View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14034_low_16 (Length: 415)
Name: NF14034_low_16
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 37256641 - 37256949
Alignment:
| Q |
13 |
aaaatatgctttggtgagtgacgagaaaatcagccgttagtttcaattcattctagattttaacaggtgagtaatcacactcctttaacccttccatggt |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37256641 |
aaaatatgctttggtcagtgacgagaaaatcagccgttagtttcaattcattctagattttaacaggtgagtaatcacac-cctttaacccttccatggt |
37256739 |
T |
|
| Q |
113 |
atgtatgttgtgattttgaaaagaattacaatttatttgaatgctttaattgatggaaacctaaccctatcaaattggggattttctatgaatttcaatt |
212 |
Q |
| |
|
|| || | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37256740 |
atac-tgat----ttttgaaaagaattacaatttatttgaatgctttaattgatgaaaacctaaccctatcaaattggggatttt-tatgaatttcaatt |
37256833 |
T |
|
| Q |
213 |
atttagtttataagttactgatgtatttgtttctacctgctgatcgagtttgggattttctgataaatacatatatgaagtacgttagactacaggggga |
312 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
37256834 |
atttagtttatgagttactgatgtatttgtttctacctgctgatcgagtttgggattttctgataaatacatatatgaagtacgttagactagaggggga |
37256933 |
T |
|
| Q |
313 |
tgctttgatccataga |
328 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37256934 |
tgctttgatccataga |
37256949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 330 - 391
Target Start/End: Original strand, 37257286 - 37257347
Alignment:
| Q |
330 |
tataattggattaggcagaaggaagctatactattatctatagtttcaccttttaactgaga |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37257286 |
tataattggattaggcagaaggaagctatactattatctatagtttcaccttttaactgaga |
37257347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 71 - 221
Target Start/End: Original strand, 1681168 - 1681309
Alignment:
| Q |
71 |
tttaacaggtgagtaatcacactcctttaacccttccatggtatgtatgttgtgattttgaaaagaattacaatttatttgaatgctttaattgatggaa |
170 |
Q |
| |
|
||||| |||||||||||||||| | |||||| |||||||||||| | ||||||||||||||||||||||||||||||||| |||| |||||| || |
|
|
| T |
1681168 |
tttaaaaggtgagtaatcacac-catttaactcttccatggtatat------tgattttgaaaagaattacaatttatttgaatgatttatttgatgaaa |
1681260 |
T |
|
| Q |
171 |
acctaaccctatcaaattggggattttctatgaatttcaattatttagttt |
221 |
Q |
| |
|
||||||| |||| |||||| |||| ||||||||||||||||||||||| |
|
|
| T |
1681261 |
acctaacactataaaattgcaaattt--tatgaatttcaattatttagttt |
1681309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 342
Target Start/End: Original strand, 25878915 - 25879055
Alignment:
| Q |
199 |
tatgaatttcaattatttagtttataagttactgatgtatttgtttctacctgctgatcgagtttgggattttctgataaatacatatatgaagtacgtt |
298 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| |||||| |||| |||| ||||| || | ||||||||||| ||| |||||||||| | | ||| |
|
|
| T |
25878915 |
tatgaatttcaattatttagtttctaagctactgctgtatt--tttc-acctactgatggattctgggattttcttatacatacatatatagtgcatgtt |
25879011 |
T |
|
| Q |
299 |
agactacagggggatgctttgatccatagattataattggatta |
342 |
Q |
| |
|
|| ||| | | |||||||||||||| ||||||| |||| ||||| |
|
|
| T |
25879012 |
agtctatatgtggatgctttgatccttagattagaatttgatta |
25879055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 24544127 - 24544197
Alignment:
| Q |
77 |
aggtgagtaatcacactcctttaacccttccatggtatgtatgttgtgattttgaaaagaattacaatttatttga |
152 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||| ||| ||||||||||| |
|
|
| T |
24544127 |
aggtgagtaatcacac-cctttaacccttccatggtatatat----tgatttttgaaagagttataatttatttga |
24544197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University