View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_11 (Length: 491)
Name: NF14034_low_11
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 37 - 485
Target Start/End: Original strand, 33581514 - 33581972
Alignment:
| Q |
37 |
acacacacactggagcatacaactatcatttacaatctatagctct-cagt---agcagacctcagttaaaaagcgtggcagttatggttagttaatgtg |
132 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33581514 |
acacacacactagagcatacaactatcatttacaatctatagctctactgtgctagcagacctcagttaaaaagcgtggcagttatggttagttaatgtg |
33581613 |
T |
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| Q |
133 |
tnnnnnnnnnnnnnnnnn----gattaggaagggacannnnnnnataaacgggagatgttagtatttagttgttaggctagtatttttctccctcaccat |
228 |
Q |
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| T |
33581614 |
tgtgtgtgagagagagagaggggattaggaagggacatttttttataaaagggcgatgttagtatttagttgttaggctagtatttttctccctcaccat |
33581713 |
T |
|
| Q |
229 |
ggtttgaaccagctcctccaattccaacaagatgataacacttcaactcaaaacaagacggtatagccttcaacaataattactacnnnnnnnnnnnnnn |
328 |
Q |
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| T |
33581714 |
ggtttgaaccaggtcctccaattccaacaagatgataacacttcaactcaaaacaagacggtatagccttcaacaataattactacaaaaaaaaaaaaaa |
33581813 |
T |
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| Q |
329 |
nnn--catcattaaacaagcaacaaattgttttggaacaagggtttgaggaggaagatactaacacagcgtaatgggaatgatgaagaaggattgtggcg |
426 |
Q |
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| T |
33581814 |
aaaaacatcattaaacaagcaacaaattgttttggaacaagggtttgaggaggaagatactaacacagcgtaatgggaatgatgaagaaggattgtggcg |
33581913 |
T |
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| Q |
427 |
attcgaagacgagttttgacttccaccattgcttctagacattttactgcctttgcttc |
485 |
Q |
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| T |
33581914 |
attcgaagacgagttttgacttccaccattgcttctagacattttactgcctttgcttc |
33581972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 393 - 449
Target Start/End: Original strand, 32359188 - 32359244
Alignment:
| Q |
393 |
agcgtaatgggaatgatgaagaaggattgtggcgattcgaagacgagttttgacttc |
449 |
Q |
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| T |
32359188 |
agcgttatgagaatgatgaagaaggattgtggcgatacgaagacgagttttgacttc |
32359244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 270 - 314
Target Start/End: Original strand, 32359038 - 32359082
Alignment:
| Q |
270 |
ttcaactcaaaacaagacggtatagccttcaacaataattactac |
314 |
Q |
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| T |
32359038 |
ttcaactcaaaacaagacggtatagccttcaacaacaattgctac |
32359082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 483
Target Start/End: Original strand, 32359279 - 32359308
Alignment:
| Q |
454 |
attgcttctagacattttactgcctttgct |
483 |
Q |
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| T |
32359279 |
attgcttctagacattttactgcctttgct |
32359308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 449
Target Start/End: Original strand, 17923802 - 17923851
Alignment:
| Q |
400 |
tgggaatgatgaagaaggattgtggcgattcgaagacgagttttgacttc |
449 |
Q |
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| T |
17923802 |
tgggaatggtgaagaaggatagtggcaatacgaagacgagttttgacttc |
17923851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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