View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_22 (Length: 365)
Name: NF14034_low_22
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 27244748 - 27245082
Alignment:
| Q |
1 |
taggcgattaataattacttttgttgtttaataatcaaccataattcttcaaaaataaatagaaaaatcttacacaaattattcattctttgtgcgtaga |
100 |
Q |
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| T |
27244748 |
taggcgactaataatttctttggttgtttaataatcaaccataatccttcaaaaataaatagaaaaatcttacaaaa--tattcattctttgtgtgtaga |
27244845 |
T |
|
| Q |
101 |
gaaagttgaaacaacaatagaaaacgcagaacaagtagcaaacattgtagaagaagtggctgaaagggtggacaagatggcagaaagaactgtaaagaat |
200 |
Q |
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| T |
27244846 |
gaaagttgaaacaacaatagaaaaagcagaacaagtagcaaacattgtggaagaagtggctgaaagggtggacaagatggcagaaagaactgcaaagaat |
27244945 |
T |
|
| Q |
201 |
cttcccaaaggaaaacgacgagttgttgctgaatttgttgaaaacgtagcagaagatgtagagaagattgcccaaaatgcagaagacgcattagaaaagg |
300 |
Q |
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| T |
27244946 |
cttcccaaaggaaaacgacgagttgttgctgaatttgttgaaaacgtagcagaagatgtagagaagattgctcaaaatgcagaagacgcattagaaaagg |
27245045 |
T |
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| Q |
301 |
tttgaatcaatgtttagatgatacatacttaccaatta |
338 |
Q |
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| T |
27245046 |
tttgaatcaatgtttagatgatacatac-taccaatta |
27245082 |
T |
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