View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_19 (Length: 387)
Name: NF14034_low_19
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 6 - 387
Target Start/End: Original strand, 47332211 - 47332577
Alignment:
| Q |
6 |
aaagtagagatgcgtgtaagaatcaaacaattgttttaaaagttataattgaacaattatagaaaagaaaattacgaaagaacttcatcattttgaggca |
105 |
Q |
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| T |
47332211 |
aaagtagagatgcgtgtaagaatcaaacaattgttttaaaagttataattgaacaattctagaaaagaaaattacgaaagaacttcatcattttgaggca |
47332310 |
T |
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| Q |
106 |
ataataatactagtaataaagaaaaacaaatggtaaagtattataaagaacgtgtagaaagattcaataattgactccttatggctctcgtgtaaaaaca |
205 |
Q |
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| T |
47332311 |
ata---------------aagaaaaacaaatggtaaagtattataaagaacgtgtagaaagattcaataattgactccttatggctctcgtgtaaaaaca |
47332395 |
T |
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| Q |
206 |
aaggagttggagttggaggaacctagcaaacgctacaagtcaaattgatttggtgaacttagcttacctcttctgtctcacgcggctttatttttctatt |
305 |
Q |
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| T |
47332396 |
aaggagttggagttggaggaacctagcaaacgctacaagtcaaattgatttggtgaacttagcttacctcttttgtctcacgcggctttatttttctatt |
47332495 |
T |
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| Q |
306 |
tccttcaaagtctcaaatctccgcaagtctaaacacactaatttcgttgacctaacttattttgtgaaattacacacatatc |
387 |
Q |
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| T |
47332496 |
tccttcaaagtctcaaatctccgcaagtctaaacacactaatttcgttgacctaacttattttgtgaaattacacacatatc |
47332577 |
T |
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