View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_high_79 (Length: 216)
Name: NF14034_high_79
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_high_79 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 41716761 - 41716562
Alignment:
| Q |
1 |
ggttttgtttggttgaaacagaagaatagcataacacacaaatttgaaaagattgggaaacttgtttcctatgctactgaagtgactgcttatgttgaaa |
100 |
Q |
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| T |
41716761 |
ggttttgtttggttgaaacagaagaatagcataacacacaaatttgaaaagattgggaaacttgtttcctatgctactgaagtgactgcttatgttgaaa |
41716662 |
T |
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| Q |
101 |
atggtaagatcaagaaactcaatggtgtcaaagccaaagagcttttgatatggcttaacgtagctgatatttatgttgatgatccaccaactggtaaaat |
200 |
Q |
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| T |
41716661 |
atggtaagatcaagaaactcaatggtgtcaaagccaaagagcttttgatatggcttaacgtagctgatatttatgttgatgatccaccaactggtaaaat |
41716562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 45982176 - 45981977
Alignment:
| Q |
1 |
ggttttgtttggttgaaacagaagaatagcataacacacaaatttgaaaagattgggaaacttgtttcctatgctactgaagtgactgcttatgttgaaa |
100 |
Q |
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| T |
45982176 |
ggttttgtttggctgaaacagaagaaaagcataacacacaaatttgaaaagattgggaaacctgtttcctatgcaactgaagtaactgcttatgttgaaa |
45982077 |
T |
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| Q |
101 |
atggtaagatcaagaaactcaatggtgtcaaagccaaagagcttttgatatggcttaacgtagctgatatttatgttgatgatccaccaactggtaaaat |
200 |
Q |
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| T |
45982076 |
atggtaagatcaagaaattgaatggtgttaaaaccaaagagcttttgatttgggttactttgtgtgatatttatattgatgatccaccaactggtaaaat |
45981977 |
T |
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