View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14034_low_28 (Length: 351)
Name: NF14034_low_28
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 27929222 - 27929556
Alignment:
| Q |
1 |
caattattctttctttaaacatttatttttgctcaattgttttctttttgcaagtcccgttaattggcctaaactttgtcgctttttgaatttatttctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27929222 |
caattattctttctttaaacatttatttttgctcaattgttttctttttgcaagtcccgttatttggcctaaactttgtcgctttttgaatttatttctc |
27929321 |
T |
|
| Q |
101 |
gcctatctctggctgatgattaattgagttatcatcgaacaactttctattttctccatttcattgtgtttttactaatgttgtgattgaatgtccttga |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27929322 |
gcctatctctggctgatgattagttgagttatcatcgaacaactttctattttctccaattcattgtgtttttactaatgttgtgattgaatgtccttga |
27929421 |
T |
|
| Q |
201 |
caggtaccacagcaggaaaactcatttgattgtggcctctttttacttcattatctggagctcttcgtggctcaagttccatttgatttcaaccctttta |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27929422 |
cagataccacagcaggaaaactcatttgattgtggcctctttttgcttcattatctggagctcttcgtggctcaagttccatttgatttcaaccctttta |
27929521 |
T |
|
| Q |
301 |
caccaaccaagttgtccaactttgtaagtggtttt |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
27929522 |
caccaaccaagttgtccaactttgtaagtggtttt |
27929556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 28082615 - 28082281
Alignment:
| Q |
1 |
caattattctttctttaaacatttatttttgctcaattgttttctttttgcaagtcccgttaattggcctaaactttgtcgctttttgaatttatttctc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
28082615 |
caattattctttctttaaacatttctttttgctcaattgttttctttttgcaagtcccattatttggcctaaactttgtcgctttttgaatttatttctc |
28082516 |
T |
|
| Q |
101 |
gcctatctctggctgatgattaattgagttatcatcgaacaactttctattttctccatttcattgtgtttttactaatgttgtgattgaatgtccttga |
200 |
Q |
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|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |
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| T |
28082515 |
gcctatctctggctgatgattagttgagttatcatcgaacaactttctattttctccatttgattgtgcttttactaatgttgtgactgaatgtccttga |
28082416 |
T |
|
| Q |
201 |
caggtaccacagcaggaaaactcatttgattgtggcctctttttacttcattatctggagctcttcgtggctcaagttccatttgatttcaaccctttta |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| | | |
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| T |
28082415 |
caggtaccacagcaggaaaactcatttgattgtggcctctttttgcttcattatctagagctcttcgtggctcaagttccatttgatttcaaccctctga |
28082316 |
T |
|
| Q |
301 |
caccaaccaagttgtccaactttgtaagtggtttt |
335 |
Q |
| |
|
|| |||||| | ||||||||||||||||||||| |
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|
| T |
28082315 |
gactaaccaattgttccaactttgtaagtggtttt |
28082281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 83 - 335
Target Start/End: Original strand, 27935335 - 27935587
Alignment:
| Q |
83 |
tttttgaatttatttctcgcctatctctggctgatgattaattgagttatcatcgaacaactttctattttctccatttcattgtgtttttactaatgtt |
182 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
27935335 |
tttttgaatttattcctctcctatctctggctgatgattagttgagttatcatcgaacaactttctattttctccatttgattgtgcttttactaatgtt |
27935434 |
T |
|
| Q |
183 |
gtgattgaatgtccttgacaggtaccacagcaggaaaactcatttgattgtggcctctttttacttcattatctggagctcttcgtggctcaagttccat |
282 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||| | | | || |||||| |
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| T |
27935435 |
gtgactgaatgtccttgacaggtaccacagcaggaaaacaaatttgattgtggcctctttttacttcattatctagagcgcttcctagatgaaattccat |
27935534 |
T |
|
| Q |
283 |
ttgatttcaacccttttacaccaaccaagttgtccaactttgtaagtggtttt |
335 |
Q |
| |
|
||||||||||||||| | || || |||||| ||||||||||||||||||||| |
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| T |
27935535 |
ctgatttcaaccctttgatactaatcaagttctccaactttgtaagtggtttt |
27935587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 335
Target Start/End: Original strand, 46163458 - 46163595
Alignment:
| Q |
198 |
tgacaggtaccacagcaggaaaactcatttgattgtggcctctttttacttcattatctggagctcttcgtggctcaagttccatttgatttcaaccctt |
297 |
Q |
| |
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|||||| | |||||||| |||||||||| |||||||||||||||| | || || || || ||||||||| | ||| ||| ||| || |||||| || | |
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| T |
46163458 |
tgacagttgccacagcaagaaaactcatatgattgtggcctctttctgctgcactacctagagctcttccttgctgaagctcctcttactttcaatccat |
46163557 |
T |
|
| Q |
298 |
ttacaccaaccaagttgtccaactttgtaagtggtttt |
335 |
Q |
| |
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| | | ||||||||| ||||| ||||||||| ||||| |
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| T |
46163558 |
tcaaagtaaccaagttttccaattttgtaagtcgtttt |
46163595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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