View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_low_33 (Length: 323)

Name: NF14034_low_33
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_low_33
NF14034_low_33
[»] chr1 (4 HSPs)
chr1 (90-236)||(18431611-18431755)
chr1 (100-242)||(22788364-22788508)
chr1 (242-303)||(30773042-30773103)
chr1 (143-224)||(6154604-6154683)
[»] chr2 (1 HSPs)
chr2 (90-241)||(16916344-16916491)
[»] chr6 (2 HSPs)
chr6 (97-236)||(5014070-5014213)
chr6 (100-225)||(16692978-16693108)
[»] chr7 (2 HSPs)
chr7 (90-235)||(46437312-46437453)
chr7 (159-225)||(38663019-38663084)
[»] chr5 (4 HSPs)
chr5 (90-236)||(424736-424876)
chr5 (97-236)||(18113738-18113878)
chr5 (190-225)||(25634440-25634475)
chr5 (98-135)||(17074657-17074694)
[»] chr3 (3 HSPs)
chr3 (100-244)||(26555473-26555615)
chr3 (100-155)||(52118379-52118434)
chr3 (189-225)||(2125280-2125316)
[»] chr8 (2 HSPs)
chr8 (100-154)||(28535248-28535302)
chr8 (190-243)||(28535191-28535244)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 18431611 - 18431755
Alignment:
Q  90 acaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataataataattaggct 189  Q
    ||||| |||||||||||| ||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||  ||| | |||||||||    
T  18431611 acaatacgttttgttttgtttgtgttgtgtgtgtttttcaatttccactttccttcccgtaccttatgtttatgcatataaaa--aattaaaattaggct 18431708  T
Q  190 agaatttgttgtggcagctgccacaccatgtttcactctacatccgc 236  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||    
T  18431709 agaatctggtgtggcagctgccacaccatgtttcactctacatccgc 18431755  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 100 - 242
Target Start/End: Original strand, 22788364 - 22788508
Alignment:
Q  100 ttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataa--taataattaggctagaatttg 197  Q
    |||||||| |||| | |||||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||   || |||||||| ||||| ||    
T  22788364 ttgttttgtttgtatggtgtgtgttttccaatttccactttccttcccttgccatatgtttatacatataaaaaaaaataaaaaattaggcaagaatctg 22788463  T
Q  198 ttgtggcagctgccacaccatgtttcactctacatccgctcctga 242  Q
     |||||||| |||||||||||||||||| || ||||||| |||||    
T  22788464 gtgtggcagttgccacaccatgtttcacactccatccgcccctga 22788508  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 30773103 - 30773042
Alignment:
Q  242 attaccatgttagatacctattaagtttttgtgttataattatagtaaatagtaaatatata 303  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  30773103 attaccatgttagataccgattaattttttgtgttataattatagtaaatagtaaatatata 30773042  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 6154604 - 6154683
Alignment:
Q  143 ttcccgtgccttatgtt--tatgcatataaaaataataataattaggctagaatttgttgtggcagctgccacaccatgtttca 224  Q
    |||||||||||||||||  |||||||||||||  ||    |||||||||||||| || ||| ||||||| ||||||||||||||    
T  6154604 ttcccgtgccttatgttattatgcatataaaacaaa----aattaggctagaatctggtgttgcagctgtcacaccatgtttca 6154683  T

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Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 90 - 241
Target Start/End: Original strand, 16916344 - 16916491
Alignment:
Q  90 acaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataataataattaggct 189  Q
    |||||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    || |||||||||    
T  16916344 acaatgtgttttgttttgtttgtattgtgtatattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaa----aaaaattaggct 16916439  T
Q  190 agaatttgttgtggcagctgccacaccatgtttcactctacatccgctcctg 241  Q
    ||||| || ||||||||||| |||||||||||||||||||||||||| ||||    
T  16916440 agaatctggtgtggcagctgacacaccatgtttcactctacatccgcccctg 16916491  T

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Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 97 - 236
Target Start/End: Original strand, 5014070 - 5014213
Alignment:
Q  97 gttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataataat----aattaggctaga 192  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||     ||||||| ||||    
T  5014070 gttttgttttgtttgtgttgtgtgtgttttccaatttccactttccttcccatgccttatgtttatgcatataaaaaaaaaaaacaaaaattaggttaga 5014169  T
Q  193 atttgttgtggcagctgccacaccatgtttcactctacatccgc 236  Q
    || || ||||||||||||||||||||||||||||||||||||||    
T  5014170 atctggtgtggcagctgccacaccatgtttcactctacatccgc 5014213  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 100 - 225
Target Start/End: Complemental strand, 16693108 - 16692978
Alignment:
Q  100 ttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaa-----aataataataattaggctagaat 194  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||     || || || |||||||| |||||    
T  16693108 ttgttttgtttgtgtggtgtgtgttttccaatttccactttccttcccttgccttatgtttatgcatataaacaaaaaaaaaaaaaaattaggcaagaat 16693009  T
Q  195 ttgttgtggcagctgccacaccatgtttcac 225  Q
     || |||||||||| ||||||||||||||||    
T  16693008 ctggtgtggcagctaccacaccatgtttcac 16692978  T

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Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 90 - 235
Target Start/End: Complemental strand, 46437453 - 46437312
Alignment:
Q  90 acaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataataataattaggct 189  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    || ||||||| |    
T  46437453 acaacgcgttttgttttgtttgtgttgtgtgtgttttccaatttccactttccttctcgtgccttatgtttatgcatataaaaa----aaaaattaggtt 46437358  T
Q  190 agaatttgttgtggcagctgccacaccatgtttcactctacatccg 235  Q
    | ||| |  |||||||||||||||||||||||||||||||||||||    
T  46437357 ataatcttgtgtggcagctgccacaccatgtttcactctacatccg 46437312  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 38663084 - 38663019
Alignment:
Q  159 ttatgcatataaaaataataataattaggctagaatttgttgtggcagctgccacaccatgtttcac 225  Q
    ||||||||||||||| || || ||| ||  |||||| || |||||||||||||||||||||||||||    
T  38663084 ttatgcatataaaaaaaaaaaaaat-agattagaatctggtgtggcagctgccacaccatgtttcac 38663019  T

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Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 90 - 236
Target Start/End: Original strand, 424736 - 424876
Alignment:
Q  90 acaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtt--tatgcatataaaaataataataattagg 187  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||    | |||||||||||  |||||||||||||  ||    |||||||    
T  424736 acaacgcgttttgttttgtttgtgttgtgtgtcttttccaatttccactttcc----cctgccttatgttattatgcatataaaacaaa----aattagg 424827  T
Q  188 ctagaatttgttgtggcagctgccacaccatgtttcactctacatccgc 236  Q
    ||||||| || |||||||||||||||||||||||||| | |||||||||    
T  424828 ctagaatctggtgtggcagctgccacaccatgtttcaatgtacatccgc 424876  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 236
Target Start/End: Original strand, 18113738 - 18113878
Alignment:
Q  97 gttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgt--ttatgcatat--aaaaataataat-aattaggctag 191  Q
    ||||||||||| ||||||||||||| |||| |||||||||||    ||||| || |||||||  |||   ||||  ||||| |||||| ||| |||||||    
T  18113738 gttttgttttgtttgtgttgtgtgtgtttttcaatttccact----ttcccatgtcttatgttattaaaaatataaaaaaaaaataataaataaggctag 18113833  T
Q  192 aatttgttgtggcagctgccacaccatgtttcactctacatccgc 236  Q
    ||| || ||||||| |||||||||||||||||| | |||||||||    
T  18113834 aatctggtgtggcaactgccacaccatgtttcaatgtacatccgc 18113878  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 25634440 - 25634475
Alignment:
Q  190 agaatttgttgtggcagctgccacaccatgtttcac 225  Q
    |||||||| |||||||||||||||||||||||||||    
T  25634440 agaatttggtgtggcagctgccacaccatgtttcac 25634475  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 17074694 - 17074657
Alignment:
Q  98 ttttgttttgattgtgttgtgtgtattttccaatttcc 135  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  17074694 ttttgttttggttgtgttgtgtgtattttccactttcc 17074657  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 100 - 244
Target Start/End: Complemental strand, 26555615 - 26555473
Alignment:
Q  100 ttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataat---aataattaggctagaattt 196  Q
    |||||||| |||||| |||| | |||||||||||||||||||||||||     ||||||||||||||||||||| ||    || || ||||| ||||| |    
T  26555615 ttgttttgtttgtgtggtgtttgttttccaatttccactttccttccc-----ttatgtttatgcatataaaaaaaaataaaaaaaataggcaagaatct 26555521  T
Q  197 gttgtggcagctgccacaccatgtttcactctacatccgctcctgatt 244  Q
    | ||||||||||||||||||||||||||| || ||||||| |||||||    
T  26555520 ggtgtggcagctgccacaccatgtttcacactccatccgcccctgatt 26555473  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 52118434 - 52118379
Alignment:
Q  100 ttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgcctta 155  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||    
T  52118434 ttgttttgtttgtgtggtgtgtgttttccaatttccactttccttcccttgcctta 52118379  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 2125316 - 2125280
Alignment:
Q  189 tagaatttgttgtggcagctgccacaccatgtttcac 225  Q
    |||||| || |||||||||||||||||||||||||||    
T  2125316 tagaatctggtgtggcagctgccacaccatgtttcac 2125280  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 154
Target Start/End: Complemental strand, 28535302 - 28535248
Alignment:
Q  100 ttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgcctt 154  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||||| ||||||    
T  28535302 ttgttttgtttgtgtggtgtgtgttttccaatttccactttccttcccttgcctt 28535248  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 28535244 - 28535191
Alignment:
Q  190 agaatttgttgtggcagctgccacaccatgtttcactctacatccgctcctgat 243  Q
    ||||| || ||||||||||||||||||||||||||| || ||||||| ||||||    
T  28535244 agaatctggtgtggcagctgccacaccatgtttcacactccatccgcccctgat 28535191  T

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