View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_high_72 (Length: 230)
Name: NF14034_high_72
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_high_72 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 65 - 201
Target Start/End: Complemental strand, 17580679 - 17580543
Alignment:
| Q |
65 |
ccatgcaagttacgaattaactctccattaaatttactctttcaaacaaaaactccccattaatttgactttatgcatattgcataattaatacatcatg |
164 |
Q |
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| T |
17580679 |
ccatgcaagttacgaattaactctccattaaatttactctttcaaacaaaaactccccattaatttgactttatgcatattgcataattaatacatcatg |
17580580 |
T |
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| Q |
165 |
gttctattagctagaaaaataatccatcgattacttc |
201 |
Q |
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| T |
17580579 |
gttctattagctagaaaaataatccatcggttacttc |
17580543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 65 - 201
Target Start/End: Original strand, 14755947 - 14756083
Alignment:
| Q |
65 |
ccatgcaagttacgaattaactctccattaaatttactctttcaaacaaaaactccccattaatttgactttatgcatattgcataattaatacatcatg |
164 |
Q |
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| T |
14755947 |
ccatgcaaattacgaattaactctccattaaatttactctttcaaacaaaaacgccccattaatttgactttatgcatattgcataattaatacatcatg |
14756046 |
T |
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| Q |
165 |
gttctattagctagaaaaataatccatcgattacttc |
201 |
Q |
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| T |
14756047 |
gttctattagctagaaaaataatccatcgattacttc |
14756083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 39071531 - 39071488
Alignment:
| Q |
122 |
cattaatttgactttatgcatattgcataattaatacatcatgg |
165 |
Q |
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| T |
39071531 |
cattgatttgactttatgcatgttgcatgattaatacatcatgg |
39071488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 49702 - 49759
Alignment:
| Q |
115 |
aactccccattaatttgactttatgcatattgcataattaatacatcatggttctatt |
172 |
Q |
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| T |
49702 |
aactctccattaatttgactttatgcatgttgcatgattaatacatcatgggtctatt |
49759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 347962 - 348012
Alignment:
| Q |
115 |
aactccccattaatttgactttatgcatattgcataattaatacatcatgg |
165 |
Q |
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| T |
347962 |
aactctccattaatttgactttatgcatgttgcatgattaatacatcatgg |
348012 |
T |
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