View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_low_1 (Length: 747)

Name: NF14034_low_1
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_low_1
NF14034_low_1
[»] chr4 (25 HSPs)
chr4 (335-661)||(31528975-31529301)
chr4 (22-333)||(31161694-31162004)
chr4 (331-635)||(31159712-31160016)
chr4 (337-638)||(31020316-31020617)
chr4 (337-638)||(31030197-31030498)
chr4 (337-638)||(31488935-31489236)
chr4 (353-636)||(31496292-31496575)
chr4 (333-652)||(31150816-31151135)
chr4 (338-638)||(31501460-31501760)
chr4 (22-221)||(31150400-31150598)
chr4 (333-652)||(31476336-31476655)
chr4 (333-518)||(31162093-31162276)
chr4 (22-221)||(31159301-31159499)
chr4 (22-131)||(31476881-31476990)
chr4 (465-638)||(31482186-31482362)
chr4 (22-100)||(31496865-31496943)
chr4 (22-86)||(31019852-31019916)
chr4 (22-86)||(31029733-31029797)
chr4 (22-86)||(31489630-31489694)
chr4 (384-519)||(31163523-31163658)
chr4 (660-732)||(31035053-31035121)
chr4 (22-99)||(31502035-31502112)
chr4 (76-196)||(31034087-31034207)
chr4 (446-518)||(31244507-31244579)
chr4 (22-102)||(31245021-31245101)
[»] chr6 (27 HSPs)
chr6 (465-634)||(12781322-12781491)
chr6 (465-634)||(12782073-12782242)
chr6 (330-604)||(33641985-33642259)
chr6 (333-622)||(31566474-31566763)
chr6 (457-603)||(33060120-33060266)
chr6 (465-634)||(12785512-12785681)
chr6 (330-601)||(33288013-33288284)
chr6 (113-263)||(12785831-12785977)
chr6 (330-524)||(33390511-33390705)
chr6 (466-603)||(33361072-33361209)
chr6 (465-622)||(33265455-33265612)
chr6 (465-622)||(33274599-33274756)
chr6 (331-604)||(33306925-33307198)
chr6 (465-525)||(9169431-9169491)
chr6 (353-406)||(13608640-13608693)
chr6 (22-135)||(31560712-31560825)
chr6 (465-516)||(12786252-12786303)
chr6 (465-524)||(33403184-33403243)
chr6 (22-135)||(9168838-9168951)
chr6 (22-214)||(33642427-33642618)
chr6 (465-638)||(33412491-33412664)
chr6 (113-263)||(12781641-12781787)
chr6 (25-81)||(13609093-13609149)
chr6 (19-83)||(33059624-33059688)
chr6 (22-87)||(33273856-33273921)
chr6 (19-52)||(33287603-33287636)
chr6 (22-83)||(33390136-33390197)
[»] chr2 (2 HSPs)
chr2 (330-622)||(17438039-17438331)
chr2 (22-221)||(17438646-17438844)
[»] chr8 (2 HSPs)
chr8 (353-406)||(6472955-6473008)
chr8 (548-601)||(6473150-6473203)
[»] scaffold1749 (1 HSPs)
scaffold1749 (22-86)||(63-127)
[»] scaffold0428 (1 HSPs)
scaffold0428 (22-86)||(8824-8888)
[»] chr5 (1 HSPs)
chr5 (480-513)||(16466056-16466089)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 335 - 661
Target Start/End: Original strand, 31528975 - 31529301
Alignment:
Q  335 tacttacttatgacgcacatcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcaccatttgagagtcatgtttgaatgtttcc 434  Q
    ||||||||||| ||| | ||||||||| || |||||||| ||||| || ||||||| |||||||| |||||  |  | || ||| ||||||||| |||||    
T  31528975 tacttacttatcacgtatatcccaacctgaaagattggcgacttgcgtgagagctgtcctccatccttgcaggacctcagtgtcttgtttgaatctttcc 31529074  T
Q  435 tcatgttcagcaaaggctattttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagtt 534  Q
    |||||||  ||||| ||| |||||||| | ||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||| | | ||||    
T  31529075 tcatgttgggcaaatgcttttttataactcccactttgctttcgcacctcggaaggatcaacatcatagaaaacagggagaacacgttttccagaaagtt 31529174  T
Q  535 gactgcattcaagaatcttttccaattctcgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgc 634  Q
    |   ||| | ||| || | || |||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||    |||||||||| || ||    
T  31529175 gtacgcaatgaaggatgtattgcaattcccgcaagcaccaagttgaggaagcatagttgtttgagaagacaacaatgaaagtccgagaggcttcgatagc 31529274  T
Q  635 acgatgcagttcaggtgcaacagattc 661  Q
    |||| | ||||||||||| | ||||||    
T  31529275 acgaaggagttcaggtgctatagattc 31529301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 22 - 333
Target Start/End: Original strand, 31161694 - 31162004
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaaaaccttttctaattctcccattggagaattcatcc 121  Q
    ||||||||||| ||||||||||||| ||||||||| || ||||||| ||| || ||||||||||||   |||||||||||| |  |  |||||| |||||    
T  31161694 ttccctattccacccatcccacaaactcctacaacccgcacatcatcaaccgaatccaaaagtaaatgtttttctaattcttctgtaagagaatccatcc 31161793  T
Q  122 caaccaaatctttttggaacacttgaaaacttgtaacccaatatatttataatttgttcaatgatcttttcaatctctgcaaattgtggcctgcaagttt 221  Q
    || | ||||  ||| |||| ||||| | |||||||||||| |||||| ||||||| ||| | ||||||||||||||  |||     | || |||||||||    
T  31161794 cagctaaataattt-ggaagacttgtagacttgtaacccagtatattcataatttcttcgacgatcttttcaatctgagca-----tcgc-tgcaagttt 31161886  T
Q  222 aaaacagttaaccaacaacaccaaattacaacatacca------aaacataaagcaccaatacatgacaaaataacagtttttattctttttaaaaaact 315  Q
    |||||||||||||||||||||||||| |||  ||||||      ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31161887 aaaacagttaaccaacaacaccaaatcacagtataccaaaaccaaaacataaagcaccaatacatgacaaaataacagtttttattctttttagaaaact 31161986  T
Q  316 ctcttttgattaattaaa 333  Q
    |||||||| |||||||||    
T  31161987 ctcttttggttaattaaa 31162004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 331 - 635
Target Start/End: Original strand, 31159712 - 31160016
Alignment:
Q  331 aaattacttacttatgacgcacatcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcaccatttgagagtcatgtttgaatgt 430  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||| ||||| |  || ||||||| |||| |    
T  31159712 aaatttcttacttatgatgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctttgtaccatctctgattcatgttggaatct 31159811  T
Q  431 ttcctcatgttcagcaaaggctattttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatat 530  Q
    ||| || ||||  |||| ||||  |  |||| ||||| |||| | || ||| ||||||||||||||||||||||||| ||| ||||||||  ||| | |     
T  31159812 ttcttcgtgtttggcaagggcttctccataacttccattttgatgtctcacctcagaaggatcaacatcatagaaaatagggagaacacgagttccagaa 31159911  T
Q  531 agttgactgcattcaagaatcttttccaattctcgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaa 630  Q
    | ||||||||| | ||| || | |||||| |||||||||||||| ||||||||||||||||||||||||||||  ||||| ||||| |  ||||||||||    
T  31159912 acttgactgcagtgaaggatgtattccaactctcgcaagcaccatgttgaggaagcatagttttttgagaagagtacaataaaaacctttgaggcttcaa 31160011  T
Q  631 ttgca 635  Q
    |||||    
T  31160012 ttgca 31160016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 337 - 638
Target Start/End: Original strand, 31020316 - 31020617
Alignment:
Q  337 cttacttatgacgcacatcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcaccatttgagagtcatgtttgaatgtttcctc 436  Q
    ||||||||| ||| | |||||| ||||||| |||  | |||||||| |||||| ||||||| ||||| ||||  ||||||||||||| ||||||||  ||    
T  31020316 cttacttatcacgaagatcccagccagagatattccccacttgtgtcagagcttccctccaactttgtaccacatgagagtcatgttggaatgtttgttc 31020415  T
Q  437 atgttcagcaaaggctattttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttga 536  Q
    |||||  | |||||||      ||| ||||  |||| | || ||| |||||||||||||||||||| |||||||| ||||||||| ||| | | | ||||    
T  31020416 atgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccagaaacttga 31020515  T
Q  537 ctgcattcaagaatcttttccaattctcgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcac 636  Q
    ||||| ||||| || | | |||||||||||||||||||||||||||||| ||||||||| |||| |||| |||||||||| |||||  ||||||||||||    
T  31020516 ctgcagtcaaggatgtgtaccaattctcgcaagcaccaagttgaggaagaatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcac 31020615  T
Q  637 ga 638  Q
    ||    
T  31020616 ga 31020617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 337 - 638
Target Start/End: Original strand, 31030197 - 31030498
Alignment:
Q  337 cttacttatgacgcacatcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcaccatttgagagtcatgtttgaatgtttcctc 436  Q
    ||||||||| ||| | |||||| ||||||| |||  | |||||||| |||||| ||||||| ||||| ||||  ||||| ||||||| ||||||||  ||    
T  31030197 cttacttatcacgaagatcccagccagagatattccccacttgtgtcagagcttccctccaactttgtaccacatgagattcatgttggaatgtttgttc 31030296  T
Q  437 atgttcagcaaaggctattttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttga 536  Q
    |||||  | |||||||      ||| ||||  |||| | || ||| |||||||||||||||||||| |||||||| ||||||||| ||| | | | ||||    
T  31030297 atgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccagaaacttga 31030396  T
Q  537 ctgcattcaagaatcttttccaattctcgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcac 636  Q
    ||||| ||||| || | | |||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||||  ||||||||||||    
T  31030397 ctgcagtcaaggatgtgtaccaattctcgcaagcaccaagttgaggaagcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcac 31030496  T
Q  637 ga 638  Q
    ||    
T  31030497 ga 31030498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 337 - 638
Target Start/End: Complemental strand, 31489236 - 31488935
Alignment:
Q  337 cttacttatgacgcacatcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcaccatttgagagtcatgtttgaatgtttcctc 436  Q
    ||||||||| ||| | |||||| || |||| |||  | |||||||| |||||| ||||||||||||| ||||  ||||||||||||| ||||||||  ||    
T  31489236 cttacttatcacgaagatcccagcctgagatattccccacttgtgtcagagcttccctccatctttgtaccacatgagagtcatgttggaatgtttgttc 31489137  T
Q  437 atgttcagcaaaggctattttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttga 536  Q
    |||||  | |||||||      ||| ||||  |||| | || ||| |||||||||||||||||||| |||||||| ||||||||| ||| | | | ||||    
T  31489136 atgtttggaaaaggcttcaccgtaaattcctttttgatgtctcacctcagaaggatcaacatcataaaaaacaggaagaacacgtcttccaaaaacttga 31489037  T
Q  537 ctgcattcaagaatcttttccaattctcgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcac 636  Q
    ||| | | ||| || | |||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||||  ||||||||||||    
T  31489036 ctgtagtgaaggatgtattccaattctcgcaagcaccaagttgaggaagcatagtttttggagaggaccgcaatgaaaacctgagacccttcaattgcac 31488937  T
Q  637 ga 638  Q
    ||    
T  31488936 ga 31488935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 353 - 636
Target Start/End: Complemental strand, 31496575 - 31496292
Alignment:
Q  353 atcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcaccatttgagagtcatgtttgaatgtttcctcatgttcagcaaaggct 452  Q
    |||||||||||||||||  || |||||| |||||||| ||||||||||||||||||| |||||||| |||| |||| |||  |||||||   |||| |||    
T  31496575 atcccaaccagagagatcagcgacttgtattagagcttccctccatctttgcaccatctgagagtcttgttggaatctttgttcatgtttgacaaatgct 31496476  T
Q  453 attttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatag-ttgactgcattcaagaatc 551  Q
         |||| |||||||||||||||||||   |||||| ||||||||||||||||||||||||||| |||||  | |||  |||||  |||||||| |||    
T  31496475 tcaccataaattccactttgctttcgcaccatagaagggtcaacatcatagaaaacaggcagaacatgttttttagataccttgacc-cattcaaggatc 31496377  T
Q  552 ttttccaattctcgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcac 636  Q
    ||||| |||||| |||||||| |||||||| ||||||||||  |||| ||||||||||  ||||| ||||||  |||||||||||    
T  31496376 ttttctaattcttgcaagcacgaagttgagaaagcatagttccttgataagaccacaacaaaaacctgagagttttcaattgcac 31496292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 333 - 652
Target Start/End: Original strand, 31150816 - 31151135
Alignment:
Q  333 attacttacttatgacgcacatcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcaccatttgagagtcatgtttgaatgttt 432  Q
    ||||||||||||| ||| |||||||| |||||||||||||| |||||||| || ||| |||||||||||||||| |||| | |||  |||| |||| |||    
T  31150816 attacttacttataacgtacatcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatcttt 31150915  T
Q  433 cctcatgttcagcaaaggctattttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatag 532  Q
    | ||||||| ||| ||||||     ||||  |||  |||| | |||||| || || ||||||||||||||||| ||||||||||||||||||| | ||||    
T  31150916 cttcatgtttagctaaggcttcagcataacatcctttttgatatcgcacctctgatggatcaacatcatagaacacaggcagaacacgttttccagatag 31151015  T
Q  533 ttgactgcattcaagaatcttttccaattctcgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaatt 632  Q
    ||||  || || ||| ||    |||||||||||||| ||||||  ||||||||||||||| || ||||| |||||||  ||||  |||||| ||||||||    
T  31151016 ttgaaagctttgaagtatgcactccaattctcgcaaacaccaaactgaggaagcatagttcttagagaaaaccacaacaaaaatctgagagtcttcaatt 31151115  T
Q  633 gcacgatgcagttcaggtgc 652  Q
    || ||| | |||||||||||    
T  31151116 gctcgaaggagttcaggtgc 31151135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 338 - 638
Target Start/End: Complemental strand, 31501760 - 31501460
Alignment:
Q  338 ttacttatgacgcacatcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcaccatttgagagtcatgtttgaatgtttcctca 437  Q
    |||||||| ||| | ||| |||||||| |||  ||| |||||||| |||||| ||||||||||| ||||||| |||||||| |||| |||| |||  |||    
T  31501760 ttacttatcacgtagatcgcaaccagatagaccggcgacttgtgtcagagcttccctccatcttagcaccatctgagagtcttgttggaatatttgttca 31501661  T
Q  438 tgttcagcaaaggctattttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatata-gttga 536  Q
    ||||   |||| |||     |||| | |||||||||||||||||  | | ||||||||||||||||||||||||||||||| |||||  | ||| || ||    
T  31501660 tgtttgacaaatgcttcacaataaatcccactttgctttcgcaccacgggaggatcaacatcatagaaaacaggcagaacatgttttttagatacgtgga 31501561  T
Q  537 ctgcattcaagaatcttttccaattctcgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcac 636  Q
    | ||||||||| |||||||| |||||| ||||||||||| ||||||||||||||||  |||||| |||| |||  |||| || |||  ||||||||||||    
T  31501560 c-gcattcaaggatcttttctaattcttgcaagcaccaaattgaggaagcatagttccttgagaggaccgcaacaaaaatataagaatcttcaattgcac 31501462  T
Q  637 ga 638  Q
    ||    
T  31501461 ga 31501460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 31150400 - 31150598
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaaaaccttttctaattctcccattggagaattcatcc 121  Q
    ||||||| ||| ||||||||||||||||||||||| || ||||||| ||  |||||||||||||||   |||||||||||    |  ||||||| |||||    
T  31150400 ttccctactccacccatcccacaaattcctacaacacggacatcatcaagcgagtccaaaagtaaatgtttttctaattcatgtagaggagaatgcatcc 31150499  T
Q  122 caaccaaatctttttggaacacttgaaaacttgtaacccaatatatttataatttgttcaatgatcttttcaatctctgcaaattgtggcctgcaagttt 221  Q
    | || |||| ||||||||| | | ||||||||||||||||| ||||||| ||| | ||||| |||||||||||||||||||  |||||||||||||||||    
T  31150500 cgactaaat-tttttggaagattagaaaacttgtaacccaacatatttacaatctcttcaacgatcttttcaatctctgcatgttgtggcctgcaagttt 31150598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 333 - 652
Target Start/End: Complemental strand, 31476655 - 31476336
Alignment:
Q  333 attacttacttatgacgcacatcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcaccatttgagagtcatgtttgaatgttt 432  Q
    |||| |||||||| ||| | ||||||||||||||||| ||| |||||||| |||||||||||||||| | |||||||||||||||| ||||||||| | |    
T  31476655 attatttacttatcacgtagatcccaaccagagagatcggcgacttgtgtcagagctgccctccatcgtagcaccatttgagagtcttgtttgaatctgt 31476556  T
Q  433 cctcatgttcagcaaaggctattttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatag 532  Q
       ||||||   |||| |||    ||||| | ||| |||||||||||||   ||||||||||||||||||||| ||||| ||||||   |||  | ||      
T  31476555 gtccatgttggacaaatgcttcactataaatcccagtttgctttcgcaccaaagaaggatcaacatcatagaacacaggtagaacatactttttagatgc 31476456  T
Q  533 ttgactgcattcaagaatcttttccaattctcgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaatt 632  Q
    ||||   ||    || || | ||||||||||  |||||||||||||||| |||| ||||| ||||| |||||||||| |||||| |||||  ||||||||    
T  31476455 ttgaacacaacacaggatgtattccaattctttcaagcaccaagttgagaaagcgtagttctttgacaagaccacaacgaaaacctgagacccttcaatt 31476356  T
Q  633 gcacgatgcagttcaggtgc 652  Q
    ||| ||   |||||||||||    
T  31476355 gcatgaaagagttcaggtgc 31476336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 333 - 518
Target Start/End: Original strand, 31162093 - 31162276
Alignment:
Q  333 attacttacttatgacgcacatcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcaccatttgagagtcatgtttgaatgttt 432  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||||||| ||||| ||||||||||||||||||| | |||||| |||| |||| |||    
T  31162093 attacttacttatgacgcacatcccaaccagaga--ttggcgacttgtgtttgagcttccctccatctttgcaccatctcagagtcttgttggaatcttt 31162190  T
Q  433 cctcatgttcagcaaaggctattttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaaca 518  Q
      |||||||    |||||||     |||||||||  |||| | || ||  ||| ||||||||||||||||||||||||||||||||    
T  31162191 gttcatgtttgaaaaaggcttcaacataatttcctttttgatatctcatctcataaggatcaacatcatagaaaacaggcagaaca 31162276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 31159301 - 31159499
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaaaaccttttctaattctcccattggagaattcatcc 121  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |  ||| ||| || | | || ||| |||| || |    
T  31159301 ttccctattccacccatcccacaaattcctacaacccgaacatcatcaacggagtccaaaagtaatagatttgctactttttctataggataatttattc 31159400  T
Q  122 caaccaaatctttttggaacacttgaaaacttgtaacccaatatatttataatttgttcaatgatcttttcaatctctgcaaattgtggcctgcaagttt 221  Q
    |||| || || |||||||| || |||||| |||| |||| |||||||  | || | |||||  |||||||||||||||||| |||| |||||| ||||||    
T  31159401 caactaattc-ttttggaagacatgaaaatttgtgacccgatatattcgttatctcttcaacaatcttttcaatctctgcatattgaggcctgaaagttt 31159499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 31476990 - 31476881
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaaaaccttttctaattctcccattggagaattcatcc 121  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||| ||| |||||||||||||||| |||||||||||||    | ||||||| |||||    
T  31476990 ttccctattccacccatcccacaaattcctacaacatgaacatcatcaacagagtccaaaagtaaaagcttttctaattcttgtctaggagaatccatcc 31476891  T
Q  122 caaccaaatc 131  Q
    |||| |||||    
T  31476890 caactaaatc 31476881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 465 - 638
Target Start/End: Complemental strand, 31482362 - 31482186
Alignment:
Q  465 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaa---tcttttccaatt 561  Q
    |||||||||||||| || ||||| ||||  |||||||||||||||| | |||||||||||    || |||||||||| | |||||   | | | ||||||    
T  31482362 ccactttgctttcgtacctcagatggattgacatcatagaaaacagtccgaacacgtttttctgatggttgactgcagtgaagaaggatgtataccaatt 31482263  T
Q  562 ctcgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcacga 638  Q
    | ||||||||||||||||||||||||||  | || || |||||||| |||||||  |||||| ||||||||||||||    
T  31482262 cacgcaagcaccaagttgaggaagcataactcttagacaagaccacgatgaaaatctgagagacttcaattgcacga 31482186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 31496943 - 31496865
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaaaaccttttctaatt 100  Q
    |||||||||||||||||||||||||||||||  || ||| |||||||||| |||||||||||||||| |||||||||||    
T  31496943 ttccctattcctcccatcccacaaattcctatgacacgaccatcattaaccgagtccaaaagtaaaagcttttctaatt 31496865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 31019852 - 31019916
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaa 86  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||    
T  31019852 ttccctattccacccatcccacaaattcctacaacccgaacatcatcaaccgagtccaaaagtaa 31019916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 31029733 - 31029797
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaa 86  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||    
T  31029733 ttccctattccacccatcccacaaattcctacaacccgaacatcatcaaccgagtccaaaagtaa 31029797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 31489694 - 31489630
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaa 86  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||| || |||||||||||||||    
T  31489694 ttccctattccacccatcccacaaattcctacaacccgaacatcatcaatggagtccaaaagtaa 31489630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 384 - 519
Target Start/End: Original strand, 31163523 - 31163658
Alignment:
Q  384 agagctgccctccatctttgcaccatttgagagtcatgtttgaatgtttcctcatgttcagcaaaggctattttataatttccactttgctttcgcacat 483  Q
    |||||| ||||||||| ||| ||||| | ||||||||||||||||||||| | ||||| | ||||||||     ||||||   ||||| ||||||||| |    
T  31163523 agagcttccctccatcattgaaccatgtcagagtcatgtttgaatgtttctttatgtttaacaaaggcttcaccataattctgactttactttcgcacct 31163622  T
Q  484 cagaaggatcaacatcatagaaaacaggcagaacac 519  Q
    ||||| ||||||| |||||||||| |||||||||||    
T  31163623 cagaaagatcaacttcatagaaaataggcagaacac 31163658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 660 - 732
Target Start/End: Original strand, 31035053 - 31035121
Alignment:
Q  660 tccttactgataagctaagttgtacatctcactcaagtctcaactatatatttattaaaactcttactagtat 732  Q
    |||||||| |||||||||||||| |||||||    ||||||||||||||||||||||||||||||||| ||||    
T  31035053 tccttacttataagctaagttgtgcatctca----agtctcaactatatatttattaaaactcttactggtat 31035121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 31502112 - 31502035
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaaaaccttttctaat 99  Q
    ||||||||||| ||||||||||| ||||||||| || ||||||||| ||| |||||||| |||||||  |||||||||    
T  31502112 ttccctattccacccatcccacagattcctacagcttgaacatcatcaacagagtccaagagtaaaagtttttctaat 31502035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 76 - 196
Target Start/End: Original strand, 31034087 - 31034207
Alignment:
Q  76 tccaaaagtaaa-accttttctaattctcccattggagaattcatcccaaccaaatctttttggaacacttgaaaacttgtaacccaatatatttataat 174  Q
    |||||||||||| || |||||||||||| | ||  ||||||  |||||||| ||||||||| |||| ||||||||||  |||||||||| ||||||| ||    
T  31034087 tccaaaagtaaacactttttctaattcttctataagagaatcaatcccaactaaatctttt-ggaagacttgaaaaccggtaacccaatctatttattat 31034185  T
Q  175 ttgttcaatgatcttttcaatc 196  Q
     | |||||  ||||||||||||    
T  31034186 ctcttcaacaatcttttcaatc 31034207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 446 - 518
Target Start/End: Complemental strand, 31244579 - 31244507
Alignment:
Q  446 aaaggctattttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaaca 518  Q
    ||||||| ||| ||||| ||| |||||||||||||| ||||| ||||| ||||||||||||| ||| ||||||    
T  31244579 aaaggctttttcataatctccgctttgctttcgcacctcagatggatccacatcatagaaaataggtagaaca 31244507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 31245101 - 31245021
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaaaaccttttctaattct 102  Q
    ||||||||||| ||||| |||||||| ||||| ||||||||||||| | | ||||||| ||  |||| |||||||||||||    
T  31245101 ttccctattccacccattccacaaatccctaccactcgaacatcatcatctgagtccataatcaaaagcttttctaattct 31245021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 6e-36; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 465 - 634
Target Start/End: Original strand, 12781322 - 12781491
Alignment:
Q  465 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 564  Q
    |||||||||||| | || ||||||||||||||||||||||||||||| |||||  |||||| || |  || |||||| | ||| || | |||||||||||    
T  12781322 ccactttgcttttgtacctcagaaggatcaacatcatagaaaacaggaagaacgtgttttccatgttttttactgcaatgaaggatgtattccaattctc 12781421  T
Q  565 gcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgc 634  Q
    |||| ||||||||||||||||||||||| || ||||| || |||||| |||| |||||||||||||||||    
T  12781422 gcaaacaccaagttgaggaagcatagttcttagagaatacaacaatgtaaacctgagaggcttcaattgc 12781491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 465 - 634
Target Start/End: Original strand, 12782073 - 12782242
Alignment:
Q  465 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 564  Q
    ||||||||||||||||| |||||| ||||||||||||| |||||||||||||| ||||||| ||| | |  |||||| | ||| || | | | |||||||    
T  12782073 ccactttgctttcgcacctcagaaagatcaacatcataaaaaacaggcagaacgcgttttccatacaatacactgcagttaaggatgtatgctaattctc 12782172  T
Q  565 gcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgc 634  Q
    |||| ||||||||||| |||||||||||||| ||||| || ||||||||||| |||||| ||||||||||    
T  12782173 gcaaacaccaagttgaagaagcatagtttttagagaatacaacaatgaaaacctgagagccttcaattgc 12782242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 330 - 604
Target Start/End: Complemental strand, 33642259 - 33641985
Alignment:
Q  330 taaattacttacttatgacgcacatcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcaccatttgagagtcatgtttgaatg 429  Q
    |||||||||||||||| ||| | |||||||||||||| | |  | |||||| |||||||| |||||||||||  |||||||||| |||| |||| ||||     
T  33642259 taaattacttacttatcacgtagatcccaaccagagatactccccacttgttttagagcttccctccatcttgacaccatttgaaagtcttgttggaatc 33642160  T
Q  430 tttcctcatgttcagcaaaggctattttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaata 529  Q
    |||  |||||||   |||| |||     |||| |||||||||||||||| || |||||||||||||||||||| |||| ||| |||||| |||||    |    
T  33642159 tttgttcatgtttgacaaaagcttcccaataaattccactttgctttcgtacctcagaaggatcaacatcataaaaaataggaagaacatgtttttctaa 33642060  T
Q  530 tagttgactgcattcaagaatcttttccaattctcgcaagcaccaagttgaggaagcatagttttttgagaagac 604  Q
    |   | | ||||||||  |||||| || |||||| | | |||||| |||||||||||||||||| ||||||||||    
T  33642059 tccctcaatgcattcacaaatcttctctaattcttgaaggcaccatgttgaggaagcatagtttcttgagaagac 33641985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 333 - 622
Target Start/End: Complemental strand, 31566763 - 31566474
Alignment:
Q  333 attacttacttatgacgcacatcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcaccatttgagagtcatgtttgaatgttt 432  Q
    ||||||||||||| ||| | |||||||||| ||| | | || |||||| |||||||| | |||||||||  |||||| |||||||| |||  |||| |||    
T  31566763 attacttacttatcacgtagatcccaaccaaagatactcgccacttgttttagagcttctctccatcttgacaccatctgagagtcttgtcggaatcttt 31566664  T
Q  433 cctcatgttcagcaaaggctattttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatag 532  Q
      |||||||  ||||| |||     |||| | |||||||||||||| || ||||||||||||||||||||||||||| | |||||| |||||  | ||      
T  31566663 gttcatgtttggcaaaagcttcagaataaatcccactttgctttcgaacctcagaaggatcaacatcatagaaaacaagaagaacatgtttttcagattc 31566564  T
Q  533 ttgactgcattcaagaatcttttccaattctcgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgaga 622  Q
     | | ||||||||  |||||| || |||||| |||||||||| || ||||||||||| ||| ||||||||||  |||  |||||||||||    
T  31566563 ctcaatgcattcacaaatcttctctaattcttgcaagcaccatgtcgaggaagcataatttcttgagaagacggcaacaaaaacatgaga 31566474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 457 - 603
Target Start/End: Original strand, 33060120 - 33060266
Alignment:
Q  457 tataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttc 556  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||   |    | | ||||||||   ||||||||    
T  33060120 tataaattccactttgcttccgcacctcagaaggatcaacatcatagaaaacaggaagaacatgttttcccgaccccttaatgcattcacatatcttttc 33060219  T
Q  557 caattctcgcaagcaccaagttgaggaagcatagttttttgagaaga 603  Q
     |||||| |||||||||| ||||||||||||||||| ||||||||||    
T  33060220 taattcttgcaagcaccacgttgaggaagcatagttctttgagaaga 33060266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 465 - 634
Target Start/End: Original strand, 12785512 - 12785681
Alignment:
Q  465 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 564  Q
    |||||||||||| | || |||||||||||||||||||| |||| ||| ||||   |||||| ||||  || |||||| | ||| || | |||||||||||    
T  12785512 ccactttgcttttgtacctcagaaggatcaacatcataaaaaataggaagaatgtgttttccatattttttactgcaatgaaggatgtattccaattctc 12785611  T
Q  565 gcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgc 634  Q
    |||| ||||||||||| ||||||||||| || ||||| || |||||| |||  |||||||||||||||||    
T  12785612 gcaaacaccaagttgaagaagcatagttcttagagaatacaacaatgtaaagctgagaggcttcaattgc 12785681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 330 - 601
Target Start/End: Original strand, 33288013 - 33288284
Alignment:
Q  330 taaattacttacttatgacgcacatcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcaccatttgagagtcatgtttgaatg 429  Q
    |||||||||||||||| ||  | ||||||||||| || | |  | |||||| |||| ||| |||||||||||  |||||| |||||||| |||| |||||    
T  33288013 taaattacttacttatcacatagatcccaaccagcgatactccccacttgttttagggcttccctccatcttgacaccatctgagagtcttgttggaatg 33288112  T
Q  430 tttcctcatgttcagcaaaggctattttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaata 529  Q
    |||  ||||||   | |||||||     |||| | ||||||||||||||||| |||||||||||||||||||||||||| || ||||   ||||||   |    
T  33288113 tttgttcatgtatggtaaaggcttcaccataaatcccactttgctttcgcacctcagaaggatcaacatcatagaaaactggaagaatgtgttttcttga 33288212  T
Q  530 tagttgactgcattcaagaatcttttccaattctcgcaagcaccaagttgaggaagcatagttttttgagaa 601  Q
    ||  |||   ||||||   |||||||| |||||  |||||||||| |||||||||||||||||| |||||||    
T  33288213 tacatgaacacattcacatatcttttctaattcctgcaagcaccatgttgaggaagcatagtttcttgagaa 33288284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 113 - 263
Target Start/End: Original strand, 12785831 - 12785977
Alignment:
Q  113 aattcatcccaaccaaatctttttggaacacttgaaaacttgtaacccaatatatttataatttgttcaatgatcttttcaatctctgcaaattgtggcc 212  Q
    |||| ||| |||||||||||||| | |  ||||||||||||| ||||||  |||||||||   ||||||||||| ||||||| ||| |||  ||||||||    
T  12785831 aattaatctcaaccaaatctttt-gtacgacttgaaaacttgcaacccagaatatttata---tgttcaatgatgttttcaagctccgcatgttgtggcc 12785926  T
Q  213 tgcaagtttaaaacagttaaccaacaacaccaaattacaacataccaaaac 263  Q
    ||||||||||||||| |||||||||||||| |||| |  ||||||||||||    
T  12785927 tgcaagtttaaaacaattaaccaacaacacaaaatcatcacataccaaaac 12785977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 330 - 524
Target Start/End: Original strand, 33390511 - 33390705
Alignment:
Q  330 taaattacttacttatgacgcacatcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcaccatttgagagtcatgtttgaatg 429  Q
    |||||| ||||||||| ||  | |||||||||||||| | |  | |||||| |||||||| | |||||||||  |||||| |||||||  |||| ||||     
T  33390511 taaatttcttacttatcacatagatcccaaccagagatactccccacttgttttagagcttctctccatcttgacaccatctgagagttttgttggaatc 33390610  T
Q  430 tttcctcatgttcagcaaaggctattttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgtttt 524  Q
    |||  |||||||   |||| ||| | | |||| |||||||||||||||| || |||||||||||||||||||| |||||||| |||||| |||||    
T  33390611 tttgttcatgtttgacaaaagctttatcataaattccactttgctttcgaacctcagaaggatcaacatcataaaaaacaggaagaacaagtttt 33390705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 466 - 603
Target Start/End: Original strand, 33361072 - 33361209
Alignment:
Q  466 cactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctcg 565  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||| |||||| ||||||   ||   | | ||||||||   |||||||| |||||| |    
T  33361072 cactttgcttccgcacctcagaaggatcaacatcatagaaaacaggaagaacatgttttcctgatcccttaatgcattcacatatcttttctaattcttg 33361171  T
Q  566 caagcaccaagttgaggaagcatagttttttgagaaga 603  Q
    ||| ||||| |||||||||||||||||| |||| ||||    
T  33361172 caaacaccatgttgaggaagcatagtttcttgaaaaga 33361209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 465 - 622
Target Start/End: Original strand, 33265455 - 33265612
Alignment:
Q  465 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 564  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| || |||||| ||||||   ||   | |  |||||||   |||||||| ||||||     
T  33265455 ccactttgctttctcacatcagagggatcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattctt 33265554  T
Q  565 gcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgaga 622  Q
    | || ||||| |||||||||||||||||| |||| |||||| |||  ||||| |||||    
T  33265555 gtaaacaccatgttgaggaagcatagtttattgaaaagaccgcaacaaaaacttgaga 33265612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 465 - 622
Target Start/End: Original strand, 33274599 - 33274756
Alignment:
Q  465 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 564  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| || |||||| ||||||   ||   | |  |||||||   |||||||| ||||||     
T  33274599 ccactttgctttctcacatcagagggatcaacatcatagaaaactggaagaacatgttttcctgatcccttaacgcattcacatatcttttctaattctt 33274698  T
Q  565 gcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgaga 622  Q
    | || ||||| |||||||||||||||||| |||| |||||| |||  ||||| |||||    
T  33274699 gtaaacaccatgttgaggaagcatagtttattgaaaagaccgcaacaaaaacttgaga 33274756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 331 - 604
Target Start/End: Original strand, 33306925 - 33307198
Alignment:
Q  331 aaattacttacttatgacgcacatcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcaccatttgagagtcatgtttgaatgt 430  Q
    ||||||||||||||| ||| | |||||||||||||| | |  | || ||| |||||||| |||||||||||  |||||| | | |||| |||| |||| |    
T  33306925 aaattacttacttatcacgtagatcccaaccagagatactccccacatgttttagagcttccctccatcttgacaccatctcaaagtcttgttggaatct 33307024  T
Q  431 ttcctcatgttcagcaaaggctattttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatat 530  Q
    ||  |||||||   ||||||||     |||| | |||||||||||||| ||  ||||||||||||||||||| |||||||| |||| | ||||||   ||    
T  33307025 ttgttcatgtttgacaaaggcttcacaataaatcccactttgctttcgaaccacagaaggatcaacatcataaaaaacaggaagaatatgttttctggat 33307124  T
Q  531 agttgactgcattcaagaatcttttccaattctcgcaagcaccaagttgaggaagcatagttttttgagaagac 604  Q
       |||  ||||| |   ||||| || |||||| ||| |||||| |||||||||||||||||  ||||||||||    
T  33307125 ctctgaacgcatttacatatcttctctaattcttgcaggcaccatgttgaggaagcatagttccttgagaagac 33307198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 465 - 525
Target Start/End: Original strand, 9169431 - 9169491
Alignment:
Q  465 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttc 525  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| | |||||| ||||||    
T  9169431 ccactttgctttcgcacctcagaaggatcaacatcatagaaaacaagaagaacatgttttc 9169491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Complemental strand, 13608693 - 13608640
Alignment:
Q  353 atcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcac 406  Q
    ||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  13608693 atcccaaccagagagattggctacttgtgttagggctcccctccatctttgcac 13608640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 31560825 - 31560712
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaaaaccttttctaattctcccattggagaattcatcc 121  Q
    ||||||||||||||||| ||||||||||||| ||| |||||| ||| | | ||||||||||| |||   |||| |||| || | || |||||||| ||||    
T  31560825 ttccctattcctcccattccacaaattcctataacacgaacaccatcatccgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcc 31560726  T
Q  122 caaccaaatctttt 135  Q
    |||| |||||||||    
T  31560725 caactaaatctttt 31560712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 465 - 516
Target Start/End: Original strand, 12786252 - 12786303
Alignment:
Q  465 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaa 516  Q
    ||||||||||||||||| |||||||||||||||||||| |||| ||||||||    
T  12786252 ccactttgctttcgcacctcagaaggatcaacatcataaaaaataggcagaa 12786303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 465 - 524
Target Start/End: Original strand, 33403184 - 33403243
Alignment:
Q  465 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgtttt 524  Q
    |||||||||||||| || ||||||||||||||||||||||||||||| | |||| |||||    
T  33403184 ccactttgctttcgaacctcagaaggatcaacatcatagaaaacaggaataacatgtttt 33403243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 9168838 - 9168951
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaaaaccttttctaattctcccattggagaattcatcc 121  Q
    ||||||||||||||||| ||||||||||||| | | |||||| ||| ||  ||||||||||| |||   |||| |||| || | || |||||||| ||||    
T  9168838 ttccctattcctcccattccacaaattcctatagcacgaacaccatcaattgagtccaaaagcaaatgattttgtaatgcttctataggagaattaatcc 9168937  T
Q  122 caaccaaatctttt 135  Q
    |||| |||||||||    
T  9168938 caactaaatctttt 9168951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 33642618 - 33642427
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaaaaccttttctaattctcccattggagaattcatcc 121  Q
    ||||||||||||||||| ||||||||||||| | | |||||| ||| ||| ||||||||||| |||   |||| |||| ||   || |||||||  ||||    
T  33642618 ttccctattcctcccattccacaaattcctatagcacgaacaccatcaactgagtccaaaagcaaatgattttgtaatgcttttataggagaatcaatcc 33642519  T
Q  122 caaccaaatctttttggaacacttgaaaacttgtaacccaatatatttataatttgttcaatgatcttttcaatctctgcaaattgtggcctg 214  Q
    |||| ||||| ||||| ||||||| || ||||| |  | |||||||| || || | || ||  ||||||| ||||||||||  ||||||||||    
T  33642518 caactaaatc-ttttgaaacacttaaagacttgcactctaatatattgattatcttttgaacaatctttttaatctctgcagcttgtggcctg 33642427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 465 - 638
Target Start/End: Original strand, 33412491 - 33412664
Alignment:
Q  465 ccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaatatagttgactgcattcaagaatcttttccaattctc 564  Q
    ||||||||||| ||||| ||||||||||||| |||||| |||||||| |||||  |||||  |  |   |||   ||||||   |||||||| ||||||     
T  33412491 ccactttgcttccgcacctcagaaggatcaatatcataaaaaacaggaagaacgtgtttttcaggtccctgaacacattcacagatcttttctaattctt 33412590  T
Q  565 gcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgagaggcttcaattgcacga 638  Q
    ||| |||||| |||||||||||||||||  |||| |||||  | | |||||| |||||  |||| |||||||||    
T  33412591 gcaggcaccatgttgaggaagcatagttccttgaaaagactgcgacgaaaacctgagatccttcgattgcacga 33412664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 263
Target Start/End: Original strand, 12781641 - 12781787
Alignment:
Q  113 aattcatcccaaccaaatctttttggaacacttgaaaacttgtaacccaatatatttataatttgttcaatgatcttttcaatctctgcaaattgtggcc 212  Q
    |||| ||| |||||||||||||| | |  ||||| ||||||| ||||||| |||||||||   |||||||| || ||||||| ||| |||   |||||||    
T  12781641 aattaatctcaaccaaatctttt-gtacgacttggaaacttgcaacccaaaatatttata---tgttcaattatgttttcaagctccgcatgatgtggcc 12781736  T
Q  213 tgcaagtttaaaacagttaaccaacaacaccaaattacaacataccaaaac 263  Q
    ||||  |||| |||| ||||||| |||||| |||| |  ||||||||||||    
T  12781737 tgcatatttataacaattaaccatcaacacgaaatcatcacataccaaaac 12781787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 13609149 - 13609093
Alignment:
Q  25 cctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaa 81  Q
    |||||||| ||||| |||||||| ||||||||||||||||||| | | |||||||||    
T  13609149 cctattccgcccattccacaaatccctacaactcgaacatcatcatctgagtccaaa 13609093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 33059624 - 33059688
Alignment:
Q  19 gttttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaag 83  Q
    |||||||||||||||||||| ||||||||||||| | | |||||| ||| ||| |||| ||||||    
T  33059624 gttttccctattcctcccattccacaaattcctatagcacgaacaccatcaactgagttcaaaag 33059688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 33273856 - 33273921
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaaa 87  Q
    ||||||||||||||||| ||||||||||||| | | ||||||   | ||| |||||||||||||||    
T  33273856 ttccctattcctcccattccacaaattcctatagcacgaacactgtcaaccgagtccaaaagtaaa 33273921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 33287603 - 33287636
Alignment:
Q  19 gttttccctattcctcccatcccacaaattccta 52  Q
    |||||||||||||||||||| |||||||||||||    
T  33287603 gttttccctattcctcccattccacaaattccta 33287636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 33390136 - 33390197
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaag 83  Q
    ||||||||||||||||| ||||||||||||| | |  ||||| ||| ||| |||||||||||    
T  33390136 ttccctattcctcccattccacaaattcctatagcatgaacaccatcaactgagtccaaaag 33390197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 330 - 622
Target Start/End: Complemental strand, 17438331 - 17438039
Alignment:
Q  330 taaattacttacttatgacgcacatcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcaccatttgagagtcatgtttgaatg 429  Q
    |||||||||||||||| ||| | ||||||||||| || | |  | |||||  |||||||| |||||||||||  |||| | |||  ||| |||| ||||     
T  17438331 taaattacttacttatcacgtagatcccaaccagcgatactccccacttgctttagagcttccctccatcttgacaccttctgaaggtcttgttggaatc 17438232  T
Q  430 tttcctcatgttcagcaaaggctattttataatttccactttgctttcgcacatcagaaggatcaacatcatagaaaacaggcagaacacgttttcaata 529  Q
    |||  |||||||   |||| |||   | |||| | ||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||        
T  17438231 tttgttcatgtttgacaaaagcttcatgataaatcccactttgctttcgcacctcagaaggatcaacatcatagaaaacaggaagaacatgttttcctgg 17438132  T
Q  530 tagttgactgcattcaagaatcttttccaattctcgcaagcaccaagttgaggaagcatagttttttgagaagaccacaatgaaaacatgaga 622  Q
     |  |||  |||||||   |||||||| ||||||  ||| ||||| |||||||||||||||| | ||||||| ||| |||  ||||| |||||    
T  17438131 cacctgaacgcattcacatatcttttctaattcttccaaacaccatgttgaggaagcatagtatcttgagaaaaccgcaacaaaaacctgaga 17438039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 17438844 - 17438646
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaaaaccttttctaattctcccattggagaattcatcc 121  Q
    |||||||||||||||||||| |||||||||| | | |||||| ||| ||| |||||||||||||||   |||| |||| || | ||  ||||||| ||||    
T  17438844 ttccctattcctcccatcccccaaattcctatagcacgaacaccatcaaccgagtccaaaagtaaatgattttttaatgcttctatacgagaatttatcc 17438745  T
Q  122 caaccaaatctttttggaacacttgaaaacttgtaacccaatatatttataatttgttcaatgatcttttcaatctctgcaaattgtggcctgcaagttt 221  Q
    |||| ||||| ||||| |  || |||| | ||| |  |||||||||| || || | || ||  ||||||| |||||||||| ||||||||||| ||||||    
T  17438744 caactaaatc-ttttgaattacatgaagatttgcattccaatatattcattatcttttgaacaatctttttaatctctgcacattgtggcctgaaagttt 17438646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 353 - 406
Target Start/End: Original strand, 6472955 - 6473008
Alignment:
Q  353 atcccaaccagagagattggcaacttgtgttagagctgccctccatctttgcac 406  Q
    ||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  6472955 atcccaaccagagagattggctacttgtgttagggctcccctccatctttgcac 6473008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 601
Target Start/End: Original strand, 6473150 - 6473203
Alignment:
Q  548 aatcttttccaattctcgcaagcaccaagttgaggaagcatagttttttgagaa 601  Q
    ||| ||| |||||||| |||||||||| || || ||||||||||||||||||||    
T  6473150 aatatttaccaattcttgcaagcaccatgtggaagaagcatagttttttgagaa 6473203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1749 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 63 - 127
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaa 86  Q
    |||||||||||||||||||| |||||||||| ||| |||||| ||| ||| || | |||||||||    
T  63 ttccctattcctcccatcccccaaattcctataacacgaacaccatcaaccgaattcaaaagtaa 127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 8824 - 8888
Alignment:
Q  22 ttccctattcctcccatcccacaaattcctacaactcgaacatcattaacggagtccaaaagtaa 86  Q
    |||||||||||||||||||| |||||||||| ||| |||||| ||| ||| || | |||||||||    
T  8824 ttccctattcctcccatcccccaaattcctataacacgaacaccatcaaccgaattcaaaagtaa 8888  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 513
Target Start/End: Original strand, 16466056 - 16466089
Alignment:
Q  480 acatcagaaggatcaacatcatagaaaacaggca 513  Q
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T  16466056 acatcagaaggatcaacgtcatagaaaacaggca 16466089  T

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