View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_low_13 (Length: 475)

Name: NF14034_low_13
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_low_13
NF14034_low_13
[»] chr5 (28 HSPs)
chr5 (1-90)||(34371813-34371902)
chr5 (1-90)||(8641891-8641980)
chr5 (2-90)||(15512869-15512957)
chr5 (1-88)||(3886457-3886544)
chr5 (1-88)||(3886913-3887000)
chr5 (1-90)||(189269-189358)
chr5 (1-90)||(2474150-2474239)
chr5 (3-90)||(2474606-2474693)
chr5 (1-90)||(2194005-2194094)
chr5 (1-90)||(34867979-34868068)
chr5 (1-90)||(42788502-42788591)
chr5 (28-90)||(17445338-17445400)
chr5 (5-87)||(34372272-34372354)
chr5 (1-68)||(21883941-21884008)
chr5 (21-90)||(20039352-20039420)
chr5 (9-86)||(30684875-30684952)
chr5 (1-86)||(30720116-30720201)
chr5 (39-90)||(187759-187810)
chr5 (1-90)||(22557170-22557260)
chr5 (13-82)||(24182114-24182183)
chr5 (37-89)||(1880278-1880330)
chr5 (28-90)||(22556737-22556800)
chr5 (21-87)||(29679983-29680049)
chr5 (37-90)||(1822107-1822160)
chr5 (37-90)||(10927295-10927348)
chr5 (28-83)||(8391205-8391260)
chr5 (28-82)||(18750079-18750133)
chr5 (37-78)||(8366678-8366719)
[»] chr2 (24 HSPs)
chr2 (1-90)||(30966435-30966524)
chr2 (1-90)||(30966891-30966980)
chr2 (1-90)||(32377763-32377852)
chr2 (4-90)||(32377575-32377661)
chr2 (1-90)||(33175157-33175246)
chr2 (1-90)||(5399673-5399762)
chr2 (1-90)||(25337853-25337942)
chr2 (29-90)||(29259504-29259565)
chr2 (1-89)||(24818527-24818615)
chr2 (37-90)||(1912725-1912778)
chr2 (9-86)||(30963127-30963204)
chr2 (1-90)||(33771202-33771291)
chr2 (1-67)||(29804871-29804937)
chr2 (28-89)||(16379139-16379200)
chr2 (37-88)||(16379596-16379647)
chr2 (7-86)||(30961745-30961824)
chr2 (1-82)||(83226-83307)
chr2 (23-83)||(30963598-30963658)
chr2 (40-90)||(15620099-15620149)
chr2 (21-87)||(15639938-15640004)
chr2 (21-83)||(20502172-20502234)
chr2 (21-89)||(25433932-25434000)
chr2 (37-85)||(36924373-36924421)
chr2 (38-83)||(8181254-8181299)
[»] chr1 (27 HSPs)
chr1 (1-90)||(20054392-20054481)
chr1 (1-90)||(20054848-20054937)
chr1 (1-90)||(20055304-20055393)
chr1 (1-90)||(20055760-20055849)
chr1 (1-90)||(20056216-20056305)
chr1 (1-90)||(20056672-20056761)
chr1 (1-90)||(20057119-20057208)
chr1 (1-90)||(20057575-20057664)
chr1 (1-90)||(20845517-20845606)
chr1 (1-90)||(50002931-50003020)
chr1 (4-90)||(20060199-20060285)
chr1 (1-90)||(38341107-38341196)
chr1 (1-89)||(20053936-20054024)
chr1 (1-84)||(35759920-35760003)
chr1 (1-87)||(16451789-16451875)
chr1 (1-87)||(16460942-16461028)
chr1 (4-90)||(35759467-35759553)
chr1 (1-90)||(52250407-52250496)
chr1 (1-90)||(46693591-46693680)
chr1 (13-90)||(50002575-50002652)
chr1 (1-90)||(52250744-52250833)
chr1 (1-90)||(52251081-52251170)
chr1 (3-90)||(51372732-51372819)
chr1 (1-90)||(31822975-31823064)
chr1 (1-78)||(49996536-49996613)
chr1 (21-90)||(43056941-43057010)
chr1 (2-68)||(28181350-28181416)
[»] scaffold0322 (1 HSPs)
scaffold0322 (1-90)||(19167-19256)
[»] chr8 (31 HSPs)
chr8 (1-90)||(32292142-32292231)
chr8 (1-88)||(22548405-22548492)
chr8 (1-88)||(22548851-22548938)
chr8 (1-90)||(22026580-22026670)
chr8 (1-90)||(21315966-21316055)
chr8 (1-90)||(34308335-34308424)
chr8 (1-90)||(34308791-34308880)
chr8 (1-89)||(27022195-27022283)
chr8 (1-90)||(12827110-12827199)
chr8 (1-90)||(17103283-17103372)
chr8 (1-90)||(31283508-31283597)
chr8 (7-87)||(25147740-25147819)
chr8 (28-88)||(12100893-12100953)
chr8 (12-88)||(41658972-41659048)
chr8 (28-90)||(30527365-30527427)
chr8 (37-90)||(8080234-8080287)
chr8 (39-90)||(6463438-6463489)
chr8 (28-90)||(2044259-2044321)
chr8 (9-83)||(25148174-25148248)
chr8 (1-90)||(10844471-10844560)
chr8 (37-90)||(32292598-32292651)
chr8 (190-250)||(9883634-9883694)
chr8 (7-78)||(9251098-9251169)
chr8 (20-86)||(25307969-25308035)
chr8 (28-90)||(27926099-27926161)
chr8 (221-290)||(17290583-17290652)
chr8 (1-81)||(28453548-28453628)
chr8 (28-83)||(34688044-34688099)
chr8 (1-79)||(6466468-6466546)
chr8 (39-89)||(41913172-41913222)
chr8 (21-82)||(15818892-15818953)
[»] chr7 (34 HSPs)
chr7 (1-90)||(2941613-2941702)
chr7 (4-90)||(9125160-9125246)
chr7 (1-90)||(43233158-43233247)
chr7 (4-90)||(18833487-18833573)
chr7 (1-90)||(2193457-2193546)
chr7 (1-90)||(7646334-7646423)
chr7 (1-86)||(28495475-28495560)
chr7 (9-90)||(28496055-28496136)
chr7 (1-90)||(36422452-36422541)
chr7 (14-90)||(42515745-42515821)
chr7 (4-90)||(13122363-13122450)
chr7 (1-90)||(2189345-2189434)
chr7 (4-88)||(13124994-13125079)
chr7 (1-81)||(6747462-6747542)
chr7 (1-90)||(6718931-6719020)
chr7 (21-90)||(6747952-6748021)
chr7 (21-90)||(42515293-42515362)
chr7 (180-235)||(3312654-3312709)
chr7 (1-87)||(7646619-7646705)
chr7 (28-90)||(34405474-34405536)
chr7 (21-90)||(29038896-29038965)
chr7 (14-78)||(26419104-26419168)
chr7 (28-87)||(2611542-2611601)
chr7 (180-235)||(3310953-3311008)
chr7 (34-88)||(43776179-43776233)
chr7 (1-55)||(43776321-43776375)
chr7 (28-89)||(3305231-3305292)
chr7 (37-86)||(29357348-29357397)
chr7 (37-90)||(35474013-35474066)
chr7 (30-82)||(7461267-7461319)
chr7 (28-90)||(22529118-22529180)
chr7 (28-82)||(36422591-36422645)
chr7 (4-41)||(18833633-18833670)
chr7 (180-224)||(13695880-13695924)
[»] chr6 (25 HSPs)
chr6 (1-90)||(17027387-17027476)
chr6 (3-90)||(9352263-9352350)
chr6 (4-90)||(20850522-20850608)
chr6 (1-90)||(7912079-7912168)
chr6 (1-88)||(2681076-2681163)
chr6 (1-86)||(23986173-23986258)
chr6 (4-87)||(13191372-13191455)
chr6 (7-88)||(13492535-13492617)
chr6 (1-90)||(20896543-20896633)
chr6 (1-88)||(23776643-23776730)
chr6 (1-87)||(7912514-7912600)
chr6 (1-89)||(28780312-28780400)
chr6 (21-90)||(2891170-2891239)
chr6 (4-90)||(13492990-13493077)
chr6 (1-82)||(9440713-9440794)
chr6 (1-86)||(15929344-15929429)
chr6 (28-87)||(2890722-2890781)
chr6 (37-88)||(20126074-20126125)
chr6 (28-90)||(17730992-17731054)
chr6 (21-83)||(31415965-31416026)
chr6 (21-90)||(3652724-3652793)
chr6 (37-90)||(11062030-11062083)
chr6 (1-56)||(6331224-6331279)
chr6 (6-86)||(28583169-28583249)
chr6 (58-90)||(33774915-33774947)
[»] scaffold0557 (1 HSPs)
scaffold0557 (2-90)||(2297-2385)
[»] scaffold0389 (1 HSPs)
scaffold0389 (1-88)||(13389-13476)
[»] scaffold0243 (1 HSPs)
scaffold0243 (1-90)||(1421-1510)
[»] chr4 (35 HSPs)
chr4 (1-90)||(24629286-24629375)
chr4 (7-90)||(15268029-15268112)
chr4 (11-90)||(35871828-35871907)
chr4 (9-90)||(4127276-4127357)
chr4 (1-82)||(13266295-13266376)
chr4 (1-90)||(35477861-35477950)
chr4 (1-90)||(50398844-50398933)
chr4 (21-88)||(1645619-1645686)
chr4 (1-90)||(7678472-7678561)
chr4 (21-89)||(3169408-3169476)
chr4 (4-88)||(23350136-23350220)
chr4 (8-78)||(14571545-14571615)
chr4 (4-86)||(14572007-14572089)
chr4 (4-90)||(49998837-49998923)
chr4 (1-90)||(4127744-4127828)
chr4 (1-90)||(50398388-50398477)
chr4 (26-86)||(8467688-8467748)
chr4 (28-90)||(23943119-23943181)
chr4 (21-90)||(7381468-7381537)
chr4 (11-86)||(27578317-27578392)
chr4 (5-91)||(31817707-31817792)
chr4 (28-90)||(44470752-44470814)
chr4 (21-89)||(4414257-4414325)
chr4 (37-87)||(23942675-23942725)
chr4 (1-59)||(50399336-50399394)
chr4 (1-70)||(13265857-13265926)
chr4 (1-83)||(27578139-27578218)
chr4 (34-86)||(31817021-31817073)
chr4 (180-235)||(14645765-14645820)
chr4 (41-87)||(9423748-9423794)
chr4 (28-90)||(21067483-21067545)
chr4 (28-90)||(44471202-44471264)
chr4 (28-74)||(53996007-53996053)
chr4 (4-41)||(10668887-10668924)
chr4 (37-90)||(53854733-53854786)
[»] chr3 (38 HSPs)
chr3 (1-90)||(14820355-14820444)
chr3 (1-90)||(14814150-14814239)
chr3 (9-90)||(28561946-28562027)
chr3 (1-90)||(32227077-32227166)
chr3 (6-89)||(32386595-32386678)
chr3 (9-88)||(41473744-41473823)
chr3 (1-87)||(8067484-8067570)
chr3 (1-87)||(50347950-50348036)
chr3 (1-90)||(11179890-11179979)
chr3 (1-90)||(13149955-13150044)
chr3 (1-90)||(13150410-13150499)
chr3 (1-86)||(31284132-31284217)
chr3 (1-90)||(39653365-39653454)
chr3 (30-90)||(2911285-2911345)
chr3 (1-88)||(16811128-16811215)
chr3 (1-87)||(16811585-16811669)
chr3 (1-87)||(32227704-32227790)
chr3 (4-87)||(27187188-27187272)
chr3 (28-90)||(25230131-25230193)
chr3 (28-90)||(25237718-25237780)
chr3 (1-90)||(25248312-25248402)
chr3 (21-89)||(4067236-4067304)
chr3 (180-287)||(18534443-18534550)
chr3 (185-259)||(3593063-3593138)
chr3 (191-272)||(18705557-18705638)
chr3 (37-89)||(25238576-25238628)
chr3 (28-88)||(25239010-25239070)
chr3 (28-87)||(37045236-37045295)
chr3 (28-87)||(20885000-20885059)
chr3 (28-86)||(7477396-7477454)
chr3 (28-86)||(7494086-7494144)
chr3 (28-90)||(25230588-25230650)
chr3 (28-90)||(25238175-25238237)
chr3 (38-88)||(30529889-30529939)
chr3 (28-86)||(53150695-53150753)
chr3 (221-282)||(24177926-24177987)
chr3 (37-78)||(25230989-25231030)
chr3 (221-261)||(30993302-30993342)
[»] scaffold0022 (4 HSPs)
scaffold0022 (1-90)||(162990-163079)
scaffold0022 (1-87)||(162533-162620)
scaffold0022 (1-88)||(163274-163361)
scaffold0022 (1-86)||(69671-69756)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-90)||(107319-107408)
[»] scaffold0281 (1 HSPs)
scaffold0281 (184-260)||(1834-1911)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-90)||(2943-3032)
[»] scaffold0040 (1 HSPs)
scaffold0040 (1-90)||(2066-2155)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-90)||(154503-154592)
scaffold0002 (1-90)||(154958-155047)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-89)||(105922-106010)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-89)||(10501-10589)
[»] scaffold0005 (3 HSPs)
scaffold0005 (4-86)||(245287-245369)
scaffold0005 (8-78)||(245761-245831)
scaffold0005 (180-235)||(171470-171525)
[»] scaffold1519 (1 HSPs)
scaffold1519 (1-90)||(1557-1646)
[»] scaffold0277 (1 HSPs)
scaffold0277 (1-90)||(14558-14647)
[»] scaffold0499 (1 HSPs)
scaffold0499 (28-90)||(1934-1996)
[»] scaffold0217 (1 HSPs)
scaffold0217 (1-87)||(514-600)
[»] scaffold0094 (1 HSPs)
scaffold0094 (180-277)||(48227-48325)
[»] scaffold0333 (3 HSPs)
scaffold0333 (28-90)||(4761-4823)
scaffold0333 (28-90)||(5221-5283)
scaffold0333 (37-90)||(5323-5377)
[»] scaffold0047 (2 HSPs)
scaffold0047 (40-90)||(17493-17543)
scaffold0047 (37-90)||(18027-18080)
[»] scaffold0065 (2 HSPs)
scaffold0065 (6-68)||(62968-63030)
scaffold0065 (1-57)||(67219-67275)
[»] scaffold0442 (1 HSPs)
scaffold0442 (1-65)||(1-65)
[»] scaffold0088 (1 HSPs)
scaffold0088 (184-270)||(35516-35604)


Alignment Details
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 34371902 - 34371813
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  34371902 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcaacgtgttttgtcctcactcgcacgcttaccg 34371813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 8641891 - 8641980
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  8641891 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 8641980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 15512869 - 15512957
Alignment:
Q  2 atcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||    
T  15512869 atcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcaacgtattttgtcctcactcgcacgcttaccg 15512957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 3886457 - 3886544
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    ||||||||| |||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||    
T  3886457 catcccagaatgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttac 3886544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 3886913 - 3887000
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||| ||| |||||||| |||||||||||||||||||    
T  3886913 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttgtcagcgtgttttgtcctcactcgcacgcttac 3887000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 189358 - 189269
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||| |||||| ||||||  ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||    
T  189358 catcccagactactttcaggattgcggactgatcccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgtttaccg 189269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 2474239 - 2474150
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||| |||||||| | ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  2474239 catcccatactgcttttaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 2474150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 2474693 - 2474606
Alignment:
Q  3 tcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||| | ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||| ||||||||    
T  2474693 tcccagactgcttttaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttttcctcactcgcatgcttaccg 2474606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 2194094 - 2194005
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||||  |||| | ||||| |||||||||||||||  ||||||||| |||||||| ||||||||||||| |||||||    
T  2194094 catcccagactgctttcagcattgtcgactgaccccacaaaccaacacgggtcttttcagcgtgttttgtcctcactcgcacacttaccg 2194005  T

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Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 34868068 - 34867979
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| || ||||||||||| |||||| |||||||| | |||||||| |||| ||| ||||||||||||    
T  34868068 catcccagactgctttcaggattgccgacggatcccacaaatcaacacgagtctttttagcgtgttttgtccttacttgcacgcttaccg 34867979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 42788502 - 42788591
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||| | |||||  ||||||||||||||  ||||||||| |||||||| |||||||||||| ||||||||    
T  42788502 catcccagactgctttcaggattgtcgactgactccacaaaccaacacgggtcttttcagcgtgttttgtcctcactcgcaagcttaccg 42788591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 17445338 - 17445400
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  17445338 actgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 17445400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 34372354 - 34372272
Alignment:
Q  5 ccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    |||||||||||||| ||||||| |||||  ||| |||||||||| ||| |||||| |||||||| ||||||||||||||||||    
T  34372354 ccagactgctttcaggattgccgactgacgccataaaccaacacgagtattttcagcgtgttttttcctcactcgcacgctta 34372272  T

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Target: chr5; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 21883941 - 21884008
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgtttt 68  Q
    |||||||||||||||||| ||||| | ||||| ||||||||||||||| |||||||||| ||||||||    
T  21883941 catcccagactgctttcaagattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgtttt 21884008  T

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Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 20039352 - 20039420
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||  |||||||||||  |||||||||| |||||||| |||||||||||||||||||||    
T  20039352 attgccaactgatca-acaaaccaacatgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 20039420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 30684875 - 30684952
Alignment:
Q  9 actgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    |||||||||| ||||||| | ||| ||||||||||||||| |||||||||| |||||||| ||||| || ||||||||    
T  30684875 actgctttcaagattgccgattgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcgcttgcacgctt 30684952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 30720116 - 30720201
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    |||||||||||||||||| ||||| | | |||  |||||||||||||  |||||||||| |||||||| ||||| |||||||||||    
T  30720116 catcccagactgctttcaagattgtcgattgactccacaaaccaacaggagtcttttcagcgtgttttgtcctcgctcgcacgctt 30720201  T

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Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 187810 - 187759
Alignment:
Q  39 aaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  187810 aaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 187759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 22557260 - 22557170
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtctttt-caacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||  | |||| ||||| | ||||| || |||||||||||| |||||||| || |||||||| |||||||||||||||||||||    
T  22557260 catcccagacgacattcaggattgtcgactgaccctacaaaccaacacgagtcttttacagcgtgttttgtcctcactcgcacgcttaccg 22557170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 24182114 - 24182183
Alignment:
Q  13 ctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcac 82  Q
    |||||| ||||| | ||| | ||||||||||||||| | ||||||||||||||||| |||||||||||||    
T  24182114 ctttcaggattgtcgactaaccccacaaaccaacacgaatcttttcaacgtgttttatcctcactcgcac 24182183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 1880330 - 1880278
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttacc 89  Q
    |||||||||||| |||||||||| |||||||| ||||||||||| ||||||||    
T  1880330 acaaaccaacacgagtcttttcagcgtgttttgtcctcactcgctcgcttacc 1880278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 22556800 - 22556737
Alignment:
Q  28 actgatcccacaaaccaacactagtctttt-caacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| || |||||||||||| |||||||| || |||||||| |||||||||||||||||||||    
T  22556800 actgaccctacaaaccaacacgagtcttttacagcgtgttttgtcctcactcgcacgcttaccg 22556737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 29679983 - 29680049
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    |||||| ||||| || |||||||||||| |||||||||| |||||||| |||||| | |||||||||    
T  29679983 attgccgactgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctcatttgcacgctta 29680049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 1822160 - 1822107
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||| |||||||||| |||||||| |||||| || |||||||||||    
T  1822160 acaaaccaacacgagtcttttcagcgtgttttgtcctcattcacacgcttaccg 1822107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 10927295 - 10927348
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||| |||||||||| |||||||| |||||| || |||||||||||    
T  10927295 acaaaccaacacgagtcttttcagcgtgttttgtcctcattcacacgcttaccg 10927348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 8391205 - 8391260
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacg 83  Q
    ||||| |||||||| |||||| |||||| ||| |||||||| ||||||||||||||    
T  8391205 actgaccccacaaatcaacacgagtcttctcagcgtgttttgtcctcactcgcacg 8391260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 18750079 - 18750133
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcac 82  Q
    ||||| ||||||||||||| | ||||||||||  ||||||| |||||||||||||    
T  18750079 actgaccccacaaaccaactcgagtcttttcagtgtgttttgtcctcactcgcac 18750133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 8366719 - 8366678
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactc 78  Q
    |||||||||||| ||||||||||||||||||| || ||||||    
T  8366719 acaaaccaacacgagtcttttcaacgtgttttgtcgtcactc 8366678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 30966524 - 30966435
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||    
T  30966524 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcaacgtgttttgtcctcactcgcatgcttaccg 30966435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 30966980 - 30966891
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| |||||  |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  30966980 catcccagactgctttcaggattgccgactgactccacaaaccaacacgagtcttttcaacgtgttttgtcctcactcgcacgcttaccg 30966891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 32377763 - 32377852
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  32377763 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 32377852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 32377575 - 32377661
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||| | ||||||| ||||| ||||||||||||||| ||| |||||| |||||||| |||||||||||||||||||||    
T  32377575 cccagactgcttttaggattgccgactgaccccacaaaccaacacgagttttttcagcgtgttttgtcctcactcgcacgcttaccg 32377661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33175246 - 33175157
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| || |||||| ||||| ||||||| || |||||||| |||||||||||||||||||||    
T  33175246 catcccagactgctttcaggattgccgactgaccctacaaactaacacgagtctttccagcgtgttttgtcctcactcgcacgcttaccg 33175157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 5399673 - 5399762
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||| | ||||| | ||||| ||||||||||||||| ||||||| || |||||||| | |||||||||||||||||||    
T  5399673 catcccagactgcttttaggattgtcgactgaccccacaaaccaacacaagtctttccagcgtgttttgttctcactcgcacgcttaccg 5399762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 25337853 - 25337942
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||| |||||||||||||  |||| | ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||    
T  25337853 catctcagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacacttaccg 25337942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 29259504 - 29259565
Alignment:
Q  29 ctgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||    
T  29259504 ctgatcccacaaaccaacacgagtcttttcaacgtgttttgtcctcactcgcatgcttaccg 29259565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 24818615 - 24818527
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttacc 89  Q
    |||||| |||| ||||||  |||| | ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  24818615 catccccgactactttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttacc 24818527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 1912778 - 1912725
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  1912778 acaaaccaacacgagtcttttcaacgtgttttgtcctcactcgcacgcttaccg 1912725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 30963127 - 30963204
Alignment:
Q  9 actgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    |||||||||| ||||||| | ||| | ||||||||||||| |||||||||||||| |||| |||||||||||||||||    
T  30963127 actgctttcatgattgccgattgacctcacaaaccaacacgagtcttttcaacgtattttatcctcactcgcacgctt 30963204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 33771291 - 33771202
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||| ||||||||  ||||||  |||| ||||||||||||||| ||||||||||  ||||||| |||||||||||| ||||||||    
T  33771291 catcccagattgctttcagaattgccggctgaccccacaaaccaacacgagtcttttcagtgtgttttgtcctcactcgcatgcttaccg 33771202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 29804937 - 29804871
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttt 67  Q
    ||||||||||||||||||  |||| | ||||||||||||||||||||| |||||||||| |||||||    
T  29804937 catcccagactgctttcagcattgtcgactgatcccacaaaccaacacgagtcttttcagcgtgttt 29804871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 16379200 - 16379139
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttacc 89  Q
    ||||| || |||||||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  16379200 actgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttacc 16379139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 16379647 - 16379596
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||||||||    
T  16379647 acaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttac 16379596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 30961745 - 30961824
Alignment:
Q  7 agactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    ||||| |||||| ||||||| | ||| ||||||||| ||||| ||||||||||  ||||||| |||||||||||||||||    
T  30961745 agactcctttcatgattgccgattgaccccacaaactaacacaagtcttttcactgtgttttgtcctcactcgcacgctt 30961824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 83307 - 83226
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcac 82  Q
    |||| |||||| |||||| ||||||| | | | ||||||||||||||  |||||| |||||||||||| |||||||||||||    
T  83307 catctcagactactttcatgattgccgaataaccccacaaaccaacataagtcttatcaacgtgttttgtcctcactcgcac 83226  T

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Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 30963598 - 30963658
Alignment:
Q  23 tgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacg 83  Q
    |||| |||||||||||||||||| || ||||||||||  ||||||| ||||||||||||||    
T  30963598 tgccgactgatcccacaaaccaaaacgagtcttttcactgtgttttgtcctcactcgcacg 30963658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 15620149 - 15620099
Alignment:
Q  40 aaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||| |||||||||| || ||||| |||||||||||||||||||||    
T  15620149 aaccaacacgagtcttttcagcgagttttgtcctcactcgcacgcttaccg 15620099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 15640004 - 15639938
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    |||||| ||||| || || ||||||||| |||||||||  |||||||| ||||||||||||||||||    
T  15640004 attgccgactgaccctaccaaccaacacgagtcttttctgcgtgttttgtcctcactcgcacgctta 15639938  T

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Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 20502234 - 20502172
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacg 83  Q
    |||||| ||||| || |||||| ||||| |||||||||| |||||||| ||||||||||||||    
T  20502234 attgccgactgaccctacaaactaacacgagtcttttcagcgtgttttgtcctcactcgcacg 20502172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 25433932 - 25434000
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttacc 89  Q
    |||||| ||||| || |||||||||||| | |||||||| |||||||| |||| |||| ||||||||||    
T  25433932 attgccgactgaccctacaaaccaacacgaatcttttcagcgtgttttgtccttactcacacgcttacc 25434000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 36924373 - 36924421
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgct 85  Q
    |||||||||||| ||||||| || |||||||| ||||||||||||||||    
T  36924373 acaaaccaacacgagtctttccagcgtgttttgtcctcactcgcacgct 36924421  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 8181254 - 8181299
Alignment:
Q  38 caaaccaacactagtcttttcaacgtgttttctcctcactcgcacg 83  Q
    ||||||||||| |||||||||| |||||||| |||||||| |||||    
T  8181254 caaaccaacacgagtcttttcagcgtgttttgtcctcacttgcacg 8181299  T

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Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20054392 - 20054481
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  20054392 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 20054481  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20054848 - 20054937
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  20054848 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 20054937  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20055304 - 20055393
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  20055304 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 20055393  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20055760 - 20055849
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  20055760 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 20055849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20056216 - 20056305
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  20056216 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 20056305  T

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Target: chr1; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20056672 - 20056761
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  20056672 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 20056761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20057119 - 20057208
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  20057119 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 20057208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20057575 - 20057664
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  20057575 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 20057664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20845517 - 20845606
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||| ||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  20845517 catctcagactgctttcaagattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 20845606  T

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Target: chr1; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 50002931 - 50003020
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||  ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  50002931 catcccagactgctttcaggattgctgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 50003020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 20060199 - 20060285
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||| || |||||||| |||||||||||||||||||||    
T  20060199 cccagactgctttcaggattgccgactgaccccacaaaccaacacgagtctttccatcgtgttttgtcctcactcgcacgcttaccg 20060285  T

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Target: chr1; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 38341196 - 38341107
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| |||| |||||||||| |||||||||  |||||||| |||||||||||||||||||||    
T  38341196 catcccagactgctttcaggattgccgactgaccccataaaccaacacgagtcttttccgcgtgttttgtcctcactcgcacgcttaccg 38341107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 20053936 - 20054024
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttacc 89  Q
    |||||||||||||||||| ||||| | ||||| ||||||||||||||| |||||||||| | |||||| ||||||||||||||||||||    
T  20053936 catcccagactgctttcaggattgtcgactgaccccacaaaccaacacgagtcttttcagcatgttttgtcctcactcgcacgcttacc 20054024  T

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Target: chr1; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 35759920 - 35760003
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgc 84  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| ||||| |||||||||    
T  35759920 catcccagactgctttcatgattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcgctcgcacgc 35760003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 16451789 - 16451875
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| || |||| ||||||||||    
T  16451789 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcatcacgcgcacgctta 16451875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 16460942 - 16461028
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| || |||| ||||||||||    
T  16460942 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcatcacgcgcacgctta 16461028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 35759467 - 35759553
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||| |||||| ||||||| ||||| |||| |||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  35759467 cccagactactttcatgattgccgactgaccccaaaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 35759553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 52250496 - 52250407
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||||  |||| | ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||    
T  52250496 catcccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacacttaccg 52250407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 46693591 - 46693680
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||| |||||||||| ||||| | ||||| |||||||||||||||  ||||||||| |||||||| ||||||||||||||| |||||    
T  46693591 catcccaaactgctttcaggattgtcgactgaccccacaaaccaacacgggtcttttcagcgtgttttgtcctcactcgcacgcataccg 46693680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 50002575 - 50002652
Alignment:
Q  13 ctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||| ||||| | ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  50002575 ctttcaggattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 50002652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 52250833 - 52250744
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||||  |||| | ||||| ||||||||||||||| |||||||||| |||||||| || |||||||||| |||||||    
T  52250833 catcccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcttcactcgcacacttaccg 52250744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 52251170 - 52251081
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||||  |||| | ||||| ||||||||||||||| |||||||||| |||||||| || |||||||||| |||||||    
T  52251170 catcccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcttcactcgcacacttaccg 52251081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 51372732 - 51372819
Alignment:
Q  3 tcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| |||||||||| ||||||| | ||| ||||||||||||||| |||||||||| ||  |||| |||||||||||||||||||||    
T  51372732 tcccatactgctttcaagattgccgattgaccccacaaaccaacacgagtcttttcagcggattttgtcctcactcgcacgcttaccg 51372819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 31822975 - 31823064
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||| |||||||  ||||||  ||||| |||||||| |||||| |||||||||| | |||||| |||||||||||| ||||||||    
T  31822975 catcccagaatgctttctggattgctgactgaccccacaaatcaacacgagtcttttcagcatgttttgtcctcactcgcatgcttaccg 31823064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 49996536 - 49996613
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactc 78  Q
    |||| ||||||||||| | ||||||| ||||| ||||||||| ||||  |||||||||| |||||||| |||||||||    
T  49996536 catctcagactgcttttaggattgccgactgaccccacaaactaacaagagtcttttcagcgtgttttgtcctcactc 49996613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 43056941 - 43057010
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||| ||||| || |||||||||||| ||| ||||||  ||||||| |||||||||||| ||||||||    
T  43056941 attgccgactgaccctacaaaccaacacaagttttttcagtgtgttttgtcctcactcgcatgcttaccg 43057010  T

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Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 28181350 - 28181416
Alignment:
Q  2 atcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgtttt 68  Q
    |||||| |||||||||| ||||| ||||||   |||||||||||||| ||||||||||  |||||||    
T  28181350 atcccatactgctttcaggattgtcaactgcctccacaaaccaacacgagtcttttcagagtgtttt 28181416  T

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Target: scaffold0322 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 19256 - 19167
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||| |||||||||||    
T  19256 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcacacgcttaccg 19167  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 32292231 - 32292142
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| || |||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  32292231 catcccagactgctttcaggattgccgactgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 32292142  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 22548405 - 22548492
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    ||||||| |||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||    
T  22548405 catcccatactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttac 22548492  T

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Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 22548851 - 22548938
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    ||||||| |||||||||| ||||||| ||||| ||||||||||||||| ||||| |||| |||||||| |||||||||||||||||||    
T  22548851 catcccatactgctttcaggattgccgactgaccccacaaaccaacacgagtctgttcagcgtgttttatcctcactcgcacgcttac 22548938  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 22026670 - 22026580
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtg-ttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||  ||| |||| |||||||||||||||||||||    
T  22026670 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagtgtgtttttgtcctcactcgcacgcttaccg 22026580  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 21315966 - 21316055
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||| | ||||| | | ||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  21315966 catcccagactgcttttaggattgtcgattgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 21316055  T

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Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 34308335 - 34308424
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||| ||| |||||||||| |||||||| ||||||||| || ||||||||    
T  34308335 catcccagactgctttcaggattgccgactgaccccacaaaccagcacgagtcttttcagcgtgttttgtcctcactcacatgcttaccg 34308424  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 34308791 - 34308880
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||  ||||| ||||||||||||||| |||||||||| |||||||| ||||||||| || ||||||||    
T  34308791 catcccagactgctttcaggattgctgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcacatgcttaccg 34308880  T

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Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 27022195 - 27022283
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttacc 89  Q
    |||||||||||||||| | ||||| | ||||| ||||||||||||||| |||||||| | |||||||| ||||||||||||||||||||    
T  27022195 catcccagactgcttttaggattgtcgactgaccccacaaaccaacacgagtctttttagcgtgttttgtcctcactcgcacgcttacc 27022283  T

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Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 12827110 - 12827199
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||| | ||||| ||||||||||||||| |||||||| || |||||||  |||||||||||| |||||||    
T  12827110 catcccagactgctttcaggattgtcgactgaccccacaaaccaacacgagtcttttaaaagtgttttaacctcactcgcacacttaccg 12827199  T

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Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 17103372 - 17103283
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||  |||| | ||||| | ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  17103372 catcccagacgacttttaggattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 17103283  T

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Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 31283508 - 31283597
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||  ||||||  |||| | ||||| ||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  31283508 catcccagacgactttcaacattgtcgactgaccccacaaaccaacacgagtcttttcaacgcgttttgtcctcactcgcacgcttaccg 31283597  T

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Target: chr8; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 25147819 - 25147740
Alignment:
Q  7 agactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    |||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| | ||||||||||||||||    
T  25147819 agactgctttcaggattgccgactga-cccacaaaccaacacgagtcttttcagcgtgttttgtactcactcgcacgctta 25147740  T

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Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 12100953 - 12100893
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||    
T  12100953 actgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttac 12100893  T

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Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 41658972 - 41659048
Alignment:
Q  12 gctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    |||||||  |||||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||    
T  41658972 gctttcagcattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacacttac 41659048  T

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Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 30527365 - 30527427
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||| ||||| |||||| |||||||||| |||||||| |||||||||||||||||||||    
T  30527365 actgatcctacaaatcaacacgagtcttttcagcgtgttttatcctcactcgcacgcttaccg 30527427  T

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Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 8080234 - 8080287
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  8080234 acaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 8080287  T

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Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 6463438 - 6463489
Alignment:
Q  39 aaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  6463438 aaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 6463489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 2044321 - 2044259
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| || ||||||||| || |||||||||| |||||||| |||||||||||||||||||||    
T  2044321 actgaccctacaaaccaatacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 2044259  T

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Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 25148248 - 25148174
Alignment:
Q  9 actgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacg 83  Q
    |||||||| | ||||| | ||||| ||||||||||||||| |||||||||| ||||||||  |||||||||||||    
T  25148248 actgcttttaggattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgacctcactcgcacg 25148174  T

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Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 10844471 - 10844560
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||  |||| | ||||| | ||||| || |||||| ||||| |||||||||| |||||||| |||||||||||| ||||||||    
T  10844471 catcccagacgacttttaggattgtcgactgaccctacaaacaaacacgagtcttttcagcgtgttttgtcctcactcgcatgcttaccg 10844560  T

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Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 32292651 - 32292598
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||| |||||||||| |||||||| ||||||||| |||||||||||    
T  32292651 acaaaccaacacgagtcttttcagcgtgttttgtcctcactcacacgcttaccg 32292598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 9883694 - 9883634
Alignment:
Q  190 ggaaatcatcaattcggcaaagtagaggtatgggggagtctctatttaccttaacggttgt 250  Q
    |||||||||||||||  |||| ||||||||||||||||| |||||||||| ||| ||||||    
T  9883694 ggaaatcatcaattctacaaactagaggtatgggggagtttctatttaccataagggttgt 9883634  T

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Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 9251169 - 9251098
Alignment:
Q  7 agactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactc 78  Q
    |||||||||||| ||||| | | ||| ||||||||||||||| ||| |||||| |||||||| |||||||||    
T  9251169 agactgctttcaggattgtcgattgaccccacaaaccaacacaagttttttcagcgtgttttgtcctcactc 9251098  T

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Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 25308035 - 25307969
Alignment:
Q  20 gattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    ||||||| |||||||||| ||| |||||| |||||||||| |||  ||| |||||||||||||||||    
T  25308035 gattgccgactgatcccataaatcaacacgagtcttttcagcgtactttgtcctcactcgcacgctt 25307969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 27926161 - 27926099
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| || |||||||||||| |||||||||| | |||||| ||||||||||||| |||||||    
T  27926161 actgaccctacaaaccaacacgagtcttttcagcatgttttgtcctcactcgcacacttaccg 27926099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 17290652 - 17290583
Alignment:
Q  221 gggggagtctctatttaccttaacggttgtatgaacatatgaatagtgaaggatttttatttgttttcat 290  Q
    ||||||||||||||| ||| ||| ||||||||||| |||||  | ||||||| ||||| |||||||||||    
T  17290652 gggggagtctctattcaccataagggttgtatgaatatatgggttgtgaagggtttttgtttgttttcat 17290583  T

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Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 28453628 - 28453548
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgca 81  Q
    |||||||||||||||| | ||||| | |||||||  |||||| ||||| | |||||||| | |||||| ||||||||||||    
T  28453628 catcccagactgcttttaggattgtcgactgatcttacaaacaaacacgactcttttcagcatgttttgtcctcactcgca 28453548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 34688099 - 34688044
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacg 83  Q
    |||| ||| |||||||||||  ||||||||||||||||||| |||||| |||||||    
T  34688099 actggtcctacaaaccaacatgagtcttttcaacgtgttttgtcctcattcgcacg 34688044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 6466546 - 6466468
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcg 79  Q
    ||||||||||  ||||||  |||||| ||||  ||||||||||||||| |||||||| | |||| ||| ||||||||||    
T  6466546 catcccagacgactttcagtattgccgactggccccacaaaccaacacaagtctttttagcgtgctttgtcctcactcg 6466468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 41913222 - 41913172
Alignment:
Q  39 aaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttacc 89  Q
    |||| ||||| ||| ||||||||||||||| |||||||| |||||||||||    
T  41913222 aaactaacacgagttttttcaacgtgttttgtcctcacttgcacgcttacc 41913172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 15818892 - 15818953
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcac 82  Q
    |||||| ||||  ||||||||||||||| ||||||||||  ||| ||| |||||||||||||    
T  15818892 attgccgactggccccacaaaccaacacaagtcttttcagtgtgctttgtcctcactcgcac 15818953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 2941613 - 2941702
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||  ||||||| ||||| | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  2941613 catcccagactgctttcgtgattgccgactgaccgcacaaaccaacacgagtcttttcagcgtgttttctcctcactcgcacgcttaccg 2941702  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 9125246 - 9125160
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| | |||||| |||||||||||||||||||||    
T  9125246 cccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcatgttttgtcctcactcgcacgcttaccg 9125160  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 43233247 - 43233158
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||  ||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  43233247 catcccaatctgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 43233158  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 18833573 - 18833487
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||| ||||||| ||| |||||||||| |||||| |||||||||| |||||||| |||||||||||||| ||||||    
T  18833573 cccagactgctttcaggattgccgacttatcccacaaatcaacacgagtcttttcagcgtgttttgtcctcactcgcacgtttaccg 18833487  T

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Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 2193546 - 2193457
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||| ||||||||||||| ||||||| ||||| |||||||| |||||| |||||||||| |||||||| ||||||||| |||||||||||    
T  2193546 catctcagactgctttcaggattgccgactgaccccacaaatcaacacgagtcttttcagcgtgttttgtcctcactcacacgcttaccg 2193457  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 7646334 - 7646423
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||||  |||| | ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||    
T  7646334 catcccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacacttaccg 7646423  T

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Target: chr7; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 28495475 - 28495560
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    |||| ||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| || ||||| |||||||||||||||||    
T  28495475 catcgcagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgggttttgtcctcactcgcacgctt 28495560  T

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Target: chr7; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 28496136 - 28496055
Alignment:
Q  9 actgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||| ||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  28496136 actgttttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 28496055  T

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Target: chr7; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 36422541 - 36422452
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||||  |||| | ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||    
T  36422541 catcccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacacttaccg 36422452  T

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Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 42515821 - 42515745
Alignment:
Q  14 tttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  42515821 tttcaagattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 42515745  T

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Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 13122363 - 13122450
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtg-ttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||| ||||||| | ||| ||||||||||||||| |||||||||| |||| |||| |||||||||||||||||||||    
T  13122363 cccagactgctttcaggattgccgattgaccccacaaaccaacacgagtcttttcagcgtgtttttgtcctcactcgcacgcttaccg 13122450  T

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Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 2189434 - 2189345
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||  |||||||| |||||| |||||| ||| |||||||| ||||||||| |||||||||||    
T  2189434 catcccagactgctttcaggattgccgactgtccccacaaatcaacacgagtcttctcagcgtgttttgtcctcactcacacgcttaccg 2189345  T

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Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 13124994 - 13125079
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtg-ttttctcctcactcgcacgcttac 88  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||||| |||| ||||| |||| |||| |||||||||||||||||||    
T  13124994 cccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcctttcagcgtgtttttgtcctcactcgcacgcttac 13125079  T

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Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 6747462 - 6747542
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgca 81  Q
    |||||||||||||||| |  |||||| ||||| || |||||||||||| |||||||||||| |||||| ||||||||||||    
T  6747462 catcccagactgctttaagcattgccgactgaccctacaaaccaacacaagtcttttcaacttgttttgtcctcactcgca 6747542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 6718931 - 6719020
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||  |||| | ||||||  ||||| ||||||||||||||| | ||||||||  ||||||| |||||||||||||||||||||    
T  6718931 catcccagacgacttttaggattgctgactgaccccacaaaccaacacgattcttttcagtgtgttttgtcctcactcgcacgcttaccg 6719020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 6747952 - 6748021
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||| ||||| || |||||||||||| |||||||||| |||||||| ||||||||||||| |||||||    
T  6747952 attgccgactgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacacttaccg 6748021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 42515362 - 42515293
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||| ||||| || |||||||||||| |||||||||| |||||||| ||||||| |||||||||||||    
T  42515362 attgccgactgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctcacccgcacgcttaccg 42515293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 3312709 - 3312654
Alignment:
Q  180 ttcaaccgtaggaaatcatcaattcggcaaagtagaggtatgggggagtctctatt 235  Q
    |||||||||||||| |||||||||||||||| ||||| || |||||||||||||||    
T  3312709 ttcaaccgtaggaagtcatcaattcggcaaactagagataagggggagtctctatt 3312654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 7646705 - 7646619
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    ||||||||||  |||| | ||||| | ||| | ||||||||||||||| ||||||||||  ||||||| ||||||||||||||||||    
T  7646705 catcccagacgacttttaggattgtcgactaaccccacaaaccaacacgagtcttttcagtgtgttttgtcctcactcgcacgctta 7646619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 34405474 - 34405536
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| |||||||| ||||||  ||||||||| |||||||| |||||||||||||||||||||    
T  34405474 actgaccccacaaatcaacacgggtcttttcagcgtgttttgtcctcactcgcacgcttaccg 34405536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 29038896 - 29038965
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||| ||||| || |||||||||||| |||||||||| |||||||| |||||| || |||||||||||    
T  29038896 attgccgactgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctcagtcacacgcttaccg 29038965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 26419104 - 26419168
Alignment:
Q  14 tttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactc 78  Q
    ||||| ||||| | ||||| ||||||||||||||| |||||||||||| |||||| |||||||||    
T  26419104 tttcaggattgtcgactgaccccacaaaccaacacgagtcttttcaacatgttttgtcctcactc 26419168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 2611542 - 2611601
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    ||||| || |||||||||||| ||||||||||  ||||||| ||||||||||||||||||    
T  2611542 actgaccctacaaaccaacacgagtcttttcagagtgttttgtcctcactcgcacgctta 2611601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 3311008 - 3310953
Alignment:
Q  180 ttcaaccgtaggaaatcatcaattcggcaaagtagaggtatgggggagtctctatt 235  Q
    |||||| ||||||| ||||||||||| |||| |||||||| |||||||||||||||    
T  3311008 ttcaacagtaggaagtcatcaattcgacaaactagaggtaagggggagtctctatt 3310953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 43776179 - 43776233
Alignment:
Q  34 cccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    ||||||||||||||| |||||||||| |||||||| || ||| ||||||||||||    
T  43776179 cccacaaaccaacacgagtcttttcagcgtgttttgtcttcattcgcacgcttac 43776233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 43776375 - 43776321
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtctt 55  Q
    |||||||||||||||||| ||||||| ||| | ||||||||||||||| ||||||    
T  43776375 catcccagactgctttcaggattgccgactaaccccacaaaccaacacgagtctt 43776321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 3305231 - 3305292
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttacc 89  Q
    |||||||| ||||| |||||| |||||||||| |||||||| | ||||||||||| ||||||    
T  3305231 actgatcctacaaatcaacacgagtcttttcagcgtgttttgttctcactcgcactcttacc 3305292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 29357348 - 29357397
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    |||||||||||| ||||||||||||||| ||| | |||||||||||||||    
T  29357348 acaaaccaacacgagtcttttcaacgtgctttgttctcactcgcacgctt 29357397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 35474013 - 35474066
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||| |||| ||||| |||||||| ||||||||||||| |||||||    
T  35474013 acaaaccaacacaagtcatttcagcgtgttttgtcctcactcgcacacttaccg 35474066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 7461267 - 7461319
Alignment:
Q  30 tgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcac 82  Q
    |||||||||||| |||||| |||||||||| |||||||| || ||||||||||    
T  7461267 tgatcccacaaatcaacacgagtcttttcagcgtgttttatcttcactcgcac 7461319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 22529118 - 22529180
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| || |||||||||||  |||||||||| ||| |||| ||||||||| |||||||||||    
T  22529118 actgaccctacaaaccaacatgagtcttttcagcgtattttgtcctcactcacacgcttaccg 22529180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 36422645 - 36422591
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcac 82  Q
    ||||| |||||||| |||||| ||||||||||  ||||||| |||||||||||||    
T  36422645 actgaccccacaaatcaacacgagtcttttcagtgtgttttgtcctcactcgcac 36422591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 18833670 - 18833633
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaa 41  Q
    ||||||||||||||| ||||||| ||||||||||||||    
T  18833670 cccagactgctttcaggattgccgactgatcccacaaa 18833633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 13695924 - 13695880
Alignment:
Q  180 ttcaaccgtaggaaatcatcaattcggcaaagtagaggtatgggg 224  Q
    ||||||||||| || |||||||||||||||| |||||||| ||||    
T  13695924 ttcaaccgtagaaattcatcaattcggcaaactagaggtaagggg 13695880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 17027387 - 17027476
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||| |||||||||||    
T  17027387 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcacacgcttaccg 17027476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 9352350 - 9352263
Alignment:
Q  3 tcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| | |||||| |||||||||||||||||||||    
T  9352350 tcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcatgttttgtcctcactcgcacgcttaccg 9352263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 20850608 - 20850522
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||| |||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  20850608 cccatactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 20850522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 7912168 - 7912079
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||| | ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||| ||||||||    
T  7912168 catcccagactgctttcaggattgtcgactgaccccacaaaccaacacaagtcttttcagcgtgttttgtcctcactcgcatgcttaccg 7912079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 2681076 - 2681163
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    |||||||||| ||||||| ||||||| ||||| ||||||||||||||| |||||| |||||||||||| |||||||| ||||||||||    
T  2681076 catcccagacagctttcaggattgccgactgaccccacaaaccaacacgagtcttctcaacgtgttttgtcctcacttgcacgcttac 2681163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 23986173 - 23986258
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    ||||||| ||||||||||  |||||| ||||| ||||||||||||||| |||||||||| ||||| ||||||||||||||||||||    
T  23986173 catcccatactgctttcagaattgccgactgaccccacaaaccaacacaagtcttttcagcgtgtcttctcctcactcgcacgctt 23986258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 13191372 - 13191455
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    ||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||  || |||| ||||||||||||||||||    
T  13191372 cccagactgctttcaagattgccgactgaccccacaaaccaacacgagtcttttcagtgtattttgtcctcactcgcacgctta 13191455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 13492617 - 13492535
Alignment:
Q  7 agactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtg-ttttctcctcactcgcacgcttac 88  Q
    |||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||| |||| |||||||||||||||||||    
T  13492617 agactgctttcaagattgccgactgaccccacaaaccaacacgagtcttttcagcgtgtttttttcctcactcgcacgcttac 13492535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20896543 - 20896633
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtg-ttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| |||||||  |||| ||||||||||||||| ||||||||||  ||| |||||||||||||||||| |||||||    
T  20896543 catcccagactgctttcaagattgccggctgaccccacaaaccaacacgagtcttttcagtgtgtttttctcctcactcgcacacttaccg 20896633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 23776730 - 23776643
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    |||||||||||||||||| ||||||| |||||  |||||||||||||| | |||||||| |||||||| || ||||||||||| ||||    
T  23776730 catcccagactgctttcaggattgccgactgactccacaaaccaacacgaatcttttcagcgtgttttgtcgtcactcgcacgtttac 23776643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 7912600 - 7912514
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    ||||||||| |||||||| ||||||| ||| | ||||||||||||||  |||||||||| |||||||| |||||||||| |||||||    
T  7912600 catcccagattgctttcaggattgccgactaaccccacaaaccaacatgagtcttttcagcgtgttttgtcctcactcgtacgctta 7912514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 28780400 - 28780312
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttacc 89  Q
    ||||||||||||||||||  |||| |  |||| ||||||||||||||| |||||||||||  |||||| ||||||||||||| ||||||    
T  28780400 catcccagactgctttcagcattgtcggctgaccccacaaaccaacacgagtcttttcaaaatgttttatcctcactcgcacacttacc 28780312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 2891170 - 2891239
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||| ||||| || |||||||||||| | |||||||| |||||||| |||||||||||||||||||||    
T  2891170 attgccgactgaccctacaaaccaacacgaatcttttcagcgtgttttgtcctcactcgcacgcttaccg 2891239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 13493077 - 13492990
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtg-ttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||| ||||||  ||||| || ||||| |||||| |||||||||| | || |||| |||||||||||||||||||||    
T  13493077 cccagactgctttcaggattgctgactgaccctacaaatcaacacgagtcttttcagcatgtttttgtcctcactcgcacgcttaccg 13492990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 9440713 - 9440794
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcac 82  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||| ||| ||| |||||| ||| |||| || ||||| ||||    
T  9440713 catcccagactgctttcaagattgccgactgaccccacaaaccagcacgagttttttcagcgtattttgtcatcacttgcac 9440794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 15929429 - 15929344
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    |||||||||||||||| | ||||||| | ||| |||||||| |||||| |||||||| | ||| |||| ||||||||| |||||||    
T  15929429 catcccagactgctttaaggattgccgagtgaccccacaaatcaacacaagtctttttagcgtattttgtcctcactcacacgctt 15929344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 2890722 - 2890781
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    ||||| || |||||||||||| |||||||| | |||||||| ||||||||||||||||||    
T  2890722 actgaccctacaaaccaacacgagtctttttagcgtgttttgtcctcactcgcacgctta 2890781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 37 - 88
Target Start/End: Original strand, 20126074 - 20126125
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    |||||||||||| ||||||||||  ||||||| |||||||||||||||||||    
T  20126074 acaaaccaacacgagtcttttcagtgtgttttgtcctcactcgcacgcttac 20126125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 17730992 - 17731054
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| || |||||||||||| |||||||| | |||||||| |||||||| ||||||||||||    
T  17730992 actgaccctacaaaccaacacgagtctttttagcgtgttttgtcctcacttgcacgcttaccg 17731054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 31415965 - 31416026
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacg 83  Q
    |||||| ||||||||||||||||||||| | |||||||| |||||||| ||||||||| ||||    
T  31415965 attgccgactgatcccacaaaccaacacga-tcttttcagcgtgttttgtcctcactcacacg 31416026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 3652793 - 3652724
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||| ||||||| || |||||||||||  |||||||||| | | |||| |||||||||||||||||||||    
T  3652793 attgtcaactgaccctacaaaccaacaagagtcttttcagctttttttgtcctcactcgcacgcttaccg 3652724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 11062083 - 11062030
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||| ||| |||| | |||||||| |||||||||||||||||||||    
T  11062083 acaaaccaacacgagtttttttagcgtgttttgtcctcactcgcacgcttaccg 11062030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 6331224 - 6331279
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttt 56  Q
    |||| ||||||||||||| ||||||| ||||| || |||||||||||| |||||||    
T  6331224 catctcagactgctttcaagattgccgactgaccctacaaaccaacacgagtcttt 6331279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 28583249 - 28583169
Alignment:
Q  6 cagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    ||||||||||||  ||||||| ||||| ||||||||| ||||  ||||||||||   |||||| ||| ||||| |||||||    
T  28583249 cagactgctttcgagattgccgactgaccccacaaactaacatgagtcttttcagtatgttttgtccccactcacacgctt 28583169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 58 - 90
Target Start/End: Original strand, 33774915 - 33774947
Alignment:
Q  58 caacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||| |||||||||||||||||||||    
T  33774915 caacgtgttttttcctcactcgcacgcttaccg 33774947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 2385 - 2297
Alignment:
Q  2 atcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||| | ||||| | |||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  2385 atcccagactgcttttaggattgtcgactgatcctacaaaccaacacgagtcttttcagcgtgttttctcctcactcgcacgcttaccg 2297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 13389 - 13476
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    |||||| ||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||    
T  13389 catcccggactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttac 13476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 1510 - 1421
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||| | |||||  |||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  1510 catcccagactgctttcaggattgtcgactgacgccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 1421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 24629286 - 24629375
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||| ||||||||||||| ||||||| ||||| ||||||||| ||||| |||||||||| |||||||| |||||||||||||||||||||    
T  24629286 catcacagactgctttcaggattgccgactgaccccacaaactaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 24629375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 15268029 - 15268112
Alignment:
Q  7 agactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||    
T  15268029 agactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacacttaccg 15268112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 35871907 - 35871828
Alignment:
Q  11 tgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||    
T  35871907 tgctttcaggattgccgactgatcccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgtttaccg 35871828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 4127276 - 4127357
Alignment:
Q  9 actgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||| |||||||||||    
T  4127276 actgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcacacgcttaccg 4127357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13266376 - 13266295
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcac 82  Q
    ||||||| |||||||||| ||||| | ||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  13266376 catcccatactgctttcaggattgtcgactgaccccacaaaccaacacaagtcttttcaacatgttttctcctcactcgcac 13266295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 35477950 - 35477861
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||| |||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| ||||| |||||||| ||||||    
T  35477950 catcccatactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctctctcgcacgtttaccg 35477861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 50398844 - 50398933
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| || |||||||||||| ||||||| ||||||||||| |||||||| ||||| ||||||    
T  50398844 catcccagactgctttcaggattgccgactgaccctacaaaccaacacgagtctttccaacgtgttttgtcctcacttgcacgtttaccg 50398933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 1645619 - 1645686
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    |||||||||||| || |||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  1645619 attgccaactgaccctacaaaccaacacgagtcttttcaacgtgttttgtcctcactcgcacgcttac 1645686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 7678472 - 7678561
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||||  |||| | ||||| |||||||||| |||| |||||||||| |||||||| ||||||||||||| |||||||    
T  7678472 catcccagactgctttcagcattgtcgactgaccccacaaacctacacgagtcttttcagcgtgttttgtcctcactcgcacacttaccg 7678561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 3169476 - 3169408
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttacc 89  Q
    |||||||||||| || |||||||||||| ||| ||||||||||||||| ||||||||||||||||||||    
T  3169476 attgccaactgaccctacaaaccaacacgagtattttcaacgtgttttgtcctcactcgcacgcttacc 3169408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 23350136 - 23350220
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    |||||||||||||||  |||||| ||||| ||||||||||||||| ||||||||||  ||||||| ||||||||| |||||||||    
T  23350136 cccagactgctttcagaattgccgactgaccccacaaaccaacacgagtcttttcagtgtgttttgtcctcactcacacgcttac 23350220  T

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Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 14571545 - 14571615
Alignment:
Q  8 gactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactc 78  Q
    ||||||||||| |||| || ||||| ||||||||||||||| ||||||||||||||||||| |||||||||    
T  14571545 gactgctttcaggattcccgactgaccccacaaaccaacacgagtcttttcaacgtgttttgtcctcactc 14571615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 14572007 - 14572089
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    |||| |||||||||| ||||||| ||||| ||| ||||||||||| |||||||||| |||||||| ||||||||| |||||||    
T  14572007 cccatactgctttcaggattgccgactgaccccgcaaaccaacacgagtcttttcaccgtgttttgtcctcactcacacgctt 14572089  T

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Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 49998923 - 49998837
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||| ||||||||||  |||||| ||||  ||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||    
T  49998923 cccaaactgctttcagaattgccgactgtccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacacttaccg 49998837  T

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Target: chr4; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 4127744 - 4127828
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||     |||||||||||||| |||||||||| |||||||| ||||||||| |||||||||||    
T  4127744 catcccagactgctttcaagattgccgac-----ccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcacacgcttaccg 4127828  T

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Target: chr4; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 50398388 - 50398477
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||| ||||||||||||| ||||||| ||||| || |||||||||||| ||||||| ||  || |||| |||||||||||||||||||||    
T  50398388 catctcagactgctttcaggattgccgactgaccctacaaaccaacacgagtctttccagtgtattttgtcctcactcgcacgcttaccg 50398477  T

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Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 8467688 - 8467748
Alignment:
Q  26 caactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    ||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  8467688 caactgaccccacaaaccaacacgagtcttttcaacgtgttttgtcctcactcgcatgctt 8467748  T

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Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 23943119 - 23943181
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| || |||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  23943119 actgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 23943181  T

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Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 7381537 - 7381468
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||| ||||| || ||||||||||||  ||||||||| |||||||| |||||||||||||||||||||    
T  7381537 attgccgactgaccctacaaaccaacacgggtcttttcagcgtgttttgtcctcactcgcacgcttaccg 7381468  T

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Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 27578317 - 27578392
Alignment:
Q  11 tgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    |||||||| |||||   ||||||||||||||||| ||| |||||||||  |||||||| |||||||||||||||||    
T  27578317 tgctttcaggattgttgactgatcccacaaaccatcacgagtcttttctgcgtgttttgtcctcactcgcacgctt 27578392  T

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Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 31817707 - 31817792
Alignment:
Q  5 ccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccgc 91  Q
    |||||||||||||| ||||||  ||||||||| ||||||||||| ||||  |||||| || ||| ||||||||||||||||| ||||    
T  31817707 ccagactgctttcaggattgctgactgatccctcaaaccaacacgagtc-attcaacatgatttgtcctcactcgcacgctttccgc 31817792  T

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Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 44470752 - 44470814
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| || |||||||||||| ||||||| || |||||||| |||||||||||||||||||||    
T  44470752 actgaccctacaaaccaacacgagtctttccagcgtgttttgtcctcactcgcacgcttaccg 44470814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 4414257 - 4414325
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttacc 89  Q
    |||||| ||||| || |||||||||||| ||||||||||  ||||||| |||| |||||||||||||||    
T  4414257 attgccgactgaccctacaaaccaacacgagtcttttcagtgtgttttgtcctgactcgcacgcttacc 4414325  T

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Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Original strand, 23942675 - 23942725
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    ||||||||||||  ||| |||||||||||||| ||||||||||||||||||    
T  23942675 acaaaccaacacgggtcctttcaacgtgttttgtcctcactcgcacgctta 23942725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 50399394 - 50399336
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttca 59  Q
    |||| ||||||||||||| ||||||| ||||| || |||||||||||| ||||||||||    
T  50399394 catcgcagactgctttcaggattgccgactgaccctacaaaccaacacgagtcttttca 50399336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 13265926 - 13265857
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttct 70  Q
    |||| ||||||||||||| |||| || ||||| | ||||||| ||||| |||||||||| ||||||||||    
T  13265926 catctcagactgctttcaggattaccgactgaccgcacaaactaacacgagtcttttcagcgtgttttct 13265857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 27578139 - 27578218
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacg 83  Q
    ||||||||||| |||||| |||| || |||   || |||| ||||||| |||||||||| |||||||| ||||||||||||||    
T  27578139 catcccagactcctttcaggattaccgact---cctacaacccaacacgagtcttttcagcgtgttttgtcctcactcgcacg 27578218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 31817021 - 31817073
Alignment:
Q  34 cccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    ||||||||||| ||| |||||||||||| |||||| |||||||||| ||||||    
T  31817021 cccacaaaccagcacgagtcttttcaacatgttttgtcctcactcgtacgctt 31817073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 14645820 - 14645765
Alignment:
Q  180 ttcaaccgtaggaaatcatcaattcggcaaagtagaggtatgggggagtctctatt 235  Q
    |||||| || |||| |||||||||||| ||| |||||||| |||||||||||||||    
T  14645820 ttcaactgtgggaagtcatcaattcggaaaactagaggtaagggggagtctctatt 14645765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 9423748 - 9423794
Alignment:
Q  41 accaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    |||||||| |||||||||| |||||||| |||||||||||| |||||    
T  9423748 accaacacgagtcttttcagcgtgttttgtcctcactcgcatgctta 9423794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 21067545 - 21067483
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| || |||||| ||||| ||||||||||  ||||||| ||| |||||||||||||||||    
T  21067545 actgacccaacaaactaacacgagtcttttcagtgtgttttgtccccactcgcacgcttaccg 21067483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 44471202 - 44471264
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| || |||||||||||| ||||||| || | |||||| ||||||||||| |||||||||    
T  44471202 actgaccctacaaaccaacacgagtctttccagcatgttttgtcctcactcgcccgcttaccg 44471264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 53996007 - 53996053
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctc 74  Q
    ||||| || |||||||||||| ||||||||||||||||||| |||||    
T  53996007 actgaccctacaaaccaacacgagtcttttcaacgtgttttgtcctc 53996053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 10668924 - 10668887
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaa 41  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  10668924 cccagactgctttcaggattgccaactgaccccacaaa 10668887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 53854733 - 53854786
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| |||||| |||||||||||||| |||| || ||||||||||| ||||||    
T  53854733 acaaatcaacacgagtcttttcaacgtattttgtcatcactcgcacgtttaccg 53854786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 14820444 - 14820355
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||||| |||||||| |||||||| ||| ||||||||    
T  14820444 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcacttgcatgcttaccg 14820355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 14814239 - 14814150
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||||  |||||| ||| | ||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||    
T  14814239 catcccagactgctttcagtattgccgactaaccccacaaaccaacacgagtcttttcagcgtgttttgtcttcactcgcacgcttaccg 14814150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 28562027 - 28561946
Alignment:
Q  9 actgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||| |||| || ||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  28562027 actgctttcaagattaccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 28561946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 32227077 - 32227166
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||||  |||| | ||||| ||||||||||||||| ||||||||||| ||||||| ||||||||||||| |||||||    
T  32227077 catcccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcaatgtgttttttcctcactcgcacacttaccg 32227166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 32386595 - 32386678
Alignment:
Q  6 cagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttacc 89  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||| |||||||| | |||||||| |||||||||| |||||||||    
T  32386595 cagactgctttcaagattgccgactgaccccacaaaccaacacgagtctttttagcgtgttttgtcctcactcggacgcttacc 32386678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 41473823 - 41473744
Alignment:
Q  9 actgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    |||||||||||||||| | ||||| |||||||||||||||  ||||||||| |||||||| |||||||||||||||||||    
T  41473823 actgctttcacgattggcgactgaccccacaaaccaacacgggtcttttcagcgtgttttgtcctcactcgcacgcttac 41473744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8067570 - 8067484
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    |||||||||||||||| | ||||||| | ||| | ||||||||||||| |||||||||| |||||||| ||||||||||||||||||    
T  8067570 catcccagactgcttttaggattgccgattgacctcacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgctta 8067484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 50348036 - 50347950
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    ||||||||||||||||||  |||| | ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||| ||||    
T  50348036 catcccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacactta 50347950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 11179890 - 11179979
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||||  |||| | ||||| ||||||||||||||| |||||||||| |||||||| ||||||||| ||| |||||||    
T  11179890 catcccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcacacacttaccg 11179979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 13149955 - 13150044
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||||  |||| | ||||| ||||||||||||||| |||||||||| |||||||| |||||||| |||| |||||||    
T  13149955 catcccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcacttgcacacttaccg 13150044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 13150410 - 13150499
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||||  |||| | ||||| |||||||| |||||| |||||||||| |||||||| ||||||||||||| |||||||    
T  13150410 catcccagactgctttcagcattgtcgactgaccccacaaatcaacacgagtcttttcagcgtgttttgtcctcactcgcacacttaccg 13150499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 31284132 - 31284217
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    ||||||||| |||||||| ||||||| ||||| ||||||||||||||| |||||||||  |||||||| ||| |||||||||||||    
T  31284132 catcccagattgctttcatgattgccgactgaccccacaaaccaacacgagtcttttcggcgtgttttgtccccactcgcacgctt 31284217  T

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Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 39653454 - 39653365
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||| |  |||| | ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||| |||||||    
T  39653454 catcccagactgcttttagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacacttaccg 39653365  T

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Target: chr3; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 2911345 - 2911285
Alignment:
Q  30 tgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  2911345 tgatcctacaaaccaacacgagtcttttcaacgtgttttgtcctcactcgcacgcttaccg 2911285  T

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Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 16811215 - 16811128
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    ||||||||| |||||||| ||||||| || || ||||||||||||||| | |||||||| ||| |||| |||||||||||||||||||    
T  16811215 catcccagattgctttcaggattgccgaccgaccccacaaaccaacacgaatcttttcagcgtattttgtcctcactcgcacgcttac 16811128  T

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Target: chr3; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 16811669 - 16811585
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    |||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||||||  | ||||| |||||||||||| |||||    
T  16811669 catcccagactgctttcaggattgccgactgaccccacaaaccaacacgagtcttttca--gcgttttgtcctcactcgcatgctta 16811585  T

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Target: chr3; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 32227790 - 32227704
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    ||||||||||||||||||  |||| | ||||| || |||||||||||| ||||||||||| ||||||| ||||||||||||| ||||    
T  32227790 catcccagactgctttcagcattgtcgactgaccctacaaaccaacacgagtcttttcaatgtgttttttcctcactcgcacactta 32227704  T

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Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 27187188 - 27187272
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtg-ttttctcctcactcgcacgctta 87  Q
    ||||||||| |||||  |||||| ||||| ||||||||||||||| |||||||||| |||| |||| ||||||||||||||||||    
T  27187188 cccagactgttttcagaattgccgactgaccccacaaaccaacacgagtcttttcagcgtgtttttgtcctcactcgcacgctta 27187272  T

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Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 25230131 - 25230193
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| || |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||    
T  25230131 actgaccctacaaaccaacactagtctttccaacgtgttttgtcctcactcgctcgcttaccg 25230193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 25237718 - 25237780
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| || |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||    
T  25237718 actgaccctacaaaccaacactagtctttccaacgtgttttgtcctcactcgctcgcttaccg 25237780  T

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Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 25248402 - 25248312
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtctttt-caacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||| | ||||| | ||| | | |||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||    
T  25248402 catcccagactgcttttaggattgtcgactaacctcacaaatcaacacgagtctttttcaacgtgttttgtcctcactcgcacgcttaccg 25248312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 4067236 - 4067304
Alignment:
Q  21 attgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttacc 89  Q
    |||||| ||||| || ||||||||||||| ||||||||| |||||||| |||||||| |||||||||||    
T  4067236 attgccgactgaccctacaaaccaacactggtcttttcagcgtgttttgtcctcacttgcacgcttacc 4067304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 180 - 287
Target Start/End: Original strand, 18534443 - 18534550
Alignment:
Q  180 ttcaaccgtaggaaatcatcaattcggcaaag-tagaggtatgggggagtctctatttaccttaacggttgtatgaacatatgaatagtgaaggattttt 278  Q
    ||||||| ||||||||||||||||  |||||  |||||||| ||||||||||||||| ||| ||| | |||||||||||||||  ||||||||| |||||    
T  18534443 ttcaaccataggaaatcatcaatttcgcaaaactagaggtaagggggagtctctattcaccataaggattgtatgaacatatg-gtagtgaagggttttt 18534541  T
Q  279 atttgtttt 287  Q
     ||| ||||    
T  18534542 ttttttttt 18534550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 3593138 - 3593063
Alignment:
Q  185 ccgtaggaaatcatcaattcggcaaagtagaggtatgggg-gagtctctatttaccttaacggttgtatgaacata 259  Q
    |||||||||||||||||||||||||| |||||||| |||| ||||||||||| | | ||| |||||||||| ||||    
T  3593138 ccgtaggaaatcatcaattcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcata 3593063  T

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Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 18705557 - 18705638
Alignment:
Q  191 gaaatcatcaatt-cggcaaagtagaggtatgggggagtctctatttaccttaacggttgtatgaacatatgaatagtgaagg 272  Q
    ||||||||||||| ||  ||| |||||||||||||||||||||||||||| ||| ||||||||||||||| |  |||||||||    
T  18705557 gaaatcatcaatttcgtaaaactagaggtatgggggagtctctatttaccataa-ggttgtatgaacataagggtagtgaagg 18705638  T

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Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 25238576 - 25238628
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttacc 89  Q
    |||||||||||| |||||||||| |||||||| |||||||||||| |||||||    
T  25238576 acaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcatgcttacc 25238628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 25239010 - 25239070
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    ||||| || |||||||||||| |||||||||| |||||||| ||||||||| |||||||||    
T  25239010 actgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctcactcacacgcttac 25239070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 37045295 - 37045236
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    ||||| || |||||||||||| |||||||||| |||||||| |||||||||||| |||||    
T  37045295 actgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcatgctta 37045236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 20885000 - 20885059
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    ||||| || |||||||||||| |||||||||| |||||||| |||| ||| |||||||||    
T  20885000 actgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctaacttgcacgctta 20885059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 7477454 - 7477396
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    ||||| |||||| |||||||  ||||||||||||||| ||| | |||||||||||||||    
T  7477454 actgaccccacataccaacatgagtcttttcaacgtgctttgttctcactcgcacgctt 7477396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 7494144 - 7494086
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    ||||| |||||| |||||||  ||||||||||||||| ||| | |||||||||||||||    
T  7494144 actgaccccacataccaacatgagtcttttcaacgtgctttgttctcactcgcacgctt 7494086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 25230588 - 25230650
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| || |||||||||||| ||||||| || ||||||||   |||||||||||||||||||    
T  25230588 actgaccctacaaaccaacacgagtctttccagcgtgttttgatctcactcgcacgcttaccg 25230650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 25238175 - 25238237
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| || |||||||||||| ||||||| || ||||||||   |||||||||||||||||||    
T  25238175 actgaccctacaaaccaacacgagtctttccagcgtgttttgatctcactcgcacgcttaccg 25238237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 30529939 - 30529889
Alignment:
Q  38 caaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    ||||||||||| |||||||| | |||||||| |||||||||||| ||||||    
T  30529939 caaaccaacacaagtctttttagcgtgttttgtcctcactcgcatgcttac 30529889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 53150695 - 53150753
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    ||||| ||||||||| ||||  |||||||||||| |||||| ||||||||||| |||||    
T  53150695 actgaccccacaaactaacatgagtcttttcaacatgttttgtcctcactcgcccgctt 53150753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 24177926 - 24177987
Alignment:
Q  221 gggggagtctctatttaccttaacggttgtatgaacatatgaatagtgaaggatttttattt 282  Q
    ||||||||||||||| ||| ||| | || ||||||||||||  ||||||||| |||||||||    
T  24177926 gggggagtctctattcaccataaggattctatgaacatatgggtagtgaagggtttttattt 24177987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 25230989 - 25231030
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactc 78  Q
    |||||||||||| |||||||||| |||||||| |||||||||    
T  25230989 acaaaccaacacgagtcttttcagcgtgttttgtcctcactc 25231030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 30993302 - 30993342
Alignment:
Q  221 gggggagtctctatttaccttaacggttgtatgaacatatg 261  Q
    ||||||||||||||| ||| ||| |||||||||||||||||    
T  30993302 gggggagtctctattcaccataagggttgtatgaacatatg 30993342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 162990 - 163079
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||| ||||| ||||||| ||||  ||||||||||||||| |||||||||| |||||||| |||||||||| ||||||||||    
T  162990 catcccagactgttttcaggattgccgactggccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgaacgcttaccg 163079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 162533 - 162620
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtc-ttttcaacgtgttttctcctcactcgcacgctta 87  Q
    ||||||| |||||||||| ||||||| ||||| ||||||||||||||| |||| |||||| |||||||| ||||||||||||||||||    
T  162533 catcccatactgctttcaggattgccgactgaccccacaaaccaacacgagtctttttcagcgtgttttgtcctcactcgcacgctta 162620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 163361 - 163274
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttac 88  Q
    ||||||||||  |||||| ||||| | || || || |||||||||||| |||||||||| |||||||| |||||||||||||||||||    
T  163361 catcccagacgactttcaggattgtcgacagaccctacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttac 163274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 69671 - 69756
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    ||||||| |||||||||| ||||||| ||||| || |||||||||||| |||||||| | |||| ||| || |||||| |||||||    
T  69671 catcccaaactgctttcaggattgccgactgaaccaacaaaccaacacgagtctttttagcgtggtttgtcatcactcacacgctt 69756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 107319 - 107408
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||||  || ||| ||||| ||||||||||||||| |||||||||| | |||||| |||||||||||||||||||||    
T  107319 catcccagactgctttcagaatagccgactgaccccacaaaccaacacgagtcttttcagcatgttttgtcctcactcgcacgcttaccg 107408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 1911 - 1834
Alignment:
Q  184 accgtaggaaatcatcaattcggcaaagtagaggtatg-ggggagtctctatttaccttaacggttgtatgaacatat 260  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| ||| ||||||||||| ||||    
T  1911 accgtaggaaatcatcaattctgcaaactagaggtatggggggagtctctatttaccataagggttgtatgaatatat 1834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 3032 - 2943
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| ||||||||||||  |||||| ||||| |||||||| |||||| |||||||||| |||||||| ||||||||||||| |||||||    
T  3032 catccgagactgctttcagcattgccgactgaccccacaaatcaacacgagtcttttcagcgtgttttgtcctcactcgcacacttaccg 2943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 2066 - 2155
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||  |||| | ||||| | ||||| ||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  2066 catcccagacaacttttaggattgtcgactgaccccacaaaccaacacgagtcttttcaatgtgttttgtcctcactcgcacgcttaccg 2155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 154592 - 154503
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||||  |||| | ||||| |||||||| |||||| |||||||||| |||||||| ||||||||||||| |||||||    
T  154592 catcccagactgctttcagcattgtcgactgaccccacaaatcaacacgagtcttttcagcgtgttttgtcctcactcgcacacttaccg 154503  T

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Target: scaffold0002; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 155047 - 154958
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||||  |||| | ||||| ||||||||||||||| |||||||||| |||||||| |||||||| |||| |||||||    
T  155047 catcccagactgctttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactagcacacttaccg 154958  T

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Target: scaffold0024 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 106010 - 105922
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttacc 89  Q
    |||| |||||||||||||  |||||| ||||| || | |||||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  106010 catctcagactgctttcagaattgccgactgaccctataaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttacc 105922  T

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Target: scaffold0018 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 10589 - 10501
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttacc 89  Q
    |||||| |||| ||||||  |||| | ||||| ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  10589 catccccgactactttcagcattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttacc 10501  T

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Target: scaffold0005 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 245369 - 245287
Alignment:
Q  4 cccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctt 86  Q
    |||| |||||||||| ||||||| ||||| ||| ||||||||||| |||||||||| |||||||| ||||||||| |||||||    
T  245369 cccatactgctttcaggattgccgactgaccccgcaaaccaacacgagtcttttcaccgtgttttgtcctcactcacacgctt 245287  T

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Target: scaffold0005; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 245831 - 245761
Alignment:
Q  8 gactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactc 78  Q
    ||||||||||| |||| || ||||| ||||||||||||||| ||||||||||||||||||| |||||||||    
T  245831 gactgctttcaggattcccgactgaccccacaaaccaacacgagtcttttcaacgtgttttgtcctcactc 245761  T

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Target: scaffold0005; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 171470 - 171525
Alignment:
Q  180 ttcaaccgtaggaaatcatcaattcggcaaagtagaggtatgggggagtctctatt 235  Q
    |||||| || |||| |||||||||||| ||| |||||||| |||||||||||||||    
T  171470 ttcaactgtgggaagtcatcaattcggaaaactagaggtaagggggagtctctatt 171525  T

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Target: scaffold1519 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 1557 - 1646
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||||||||| ||||  | ||||| ||||||||||||||| |||||||| | |||||||| ||||||||| || ||||||||    
T  1557 catcccagactgctttcaggattatcgactgaccccacaaaccaacacgagtctttttagcgtgttttgtcctcactcacatgcttaccg 1646  T

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Target: scaffold0277 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 14558 - 14647
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||||||||||||  |||| |  |||| ||||||||||||||| |||||||||| | |||||| ||||||||||||| |||||||    
T  14558 catcccagactgctttcagcattgtcggctgaccccacaaaccaacacgagtcttttcagcatgttttgtcctcactcgcacacttaccg 14647  T

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Target: scaffold0499 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 1934 - 1996
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| ||||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||    
T  1934 actgaccccacaaaccaacacgagtcttttcagcgtattttgtcctcactcgcacgcttaccg 1996  T

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Target: scaffold0217 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 600 - 514
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgctta 87  Q
    ||||| ||||| |||| | ||||||| ||||| ||||||||||||||| |||||||||| |||||||| ||||||||| || |||||    
T  600 catccgagactacttttaggattgccgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcacatgctta 514  T

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Target: scaffold0094 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 48325 - 48227
Alignment:
Q  180 ttcaaccgtaggaaatcatcaattcggcaaagtagaggt-atgggggagtctctatttaccttaacggttgtatgaacatatgaatagtgaaggatttt 277  Q
    |||||||||||||| |||||||||||| ||| ||||||| | ||||||||||||||| ||| ||| | |||||||| ||||||  ||||||||| ||||    
T  48325 ttcaaccgtaggaattcatcaattcggaaaactagaggtaaggggggagtctctattcaccataaggattgtatgatcatatgggtagtgaaggctttt 48227  T

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Target: scaffold0333 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 4823 - 4761
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| || |||||||||||| |||||||||| |||||||| ||||||||||||| |||||||    
T  4823 actgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacacttaccg 4761  T

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Target: scaffold0333; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 5283 - 5221
Alignment:
Q  28 actgatcccacaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| || |||||||||||| |||||||||| |||||||| ||||||||||||| |||||||    
T  5283 actgaccctacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacacttaccg 5221  T

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Target: scaffold0333; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 5377 - 5323
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtg-ttttctcctcactcgcacgcttaccg 90  Q
    |||||||||||| |||||||||| |||| |||| ||||||||||||| |||||||    
T  5377 acaaaccaacacgagtcttttcagcgtgtttttgtcctcactcgcacacttaccg 5323  T

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Target: scaffold0047 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 17493 - 17543
Alignment:
Q  40 aaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  17493 aaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccg 17543  T

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Target: scaffold0047; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 18027 - 18080
Alignment:
Q  37 acaaaccaacactagtcttttcaacgtgttttctcctcactcgcacgcttaccg 90  Q
    ||||| |||||| |||||||||| |||||| | |||||||||||||| ||||||    
T  18027 acaaatcaacacgagtcttttcagcgtgttgtgtcctcactcgcacgtttaccg 18080  T

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Target: scaffold0065 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 62968 - 63030
Alignment:
Q  6 cagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgtttt 68  Q
    |||||| |||||| ||||||| ||||| |||||||||||| || |||||||||| ||||||||    
T  62968 cagactactttcaggattgccgactgaccccacaaaccaatacgagtcttttcagcgtgtttt 63030  T

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Target: scaffold0065; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 67219 - 67275
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtctttt 57  Q
    |||| ||||||||||||| ||||||| | ||| ||||||||||||||| ||| ||||    
T  67219 catcacagactgctttcaggattgccgattgaccccacaaaccaacacaagtgtttt 67275  T

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Target: scaffold0442 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 65 - 1
Alignment:
Q  1 catcccagactgctttcacgattgccaactgatcccacaaaccaacactagtcttttcaacgtgt 65  Q
    ||||||| |||||||| | ||||||| ||||| || |||||||||||| |||||||||| |||||    
T  65 catcccaaactgcttttaggattgcctactgaccctacaaaccaacacgagtcttttcagcgtgt 1  T

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Target: scaffold0088 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 270
Target Start/End: Original strand, 35516 - 35604
Alignment:
Q  184 accgtaggaaatcatcaa-ttcggcaaagtagaggtatgggg-gagtctctatttaccttaacggttgtatgaacatatgaatagtgaa 270  Q
    |||||||||| ||||||| |||| |||| |||||||| |||| ||||||||||| | | ||| |||||||| ||||||||  |||||||    
T  35516 accgtaggaactcatcaaattcgacaaactagaggtaaggggggagtctctattcagcgtaagggttgtatcaacatatgggtagtgaa 35604  T

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