View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_2 (Length: 693)
Name: NF14034_low_2
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 17 - 680
Target Start/End: Complemental strand, 43411389 - 43410737
Alignment:
| Q |
17 |
atatagtaacttcttacggtaaaaattcagactttaattctacaccttcttctgttagatttaatgcatgtttggttttacttttatatagatcaaaatt |
116 |
Q |
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| T |
43411389 |
atatagtaacttcttacggtaaaaattcagactttaattctacaccttcttctgttagatttaatgcatgtttggtttcacttttatatagatcaaaatt |
43411290 |
T |
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| Q |
117 |
aattccgacatatttagttgttattcagtagaaaatattatgaaaaatatgacatgtcattgaacgataaatacatatttatcaaat-tgactaaaattt |
215 |
Q |
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| T |
43411289 |
aattctgacatatttagttgttatttagtagaaaatattataaaaaatatgacatatcattgaacgatgaatacatatttatcaaatatgac-------- |
43411198 |
T |
|
| Q |
216 |
cagtaaatttcactgaatcatgttgctaactactactatacatatgtttgataaaaatggtgcagattacttgagtacacatatgaaaatttttctggtg |
315 |
Q |
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| T |
43411197 |
------atgtcactgaatcatgttgctaactactactatacatatgtttgataaaaatggtgcagattacttgagtacacatatgaaaaattttctggtg |
43411104 |
T |
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| Q |
316 |
tattttgtcatcaacagacagtccatggctatgcattgagctgtttggttaaggtattttatctctttggattgcaatcagaatcaacggacaatccatg |
415 |
Q |
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| T |
43411103 |
tattttgtcatcaacagacagtccatggctatgcattgagctgtttggttaaggtattttatctctttggattgtaatcagaatcaacggacaatccatg |
43411004 |
T |
|
| Q |
416 |
gccatgcattggattgtgatcataaaactaa--ttctctctttcacttatgcattttttcttaacatgtacaaaatgaacaaaaagctccgtaattatgt |
513 |
Q |
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| T |
43411003 |
gccatgcattggattgtgatcataaaactaattttctctcgttcacttatgcattttttcttaaaatgtacaaaatgaacaaaaagctcggtaattatgt |
43410904 |
T |
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| Q |
514 |
gacatagagagagagtaataattttcaatcaaatgtatgaaacgatgattacccgctcggtgtcccactggccaatgttatataatattggcatcccaat |
613 |
Q |
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| T |
43410903 |
gacatagagagagagtaataattttcaatcaaatgtatgaaacgatgattacccgctcggtgtctcaatggccaatgttatataatattgacatcccaat |
43410804 |
T |
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| Q |
614 |
agtgcacaaatggtgtctgtgtttgcacctctgtgtgggtttgcaatacttgtccctatctttgcct |
680 |
Q |
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| T |
43410803 |
aatgcacaaacggtgttcgtgtttgtacctcggtgtgggtttgcaatacttgtccctatttttgcct |
43410737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 582 - 630
Target Start/End: Complemental strand, 34955117 - 34955069
Alignment:
| Q |
582 |
tggccaatgttatataatattggcatcccaatagtgcacaaatggtgtc |
630 |
Q |
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| T |
34955117 |
tggccaatgttatataacattggtatcccaatggtacacaagtggtgtc |
34955069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 36861537 - 36861501
Alignment:
| Q |
84 |
atgtttggttttacttttatatagatcaaaattaatt |
120 |
Q |
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| T |
36861537 |
atgtttgattttacttttatatggatcaaaattaatt |
36861501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 582 - 630
Target Start/End: Complemental strand, 37811135 - 37811087
Alignment:
| Q |
582 |
tggccaatgttatataatattggcatcccaatagtgcacaaatggtgtc |
630 |
Q |
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| T |
37811135 |
tggccaatgttatataacattggtatcccaatggtacacaagtggtgtc |
37811087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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