View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_32 (Length: 331)
Name: NF14034_low_32
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 8e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 120 - 317
Target Start/End: Complemental strand, 32120036 - 32119840
Alignment:
| Q |
120 |
acatttgtatcgaataaaatggnnnnnnnnttaaagatacatgacaaaataaaaagaaatagtgaaagagagacatggatacaatcataagcaatatgag |
219 |
Q |
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| T |
32120036 |
acatttgtatcgaataaaatggaaaaaaa-ttaaagatacatgacaaaataaaaagaaatagtgaaagagagacatggatacaatcataagcaatttgag |
32119938 |
T |
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| Q |
220 |
acctaaagttatctttcattagaggaaccatatgagactgagttggctaggtatcattttgcaaggaacctgcaaagaccatttcccaaccattattg |
317 |
Q |
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| T |
32119937 |
acctaaagttatctttcattagaggaaccatatgagactgagttggctaggtatcattttgcaaggaacctgcaaagaccatttcccaaccatcattg |
32119840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 32120175 - 32120039
Alignment:
| Q |
1 |
aatgaagagactcgtcgaaggccatatattgaggaattttagagaaaatatagtgtcctacatgtccttctagtcaaaattggcggtccgatatgatata |
100 |
Q |
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| T |
32120175 |
aatgaagagactcgtcgaagaccatatattgaagatttttaaagaaaatatagcgtcctacatgtccttctagtcaaaattggcggtccgatatgata-- |
32120078 |
T |
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| Q |
101 |
ttagtagtaactttttgttacatttgtatcgaataaaatg |
140 |
Q |
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| T |
32120077 |
-tagtactaactttttgttacatttgtattgaataaaatg |
32120039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 206 - 305
Target Start/End: Complemental strand, 26572707 - 26572608
Alignment:
| Q |
206 |
ataagcaatatgagacctaaagttatctttcattagaggaaccatatgagactgagttggctaggtatcattttgcaaggaacctgcaaagaccatttcc |
305 |
Q |
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| T |
26572707 |
ataagcaatttgagacctaatgttatctttcattagatgaacaatgtgagactgagttggctaggtattaatttgcaaggaacctgcaaagaccatttcc |
26572608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 38279001 - 38278953
Alignment:
| Q |
152 |
aaagatacatgacaaaataaaaagaaatagtgaaagagagacatggata |
200 |
Q |
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| T |
38279001 |
aaagatacatgataaaataaaaagaaatagtaaaggagagacattgata |
38278953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 38276886 - 38276852
Alignment:
| Q |
150 |
ttaaagatacatgacaaaataaaaagaaatagtga |
184 |
Q |
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| T |
38276886 |
ttaaatatacatgacaaaataaaaagaaatagtga |
38276852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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