View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_10 (Length: 504)
Name: NF14034_low_10
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_10 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0150 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 15 - 504
Target Start/End: Original strand, 17546538 - 17547027
Alignment:
| Q |
15 |
atcaaaagggaagtaatcctgacgttttcaagattaaataaaagtccttccaattattggccaaatatcaatactccttcttgatgaaaacactcgtcaa |
114 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17546538 |
atcaaaagggaagtaatcctaacgttttcaagattaaataaaagtccttccaattattggccaaatatcaatactccttcttgatgaaaacactcgtcaa |
17546637 |
T |
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| Q |
115 |
taccatctttgattgcagagaagccttaagcaactttgaaccctgttagaaccnnnnnnncaacatatcattcgagtgattaagttcaatactcaaagca |
214 |
Q |
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| T |
17546638 |
taccatctttgattgcagagaagccttaagcaactttgaaccctgttagaaccaaaaaaacaacatatcattcgagcgattaagttcaatactcaaagca |
17546737 |
T |
|
| Q |
215 |
acattataaaattaaggtgtaaaaggtaacaaataatttaattcacacaagaataatgcacttgcctcttcaactccaaatttaactaccatttcttgta |
314 |
Q |
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| T |
17546738 |
acattataaaattaaggtgtaaaaggtaacaaataatttaattcacacaagaataatgcacttgcctcttcaactccaaattcaactaccatttcttgta |
17546837 |
T |
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| Q |
315 |
aggtacccatctctttgatgttgaacttgttaagtatggtaatgcctgataaggtcggcatgggctgaattgacaaatcatccatgaccatgaaagtcac |
414 |
Q |
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| T |
17546838 |
aggtacccatctctttgatgttgaacttgttaagtatggtaatgcctgataaggtcggcatgggctgaattgacaaatcatccatgaccatgaaagtcac |
17546937 |
T |
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| Q |
415 |
aacatctttcgcaaaaccattattaattgaaaggtactcctcatcaaacttctttccaacacaacgggtttctcggttcatcggtttctt |
504 |
Q |
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| T |
17546938 |
aacatctttcacaaaaccattattaattgaaaggtactcctcatcaaacttctttccaacacaactggtttctcggttcatcggtttctt |
17547027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 15 - 504
Target Start/End: Original strand, 17016101 - 17016590
Alignment:
| Q |
15 |
atcaaaagggaagtaatcctgacgttttcaagattaaataaaagtccttccaattattggccaaatatcaatactccttcttgatgaaaacactcgtcaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17016101 |
atcaaaagggaagtaatcctgacgttttcaagattaaatagaagtcattcaaattattggccaaatatcaatactccttcttgatgaaaacactcgtcaa |
17016200 |
T |
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| Q |
115 |
taccatctttgattgcagagaagccttaagcaactttgaaccctgttagaaccnnnnnnncaacatatcattcgagtgattaagttcaatactcaaagca |
214 |
Q |
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| T |
17016201 |
taccatctttgattgcagagaagccttaagcaactttgaaccctgttagaaacaaaaaaacaacatatcattcgagcgattaagttcaatactcaaagca |
17016300 |
T |
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| Q |
215 |
acattataaaattaaggtgtaaaaggtaacaaataatttaattcacacaagaataatgcacttgcctcttcaactccaaatttaactaccatttcttgta |
314 |
Q |
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| T |
17016301 |
acattataaaattaaggtgtaaaacgtaacaaataatttaattcacacaagaataatgcacttgcctcttcaactccaaattcaactaccatttcttgta |
17016400 |
T |
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| Q |
315 |
aggtacccatctctttgatgttgaacttgttaagtatggtaatgcctgataaggtcggcatgggctgaattgacaaatcatccatgaccatgaaagtcac |
414 |
Q |
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| T |
17016401 |
aggtacccatctctttgatgttgaacttgttaagtatggtaatgcctgataaggtcggcatgggctgaattgacaaatcatccatgaccatgaaagtcac |
17016500 |
T |
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| Q |
415 |
aacatctttcgcaaaaccattattaattgaaaggtactcctcatcaaacttctttccaacacaacgggtttctcggttcatcggtttctt |
504 |
Q |
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| T |
17016501 |
aacatctttcacaaaaccattattaattgaaaggtactcctcatcaaacttctttccaacacaactggtttctcggttcatcggtttctt |
17016590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 17523053 - 17522994
Alignment:
| Q |
91 |
cttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagcaactt |
150 |
Q |
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| T |
17523053 |
cttcttgagaaaaacacttgtcaagaccatcttggattgcagagaagccttcagcaactt |
17522994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0150
Description:
Target: scaffold0150; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 419 - 504
Target Start/End: Complemental strand, 18577 - 18492
Alignment:
| Q |
419 |
tctttcgcaaaaccattattaattgaaaggtactcctcatcaaacttctttccaacacaacgggtttctcggttcatcggtttctt |
504 |
Q |
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| T |
18577 |
tctttcacaaaaccattattaattgaaaggtactcctcatcaaacttctttccaacacaacgggtttctcggttcatcggtttctt |
18492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0150; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 475
Target Start/End: Original strand, 8640 - 8726
Alignment:
| Q |
389 |
aaatcatccatgaccatgaaagtcacaacatctttcgcaaaaccattattaattgaaaggtactcctcatcaaacttctttccaaca |
475 |
Q |
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| T |
8640 |
aaatcgtccattaccataaatgtcacaacatctttcacaaaaccattcttaatagaaacgttatcttcaacaaccttttttccaaca |
8726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 52145000 - 52145071
Alignment:
| Q |
79 |
atatcaatactccttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagcaactt |
150 |
Q |
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| T |
52145000 |
atatcaattttccttcttgaggaaaacacttgtcaataccattttggattgcagagaagcctttagcaactt |
52145071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 146
Target Start/End: Original strand, 52152460 - 52152517
Alignment:
| Q |
89 |
tccttcttgatgaaaacactcgtcaataccatctttgattgcagagaagccttaagca |
146 |
Q |
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| T |
52152460 |
tccttcttgatgaaaacactagttaaaaccatctttgtctgcagagaagccttcagca |
52152517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 52133430 - 52133476
Alignment:
| Q |
389 |
aaatcatccatgaccatgaaagtcacaacatctttcgcaaaaccatt |
435 |
Q |
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| T |
52133430 |
aaatcatccatcaccataaatgtcacaacatctttcacaaaaccatt |
52133476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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