View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14034_low_3 (Length: 675)
Name: NF14034_low_3
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_3 |
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| [»] scaffold0016 (2 HSPs) |
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| [»] scaffold0189 (2 HSPs) |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 7623 - 7932
Alignment:
| Q |
1 |
tgatgaaacttccgtgtgagttttggaggaagggttgtattagtaaattcagttcatgctacaagtccaatattagatatgtctctcaacaaaatgttga |
100 |
Q |
| |
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|||||||||| || ||| |||||||||||||||||||| || |||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||| |
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| T |
7623 |
tgatgaaactaccttgttagttttggaggaagggttgtgttgttaaattcagttcttgcttcaattccaatattagatatgtctctcttcaaaatgttga |
7722 |
T |
|
| Q |
101 |
tagctttgtggnnnnnnnttgagcaaagccaaatgaactttttgtggggcgggacaacgattacatttactcaaatatttcctggaatgacgattaggtt |
200 |
Q |
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| ||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |
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| T |
7723 |
tggctttgtggaaaaaa-ttgtgcaaatccaaatgaattttttgtggggcgggacaacgattacattttctcagatatttcctggaatgacaattaggtt |
7821 |
T |
|
| Q |
201 |
gttgaaacaatcaaatccatctcttgacaattgtttat-gggaaaacattatggcaattagtgtctcttttacgagtggtttataaacctgatggatcgt |
299 |
Q |
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||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
7822 |
gttgaaacaatcaaatcgatctcttgacaattgtttctggggaaaacattatggcaattagtgtctcttttacgagtggtttatgaacccgatggatcgt |
7921 |
T |
|
| Q |
300 |
ttgattagata |
310 |
Q |
| |
|
||||||||||| |
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|
| T |
7922 |
ttgattagata |
7932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 60451 - 60352
Alignment:
| Q |
315 |
gatgcacaaacgcggctgagatcctccgtgtcgccgtctccgacgcggttccgactcggacgcgcgtacgaaaggggtacgattcgcgttagacgcggat |
414 |
Q |
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||||||| ||||||| |||||| |||||||||||||||||| ||||||||||| ||||||||||||||| | | ||||||||||||| |||||||||| |
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| T |
60451 |
gatgcacggacgcggccgagatctgccgtgtcgccgtctccgatgcggttccgacacggacgcgcgtacgacacgcgtacgattcgcgtcagacgcggat |
60352 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 23384845 - 23384536
Alignment:
| Q |
1 |
tgatgaaacttccgtgtgagttttggaggaagggttgtattagtaaattcagttcatgctacaagtccaatattagatatgtctctcaacaaaatgttga |
100 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||||||| || |||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||| |
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| T |
23384845 |
tgatgaaactaccttgttagttttggaggaagggttgtgttgttaaattcagttcttgcttcaattccaatattagatatgtctctcttcaaaatgttga |
23384746 |
T |
|
| Q |
101 |
tagctttgtggnnnnnnnttgagcaaagccaaatgaactttttgtggggcgggacaacgattacatttactcaaatatttcctggaatgacgattaggtt |
200 |
Q |
| |
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| ||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| |
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| T |
23384745 |
tggctttgtggaaaaaa-ttgtgcaaatccaaatgaattttttgtggggcgggacaacgattacattttctcagatatttcctggaatgacaattaggtt |
23384647 |
T |
|
| Q |
201 |
gttgaaacaatcaaatccatctcttgacaattgtttat-gggaaaacattatggcaattagtgtctcttttacgagtggtttataaacctgatggatcgt |
299 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
23384646 |
gttgaaacaatcaaatcgatctcttgacaattgtttctggggaaaacattatggcaattagtgtctcttttacgagtggtttatgaacccgatggatcgt |
23384547 |
T |
|
| Q |
300 |
ttgattagata |
310 |
Q |
| |
|
||||||||||| |
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|
| T |
23384546 |
ttgattagata |
23384536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 566 - 672
Target Start/End: Complemental strand, 40174264 - 40174158
Alignment:
| Q |
566 |
cttttccaccaccacacctcttccgatgccaccttctgcttccttcccttcttcttggttctaatttcatggcttttattgtaatcgccatcgccgtctc |
665 |
Q |
| |
|
||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
40174264 |
cttttccaccaccacaccttttccggtgccgccgtctgcttccttcccttcttcttggttctaatttcatggcttttattgtaatcgccgtcgccgtttc |
40174165 |
T |
|
| Q |
666 |
tgctcct |
672 |
Q |
| |
|
|| |||| |
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|
| T |
40174164 |
tgttcct |
40174158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 315 - 429
Target Start/End: Complemental strand, 40174516 - 40174402
Alignment:
| Q |
315 |
gatgcacaaacgcggctgagatcctccgtgtcgccgtctccgacgcggttccgactcggacgcgcgtacgaaaggggtacgattcgcgttagacgcggat |
414 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||| ||||||| || ||||||||||| ||||||||||||||| | ||||||||||||| |||||||||| |
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| T |
40174516 |
gatgcacagacgcggcagagatccgccgtgtcaccgtctctgatgcggttccgacacggacgcgcgtacgacacacgtacgattcgcgtcagacgcggat |
40174417 |
T |
|
| Q |
415 |
attaccatatccaac |
429 |
Q |
| |
|
||| || |||||||| |
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|
| T |
40174416 |
attgccgtatccaac |
40174402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 310 - 414
Target Start/End: Original strand, 33211874 - 33211978
Alignment:
| Q |
310 |
actcggatgcacaaacgcggctgagatcctccgtgtcgccgtctccgacgcggttccgactcggacgcgcgtacgaaaggggtacgattcgcgttagacg |
409 |
Q |
| |
|
|||| |||||||| |||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||||| | | ||||||||||||| ||||| |
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| T |
33211874 |
actctgatgcacagacgcggctgagatctgccgtgttgccgtctccaacgcggttccgacacggacgcgcgtacgacacgcgtacgattcgcgtcagacg |
33211973 |
T |
|
| Q |
410 |
cggat |
414 |
Q |
| |
|
|||| |
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|
| T |
33211974 |
tggat |
33211978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 450 - 506
Target Start/End: Complemental strand, 40174384 - 40174329
Alignment:
| Q |
450 |
ttggtcggacacggatccgacactgctctcgtgtaaacccgacgcggccaatcacag |
506 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||| |
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|
| T |
40174384 |
ttggtcggacacggatccgacactgctctggtgtaaa-ccgacacggccaatcacag |
40174329 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 566 - 672
Target Start/End: Complemental strand, 8005187 - 8005081
Alignment:
| Q |
566 |
cttttccaccaccacacctcttccgatgccaccttctgcttccttcccttcttcttggttctaatttcatggcttttattgtaatcgccatcgccgtctc |
665 |
Q |
| |
|
||||||||||||||||||| || || |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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|
| T |
8005187 |
cttttccaccaccacacctttttcggtgccgccgtctgcttccttcccttcttcttggttctaatttcatggcttttattgtaatcgccgtcgccgtttc |
8005088 |
T |
|
| Q |
666 |
tgctcct |
672 |
Q |
| |
|
|| |||| |
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|
| T |
8005087 |
tgttcct |
8005081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 8005431 - 8005361
Alignment:
| Q |
315 |
gatgcacaaacgcggctgagatcctccgtgtcgccgtctccgacgcggttccgactcggacgcgcgtacga |
385 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||||||| |
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|
| T |
8005431 |
gatgcacagacgcggctgagatccgccgtgccaccgtctccgacgcggttccgacacggacgcgcgtacga |
8005361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 505
Target Start/End: Complemental strand, 8005311 - 8005254
Alignment:
| Q |
447 |
catttggtcggacacggatccgacactgctctcgtgtaaacccgacgcggccaatcaca |
505 |
Q |
| |
|
||||||||| ||||||||||||||||| || | ||||||| |||||||||||||||||| |
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|
| T |
8005311 |
catttggtctgacacggatccgacactactttggtgtaaa-ccgacgcggccaatcaca |
8005254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 566 - 662
Target Start/End: Complemental strand, 28172 - 28076
Alignment:
| Q |
566 |
cttttccaccaccacacctcttccgatgccaccttctgcttccttcccttcttcttggttctaatttcatggcttttattgtaatcgccatcgccgt |
662 |
Q |
| |
|
|||||||| |||||||||| ||||| |||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
28172 |
cttttccatcaccacaccttttccggtgccgccgtctgcttccttcccttcttcttggttctaatttcatggtttttattgtaatcgccgtcgccgt |
28076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 315 - 506
Target Start/End: Complemental strand, 28425 - 28238
Alignment:
| Q |
315 |
gatgcacaaacgcggctgagatcctccgtgtcgccgtctccgacgcggttccgactcggacgcgcgtacgaaaggggtacgattcgcgttagacgcggat |
414 |
Q |
| |
|
|||||||| ||||||||||||| | ||||| |||||||||||||||||||||||| |||||| ||||||| | | ||||||||||||| |||||||||| |
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|
| T |
28425 |
gatgcacagacgcggctgagattcgccgtgccgccgtctccgacgcggttccgacatggacgcacgtacgacacgcgtacgattcgcgtcagacgcggat |
28326 |
T |
|
| Q |
415 |
attaccatatccaacnnnnnnnnnnnnnnnnncatttggtcggacacggatccgacactgctctcgtgtaaacccgacgcggccaatcacag |
506 |
Q |
| |
|
||| || |||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
28325 |
attgccgtatccaac---aaaaacaaaaaaaacatttggtcggacacggatccgagactgctctggtgtaaa-ccgacgcggccaatcacag |
28238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 38261680 - 38261610
Alignment:
| Q |
315 |
gatgcacaaacgcggctgagatcctccgtgtcgccgtctccgacgcggttccgactcggacgcgcgtacga |
385 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| ||| |||| |||||||||||| ||||| |||||||| |
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|
| T |
38261680 |
gatgcacagacgcggctgagatccgccgtgtcgacgtgtccggcgcggttccgacacggacatgcgtacga |
38261610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 412
Target Start/End: Complemental strand, 28182 - 28111
Alignment:
| Q |
341 |
cgtgtcgccgtctccgacgcggttccgactcggacgcgcgtacgaaaggggtacgattcgcgttagacgcgg |
412 |
Q |
| |
|
|||||| |||| |||| ||| |||||||||||||||||||| ||| | |||||||||||||| ||| |||| |
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|
| T |
28182 |
cgtgtcaccgtgtccggcgcagttccgactcggacgcgcgtgcgacactggtacgattcgcgtcagatgcgg |
28111 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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