View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_high_80 (Length: 216)

Name: NF14034_high_80
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_high_80
NF14034_high_80
[»] chr1 (23 HSPs)
chr1 (1-216)||(9233874-9234089)
chr1 (1-216)||(9384305-9384520)
chr1 (1-187)||(8956103-8956289)
chr1 (1-191)||(9453664-9453854)
chr1 (76-187)||(8942172-8942283)
chr1 (1-191)||(9432677-9432867)
chr1 (1-191)||(9486029-9486219)
chr1 (1-187)||(8932181-8932367)
chr1 (76-191)||(9399787-9399902)
chr1 (1-187)||(8920776-8920962)
chr1 (88-206)||(11011057-11011175)
chr1 (82-196)||(49728538-49728652)
chr1 (85-176)||(10974410-10974501)
chr1 (85-171)||(10979488-10979574)
chr1 (85-166)||(10903590-10903671)
chr1 (88-172)||(10914756-10914840)
chr1 (85-172)||(11007892-11007979)
chr1 (90-172)||(11004881-11004963)
chr1 (79-208)||(9056719-9056848)
chr1 (81-158)||(9464278-9464355)
chr1 (1-158)||(9488630-9488787)
chr1 (127-185)||(9320108-9320166)
chr1 (127-185)||(9350425-9350483)
[»] chr3 (1 HSPs)
chr3 (1-187)||(9159672-9159858)
[»] chr4 (2 HSPs)
chr4 (136-194)||(27696146-27696204)
chr4 (121-185)||(27692620-27692684)
[»] chr6 (2 HSPs)
chr6 (79-160)||(30955230-30955311)
chr6 (79-160)||(30944970-30945051)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 9234089 - 9233874
Alignment:
Q  1 tagaacaattctggagccatgtaacctaaagttcctcttgccgcagttaacggaacaatgctatcgttcacagggtaaagctttgcaagtccaaaatccg 100  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9234089 tagaacaattcaggagccatgtaacccaaagttcctcttgccgcagttaacggaacaatgctatcgttcacagggtaaagctttgcaagtccaaaatccg 9233990  T
Q  101 aaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatgcagatactctatccc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9233989 aaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatgcagatactctatccc 9233890  T
Q  201 acgagctattccgaga 216  Q
    ||||||||||||||||    
T  9233889 acgagctattccgaga 9233874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 9384305 - 9384520
Alignment:
Q  1 tagaacaattctggagccatgtaacctaaagttcctcttgccgcagttaacggaacaatgctatcgttcacagggtaaagctttgcaagtccaaaatccg 100  Q
    ||||||| ||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||    
T  9384305 tagaacagttcaggagccatgtaacccaaagttcctcttgccgcagttaaggtaacaatgctatcgttcacaggatatagctttgcaagtccaaaatccg 9384404  T
Q  101 aaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatgcagatactctatccc 200  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  9384405 aaacctttggaacaaactcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacatccttgatgcagatattctatccc 9384504  T
Q  201 acgagctattccgaga 216  Q
    ||||||||||||||||    
T  9384505 acgagctattccgaga 9384520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 8956103 - 8956289
Alignment:
Q  1 tagaacaattctggagccatgtaacctaaagttcctcttgccgcagttaacggaacaatgctatcgttcacagggtaaagctttgcaagtccaaaatccg 100  Q
    ||||| ||||| |||||||||||||| |  ||||||||||| || || || |  |||||||||| ||  ||||| ||||| |||||||| ||||| || |    
T  8956103 tagaataattccggagccatgtaaccaattgttcctcttgcagccgtcaaagttacaatgctattgtcaacaggataaagttttgcaagaccaaagtctg 8956202  T
Q  101 aaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatgca 187  Q
    ||||||| |  | ||| |||| ||| |||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  8956203 aaaccttggcgatgaagtctttgtcaagaagaatgttatgaggcttgatatcaaaatgtaaaatttgcatgtcacaaccttgatgca 8956289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 9453854 - 9453664
Alignment:
Q  1 tagaacaattctggagccatgtaacctaaagttcctcttgccgcagttaacggaacaatgctatcgttcacagggtaaagctttgcaagtccaaaatccg 100  Q
    ||||||||||| |||||||||||||| |  ||||||||||| || || || |  |||||||||| ||  | ||| |||||||||||||| |||||||| |    
T  9453854 tagaacaattcaggagccatgtaaccaattgttcctcttgctgctgtcaaagcgacaatgctattgtcaataggataaagctttgcaagaccaaaatctg 9453755  T
Q  101 aaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatgcagata 191  Q
    |||| || || | ||||| |||||| ||||| || || |||||||| ||||||||||| | ||||||||||||||| |||||||| |||||    
T  9453754 aaactttagggatgaaattttcgtcaagaaggatgttgtgaggcttaatatcaaaatgcaaaatttgcatatcacacccttgatgaagata 9453664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 8942172 - 8942283
Alignment:
Q  76 taaagctttgcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcac 175  Q
    ||||| |||||||| |||||||| |||||||||| || ||| || | ||| ||||| || ||||||||||||||||||||||||| ||||||||| ||||    
T  8942172 taaagttttgcaagaccaaaatctgaaacctttgcaatgaagtcctggtcaagaagtatgttatgaggcttgatatcaaaatgtaaaatttgcatgtcac 8942271  T
Q  176 aaccttgatgca 187  Q
    ||||||||||||    
T  8942272 aaccttgatgca 8942283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 9432867 - 9432677
Alignment:
Q  1 tagaacaattctggagccatgtaacctaaagttcctcttgccgcagttaacggaacaatgctatcgttcacagggtaaagctttgcaagtccaaaatccg 100  Q
    ||||||||||| |||||||||||||| |  ||||||||||| || || || |   ||||||| | ||  | ||| |||||||||||||| ||||| ||||    
T  9432867 tagaacaattcaggagccatgtaaccaattgttcctcttgctgccgtcaaagtggcaatgcttttgtcaataggataaagctttgcaagaccaaagtccg 9432768  T
Q  101 aaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatgcagata 191  Q
    |||| || || | ||||| |||||| ||||| || || |||||||| ||||||||||| | |||||||||||||||||| ||||| |||||    
T  9432767 aaactttagggatgaaattttcgtccagaaggatgttgtgaggcttaatatcaaaatgcaaaatttgcatatcacaaccctgatgaagata 9432677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 9486219 - 9486029
Alignment:
Q  1 tagaacaattctggagccatgtaacctaaagttcctcttgccgcagttaacggaacaatgctatcgttcacagggtaaagctttgcaagtccaaaatccg 100  Q
    ||||||||||| |||||||||||||| |  ||||||||||| || || || |   ||||||| | ||  | ||| |||||||||||||| ||||| ||||    
T  9486219 tagaacaattcaggagccatgtaaccgattgttcctcttgctgctgtcaaggtggcaatgcttttgtcaataggataaagctttgcaagaccaaagtccg 9486120  T
Q  101 aaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatgcagata 191  Q
    |||| || || || |||| |||||| |||||||| || |||||||| ||||||||||| | |||||||||| |||| |||||||| |||||    
T  9486119 aaactttagggacaaaattttcgtcaagaagaatgttgtgaggcttaatatcaaaatgcaaaatttgcataccacagccttgatgaagata 9486029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 8932181 - 8932367
Alignment:
Q  1 tagaacaattctggagccatgtaacctaaagttcctcttgccgcagttaacggaacaatgctatcgttcacagggtaaagctttgcaagtccaaaatccg 100  Q
    |||||||||||||| ||||||||||| |  ||||||||||| ||||| || |  |||||||||| ||  || || ||||| |||||||| ||||| || |    
T  8932181 tagaacaattctggtgccatgtaaccaattgttcctcttgcagcagtcaaagttacaatgctattgtcaactggataaagttttgcaagaccaaagtctg 8932280  T
Q  101 aaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatgca 187  Q
    | || || |  | ||| || | ||| ||||| || ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  8932281 atactttggcgatgaagtcctggtcaagaagtatgttatgaggcttgatatcgaaatgtaaaatttgcatgtcacaaccttgatgca 8932367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 76 - 191
Target Start/End: Original strand, 9399787 - 9399902
Alignment:
Q  76 taaagctttgcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcac 175  Q
    |||||||||||||| ||||| |||||||| || || | ||||| |||||| ||||| || || |||||||| ||||||||||| | ||||||||||||||    
T  9399787 taaagctttgcaagaccaaagtccgaaactttagggatgaaattttcgtcaagaaggatgttgtgaggcttaatatcaaaatgcaaaatttgcatatcac 9399886  T
Q  176 aaccttgatgcagata 191  Q
    |||| ||||| |||||    
T  9399887 aaccctgatgaagata 9399902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 8920776 - 8920962
Alignment:
Q  1 tagaacaattctggagccatgtaacctaaagttcctcttgccgcagttaacggaacaatgctatcgttcacagggtaaagctttgcaagtccaaaatccg 100  Q
    |||||||| ||||| ||||||||||| |  ||||||||||| ||||| || |  |||||||||| ||  || || ||||| |||||||| || || || |    
T  8920776 tagaacaactctggtgccatgtaaccaattgttcctcttgcagcagtcaaagttacaatgctattgtcaactggataaagttttgcaagaccgaagtctg 8920875  T
Q  101 aaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatgca 187  Q
    |||| || |  | ||| || | ||| ||||| || |||||||||||||| |||||||||| ||||||||| ||||| ||||||||||    
T  8920876 aaactttggcgatgaagtcatggtcaagaagtatgttatgaggcttgatgtcaaaatgtaaaatttgcatgtcacagccttgatgca 8920962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 206
Target Start/End: Original strand, 11011057 - 11011175
Alignment:
Q  88 agtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatgca 187  Q
    ||||||||||| ||||| ||||||  ||||| ||| || |||||||| ||||||||||| |||||||| |||||||||| |||||  || || |||||||    
T  11011057 agtccaaaatcagaaacttttggattgaaattttcatcaagaagaatgttatgaggctttatatcaaagtgtagaattttcatattgcatccatgatgca 11011156  T
Q  188 gatactctatcccacgagc 206  Q
      ||||| || ||||||||    
T  11011157 agtactcaatgccacgagc 11011175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 49728652 - 49728538
Alignment:
Q  82 tttgcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaacctt 181  Q
    |||||||||||||||||||||||||| |||   ||||| |||||||| |  ||||||||||| || ||||||||||||| |||||   |||  |||||||    
T  49728652 tttgcaagtccaaaatccgaaaccttaggacaaaaatcatcgtctagcaatatattatgaggttttatatcaaaatgtaaaattttagtattgcaacctt 49728553  T
Q  182 gatgcagatactcta 196  Q
      |||||||||||||    
T  49728552 tgtgcagatactcta 49728538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 10974410 - 10974501
Alignment:
Q  85 gcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcaca 176  Q
    |||||||||||||| ||||| ||||||  ||||| ||| || ||||| ||  |||||||||| |||||||| |||||||||| |||||||||    
T  10974410 gcaagtccaaaatcagaaacttttggattgaaatattcatcaagaaggatggtatgaggctttatatcaaagtgtagaattttcatatcaca 10974501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 171
Target Start/End: Original strand, 10979488 - 10979574
Alignment:
Q  85 gcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcata 171  Q
    |||||||||||||| ||||| ||||||  ||||| ||| || ||||| || ||||||||||| |||||||| |||||||||| ||||    
T  10979488 gcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcata 10979574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 10903590 - 10903671
Alignment:
Q  85 gcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaattt 166  Q
    |||||||||||||| ||||| ||||||  ||||  ||| || |||||||| ||||||||||| |||||||| ||||||||||    
T  10903590 gcaagtccaaaatcagaaacttttggattgaaactttcatcaagaagaatgttatgaggctttatatcaaagtgtagaattt 10903671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 10914756 - 10914840
Alignment:
Q  88 agtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatat 172  Q
    ||||||||||| ||||| ||||||  ||||| ||| || ||||| || ||||||||||| |||||||| |||||||||| |||||    
T  10914756 agtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatat 10914840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 11007892 - 11007979
Alignment:
Q  85 gcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatat 172  Q
    |||||||||||||| ||||| ||||||  ||||| ||| || ||||| || ||||||||||| || ||||| |||||||||| |||||    
T  11007892 gcaagtccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatgtcaaagtgtagaattttcatat 11007979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 11004963 - 11004881
Alignment:
Q  90 tccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatat 172  Q
    ||||||||| ||||| ||||||  ||||| ||| || ||||| || ||||||||||| |||||||| |||||||||| |||||    
T  11004963 tccaaaatcagaaacttttggattgaaattttcatcaagaaggatgttatgaggctttatatcaaagtgtagaattttcatat 11004881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 208
Target Start/End: Original strand, 9056719 - 9056848
Alignment:
Q  79 agctttgcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaac 178  Q
    |||||||| |||||||| || || | ||||||||  ||||  ||||| || || ||||| || ||||||||||||||||| | ||||| ||| ||||| |    
T  9056719 agctttgcgagtccaaagtcagatatctttggaataaaattctcgtcaagtaggatattgtgtggcttgatatcaaaatgcaaaattttcatttcacatc 9056818  T
Q  179 cttgatgcagatactctatcccacgagcta 208  Q
    | | ||| ||||| || |||||||||||||    
T  9056819 cattatggagataatcaatcccacgagcta 9056848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 9464278 - 9464355
Alignment:
Q  81 ctttgcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatg 158  Q
    |||||| |||| |||||||||||||||||||  ||| | | |||| |||||||| ||||||||||| || ||||||||    
T  9464278 ctttgctagtcaaaaatccgaaacctttggagtgaagtttacgtcaagaagaatgttatgaggctttatgtcaaaatg 9464355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 9488630 - 9488787
Alignment:
Q  1 tagaacaattctggagccatgtaacctaaagttcctcttgccgcagttaacggaacaatgctatcgttcacagggtaaagctttgcaagtccaaaatccg 100  Q
    |||||||||||||| |||||||| || | |||||||||||| || || |  |  |||||||||| || |   || || | |||||| |||| |||||| |    
T  9488630 tagaacaattctggtgccatgtatcccatagttcctcttgcagctgtaagagacacaatgctattgtccgttggatataactttgctagtctaaaatctg 9488729  T
Q  101 aaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatg 158  Q
    |||||||||||  ||| | | |||| |||||||| ||||||||||| || ||||||||    
T  9488730 aaacctttggagtgaagtttacgtcaagaagaatgttatgaggctttatgtcaaaatg 9488787  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 9320108 - 9320166
Alignment:
Q  127 agaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatg 185  Q
    ||||| || ||||| ||||||||||||||||| | ||||||||| ||||| ||||||||    
T  9320108 agaaggatgttatggggcttgatatcaaaatgcaaaatttgcatgtcacatccttgatg 9320166  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 185
Target Start/End: Original strand, 9350425 - 9350483
Alignment:
Q  127 agaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatg 185  Q
    ||||| || ||||| ||||||||||||||||| | ||||||||| ||||| ||||||||    
T  9350425 agaaggatgttatggggcttgatatcaaaatgcaaaatttgcatgtcacatccttgatg 9350483  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 9159672 - 9159858
Alignment:
Q  1 tagaacaattctggagccatgtaacctaaagttcctcttgccgcagttaacggaacaatgctatcgttcacagggtaaagctttgcaagtccaaaatccg 100  Q
    |||||||| || |||||||| ||||| |  ||||||||||| ||||||||    ||||| |||| ||    ||| |||||||||||||| ||||| || |    
T  9159672 tagaacaactcgggagccatataaccaattgttcctcttgctgcagttaaatttacaatactattgtcattaggataaagctttgcaagaccaaagtcag 9159771  T
Q  101 aaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatgca 187  Q
    ||||||| || |  || |  ||||| ||||| || ||||| ||||||||||||||||| |  |||||||| ||||| ||||||||||    
T  9159772 aaaccttggggataaagttctcgtcaagaagtatgttatggggcttgatatcaaaatgcaagatttgcatgtcacatccttgatgca 9159858  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 27696204 - 27696146
Alignment:
Q  136 ttatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatgcagatactc 194  Q
    |||||||| |||||||||||||| |||||| |  |||||||||||||||| ||||||||    
T  27696204 ttatgaggtttgatatcaaaatggagaattcgtttatcacaaccttgatgaagatactc 27696146  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 27692620 - 27692684
Alignment:
Q  121 tcgtctagaagaatattatgaggcttgatatcaaaatgtagaatttgcatatcacaaccttgatg 185  Q
    ||||| |||||||| |||||||| || |||||||| ||||  |||||||| ||||||||||||||    
T  27692620 tcgtcaagaagaatgttatgaggttttatatcaaagtgtatgatttgcatgtcacaaccttgatg 27692684  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 30955311 - 30955230
Alignment:
Q  79 agctttgcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgta 160  Q
    |||||||||||||||||||| |||| |||||||   |||| ||| |||| |||||| ||||| || || |||||||||||||    
T  30955311 agctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 30955230  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 30945051 - 30944970
Alignment:
Q  79 agctttgcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgta 160  Q
    |||||||||||||||||||| |||| |||||||   |||| ||| |||| |||||| ||||| || || || ||||||||||    
T  30945051 agctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgcggttttatgtcaaaatgta 30944970  T

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