View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_high_71 (Length: 232)
Name: NF14034_high_71
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_high_71 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 39797477 - 39797246
Alignment:
| Q |
1 |
tcatcagcaaccttggagatgagtttcggtttcaagccaagtcgagcagcgcaagttaaagcattaccggcatttccacctccttgaaccttggaggaag |
100 |
Q |
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| T |
39797477 |
tcatcagcaaccttggagatgagtttcggtttcaagccaagtcgagcagcgcaagttaaagcatttccggcatttccacctccttgaaccttggaggaag |
39797378 |
T |
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| Q |
101 |
ttgttcggaccttatcatctggttttggatatccgtctacagtagctaagaaatccaccgtcgtcattccgaatccaacctgcacacacaaaattctata |
200 |
Q |
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| T |
39797377 |
ttgttcggaccttatcatctggttttggatatccgtctacagtagctaagaaatccaccgtcgtcattccgaatccaacctgcacacacaaaattctaga |
39797278 |
T |
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| Q |
201 |
tatctatctattcatctatatatacacatgca |
232 |
Q |
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| T |
39797277 |
tatctatctattcatttatatatacacatgca |
39797246 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 29929913 - 29929949
Alignment:
| Q |
55 |
gttaaagcattaccggcatttccacctccttgaacct |
91 |
Q |
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| T |
29929913 |
gttaaagcattgccggcattaccacctccttgaacct |
29929949 |
T |
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