View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14034_low_31 (Length: 332)
Name: NF14034_low_31
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_31 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 332
Target Start/End: Original strand, 7969299 - 7969624
Alignment:
| Q |
9 |
aatatacactaatgcaaagttgcaccacaatattagactgaggtatggacaaaagacagtaaaataaaaaggtgattttaactaagcctatttataaaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
7969299 |
aatatacactaatgcaaagttgcaccacaatattagactgaggtatggacaaaagacagtaaaataaaaaggtgaatttatctaagcctatttataaaaa |
7969398 |
T |
|
| Q |
109 |
-ggttaaagtagcaaaatagaacgttaataaccaagtttgtagtttccttagcaaatgctggcacctgacaaaa-tgagccgaaattcccatgtaatcta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
7969399 |
aggttaaagtagcaaaatagaacgttaataaccaagtttgtagtttccttagcaaatgctggcacctgacaaaaatgagccgaaattcccatgtaatcta |
7969498 |
T |
|
| Q |
207 |
cactgtccgaaccataaaggaaaaggacaataacatatactaattgccaaaaatatgaaagaccaaaagacgcattcttttcatcaaacatcgttgtcat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
7969499 |
cactgtccgaaccataaaggaaaaggacaataacatatactaattgccaaaaatatgaaagaccaaaagacacatttttttcatcaaacatcgttgtcat |
7969598 |
T |
|
| Q |
307 |
cgttatcatcaccaatgcatatcatt |
332 |
Q |
| |
|
| |||||||||||||||||||||||| |
|
|
| T |
7969599 |
cattatcatcaccaatgcatatcatt |
7969624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University