352346 aaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaa 21352409  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 22596145 - 22596082
Alignment:
Q  46 aaagtgatccaaaattcgatctgatcttagtggcttttacaaatcaatatccaaatgcatccaa 109  Q
    |||||||||| |||| |||||||||||||| |  ||||||||| ||| ||| ||||||||||||    
T  22596145 aaagtgatccgaaatccgatctgatcttagcgatttttacaaaacaacatcgaaatgcatccaa 22596082  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 34277032 - 34276955
Alignment:
Q  32 ggttcgattatgacaaagtgatccaaaattcgatctgatcttagtggcttttacaaatcaatatccaaatgcatccaa 109  Q
    ||||||||| ||| ||||||||||| ||||||||| |||||||| || ||||||||| ||| ||||||| ||||||||    
T  34277032 ggttcgattttgaaaaagtgatccagaattcgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaa 34276955  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 42414570 - 42414648
Alignment:
Q  31 tggttcgattatgacaaagtgatccaaaattcgatctgatcttagtggcttttacaaatcaatatccaaatgcatccaa 109  Q
    ||||||| || ||| ||||||||||||||| ||||| |||||||| || ||||||||| ||| ||||||| ||||||||    
T  42414570 tggttcggttttgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaa 42414648  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 1030531 - 1030468
Alignment:
Q  46 aaagtgatccaaaattcgatctgatcttagtggcttttacaaatcaatatccaaatgcatccaa 109  Q
    ||||||||||||||| ||||| |||||||| || ||||||||| ||| ||||||| ||||||||    
T  1030531 aaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaa 1030468  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 41061287 - 41061210
Alignment:
Q  32 ggttcgattatgacaaagtgatccaaaattcgatctgatcttagtggcttttacaaatcaatatccaaatgcatccaa 109  Q
    |||||| || ||| ||||| ||||||||| || || |||||||| || ||||||||| ||||||||||| ||||||||    
T  41061287 ggttcggttttgaaaaagtaatccaaaatccgttccgatcttagcggtttttacaaaacaatatccaaacgcatccaa 41061210  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 12291411 - 12291467
Alignment:
Q  53 tccaaaattcgatctgatcttagtggcttttacaaatcaatatccaaatgcatccaa 109  Q
    |||||||| |||||  ||||||| || ||||||||| ||| ||||||||||||||||    
T  12291411 tccaaaatccgatccaatcttagaggtttttacaaaacaacatccaaatgcatccaa 12291467  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 109
Target Start/End: Complemental strand, 4267430 - 4267352
Alignment:
Q  31 tggttcgattatgacaaagtgatccaaaattcgatctgatcttagtggcttttacaaatcaatatccaaatgcatccaa 109  Q
    ||||||| || ||| || |||||||||||| ||||| |||||||| || |||||||||  || ||||||| ||||||||    
T  4267430 tggttcggttttgaaaaggtgatccaaaatccgatccgatcttagcggtttttacaaaataacatccaaacgcatccaa 4267352  T

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