View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14034_low_38 (Length: 309)
Name: NF14034_low_38
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 2 - 295
Target Start/End: Original strand, 19890440 - 19890733
Alignment:
| Q |
2 |
gcgtgtcgaggtaattgaacaaattcaaagtgcatgtcatgtggggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatg |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19890440 |
gcgtgtcgaggtaattgaacaaattcaaagtgcatgtcatgtgggtggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatg |
19890539 |
T |
|
| Q |
102 |
attcatggaatccgtagttttcatgaacaagatgttgatgtaagaaaagagttttacactcgtgatttaaagaaaaaagttatgtatttctccaatggaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19890540 |
attcatggaatccgtagttttcatgaacaagatgttgatgtaagaaaagagttttacactcgtgatttaaagaaaaaagttatgtatttctccaatggaa |
19890639 |
T |
|
| Q |
202 |
ccttgtttagtggccaagctgctaattggagagatacaattggttttgctgttgctcctcatccattcaaaccaaatgaactaccatccatatg |
295 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19890640 |
ccttgtttagtggccaagctgctaattggagagatacaattggttttgctgttgctcctcatccattcaaaccaaatgaactaccatccatatg |
19890733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 2 - 281
Target Start/End: Original strand, 29462828 - 29463107
Alignment:
| Q |
2 |
gcgtgtcgaggtaattgaacaaattcaaagtgcatgtcatgtggggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatg |
101 |
Q |
| |
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|||||| ||||||||||| ||||||| ||||||||| |||| | |||||||||||||||| ||||||||||| ||||| ||| |||||||||||||||| |
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| T |
29462828 |
gcgtgtagaggtaattgaccaaattcgaagtgcatgccatgagtggggattttttcaggtgattaatcatgaaattcctattattgtcttggatgaaatg |
29462927 |
T |
|
| Q |
102 |
attcatggaatccgtagttttcatgaacaagatgttgatgtaagaaaagagttttacactcgtgatttaaagaaaaaagttatgtatttctccaatggaa |
201 |
Q |
| |
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||| |||||||| |||| |||||||||||||||| |||||||||||||||||||| || || |||||||||||||||||| ||||| ||| |||| | |
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| T |
29462928 |
attgatggaatctgtaggtttcatgaacaagatgccgatgtaagaaaagagttttatacacgggatttaaagaaaaaagtttcgtattactctaatgtac |
29463027 |
T |
|
| Q |
202 |
ccttgtttagtggccaagctgctaattggagagatacaattggttttgctgttgctcctcatccattcaaaccaaatgaa |
281 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||| ||||| |
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| T |
29463028 |
gcttgtttaatggacaaggtgctaattggagagatacatttggttttgctattgctcctgatccattcaatccagatgaa |
29463107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 275
Target Start/End: Original strand, 19844590 - 19844856
Alignment:
| Q |
9 |
gaggtaattgaacaaattcaaagtgcatgtcatgtggggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatg |
108 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| | |||||||||||||||| ||||||||||| |||||||| |||| |||||||| |||||||||| |
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| T |
19844590 |
gaggtaattggcaaaattcgaagtgcatgtcatgagtggggattttttcaggtgattaatcatgaaattcccatcaatgtattggatgagatgattcatg |
19844689 |
T |
|
| Q |
109 |
gaatccgtagttttcatgaacaagatgttgatgtaagaaaagagttttacactcgtgatttaaagaaaaaagttatgtatttctccaatggaaccttgtt |
208 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| |||||||||||||| || |||||||||| | |||||||| |||||||||||||| |||||| || |
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| T |
19844690 |
gaatccgtaactttcatgaacaagatgttaatgttagaaaagagttttatacgcgtgatttaagggaaaaagttgtgtatttctccaatacaaccttatt |
19844789 |
T |
|
| Q |
209 |
tagtggccaagctgctaattggagagatacaattggttttgctgttgctcctcatccattcaaacca |
275 |
Q |
| |
|
|| | | ||||||||| |||||||||||||| |||| || | |||||||||| |||||||||||||| |
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| T |
19844790 |
tactagtcaagctgctgattggagagatacagttggattcgttgttgctcctgatccattcaaacca |
19844856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 243
Target Start/End: Complemental strand, 19877593 - 19877396
Alignment:
| Q |
46 |
ggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatggaatccgtagttttcatgaacaagatgttgatgtaag |
145 |
Q |
| |
|
||||||||||||| || ||||||||||| || ||||| ||||||||||||||||||| | | ||| ||| |||||||||||||| | | || || |
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|
| T |
19877593 |
ggggattttttcaagtgattaatcatgaaatccccatctatgtcttggatgaaatgatcgaagaaattcgttcatttcatgaacaagaagcttctgagag |
19877494 |
T |
|
| Q |
146 |
aaaagagttttacactcgtgatttaaagaaaaaagttatgtatttctccaatggaaccttgtttagtggccaagctgctaattggagagatacaattg |
243 |
Q |
| |
|
|| || || ||| | | | ||||| |||||||| |||| ||||| |||||||| |||| | || ||||| ||| |||| ||||||||||||||||||| |
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|
| T |
19877493 |
aagagtgtattataatagagattttaagaaaaatgttaggtattactccaatgcaaccctattcagtggacaacctgcaaattggagagatacaattg |
19877396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 3 - 274
Target Start/End: Complemental strand, 49465352 - 49465081
Alignment:
| Q |
3 |
cgtgtcgaggtaattgaacaaattcaaagtgcatgtcatgtggggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatga |
102 |
Q |
| |
|
||||| || |||||| | ||||||| ||||||||| |||| | |||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |
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|
| T |
49465352 |
cgtgtagatgtaattcatcaaattcgaagtgcatgccatgagtggggattttttcaggtgattaatcatgaaattcccattaccgtcttggatgaaatga |
49465253 |
T |
|
| Q |
103 |
ttcatggaatccgtagttttcatgaacaagatgttgatgtaagaaaagagttttacactcgtgatttaaagaaaaaagttatgtatttctccaatggaac |
202 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||| | |
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|
| T |
49465252 |
ttgatggaatccgtagctttcatgaacaagatgctgatgtaagaaaagagttttacacgcgtgatttaaagaaaaaagttatgtattattctaatgtaca |
49465153 |
T |
|
| Q |
203 |
cttgtttagtggccaagctgctaattggagagatacaattggttttgctgttgctcctcatccattcaaacc |
274 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
49465152 |
cttgtttagtgggcaagctgctaattggagagatacatttggttttgctgttgctcctcatccattcaaacc |
49465081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 46 - 159
Target Start/End: Original strand, 8349216 - 8349329
Alignment:
| Q |
46 |
ggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatggaatccgtagttttcatgaacaagatgttgatgtaag |
145 |
Q |
| |
|
||||||||||| | || |||||||||| ||||||||| |||| |||||||||| ||| ||||||| ||||| ||||||||||||||| || ||||| |
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|
| T |
8349216 |
ggggattttttaaagtgattaatcatggaattcccattaatgtattggatgaaacaattgatggaattcgtaggtttcatgaacaagatcccgaagtaag |
8349315 |
T |
|
| Q |
146 |
aaaagagttttaca |
159 |
Q |
| |
|
|||| | ||||||| |
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|
| T |
8349316 |
aaaacaattttaca |
8349329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 41238475 - 41238564
Alignment:
| Q |
46 |
ggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatggaatccgtagttttcatgaacaagatg |
135 |
Q |
| |
|
|||||||||| || || || ||||||| |||||| || |||| |||||||| ||||| ||||||| |||| |||||||||||||||| |
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|
| T |
41238475 |
ggggatttttccaagtgatcaatcatggtattccacttcatgttttggatgagatgatcaatggaatttgtagatttcatgaacaagatg |
41238564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 3 - 281
Target Start/End: Original strand, 1093093 - 1093371
Alignment:
| Q |
3 |
cgtgtcgaggtaattgaacaaattcaaagtgcatgtcatgtggggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatga |
102 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||| |||| | |||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |
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|
| T |
1093093 |
cgtgtagaggtaattggccaaattcaaagtgcatgccatgagtggggattttttcagataattaatcatgaaattcccattaatgtcttggatgaaatga |
1093192 |
T |
|
| Q |
103 |
ttcatggaatccgtagttttcatgaacaagatgttgatgtaagaaaagagttttacactcgtgatttaaagaaaaaagttatgtatttctccaatggaac |
202 |
Q |
| |
|
|| ||||||| ||| ||||| |||||||||| | ||||||||||||| ||||| || || ||||| || |||||||||||||||| ||| |||| | |
|
|
| T |
1093193 |
ttgatggaattagtaagtttcacgaacaagatgctaatgtaagaaaagatttttatacgcgggatttgaacaaaaaagttatgtattactctaatgtact |
1093292 |
T |
|
| Q |
203 |
cttgtttagtggccaagctgctaattggagagatacaattggttttgctgttgctcctcatccattcaaaccaaatgaa |
281 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
1093293 |
cttgtttagtggaaaacctgctaattggagagatacatttggttttgctattgctcctcattcattcaaaccagatgaa |
1093371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 26168459 - 26168547
Alignment:
| Q |
46 |
ggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatggaatccgtagttttcatgaacaagat |
134 |
Q |
| |
|
||||||||||||| || |||||||||| |||||||||||||| |||||||||| ||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
26168459 |
ggggattttttcaagtgattaatcatggaattcccattgatgtattggatgaaacaattgatggaattcgtaggtttcatgaacaagat |
26168547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 25224922 - 25224810
Alignment:
| Q |
47 |
gggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatggaatccgtagttttcatgaacaagatgttgatgtaaga |
146 |
Q |
| |
|
|||||||||||| || |||||||||| ||||| ||| |||| |||||||||| ||| ||||||| ||||| ||||||||||||||| ||| |||||| |
|
|
| T |
25224922 |
gggattttttcaagtgattaatcatggaattccaattaatgtattggatgaaacaattaatggaattcgtaggtttcatgaacaagatcctgaagtaaga |
25224823 |
T |
|
| Q |
147 |
aaagagttttaca |
159 |
Q |
| |
|
||| | ||||||| |
|
|
| T |
25224822 |
aaacaattttaca |
25224810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 26396045 - 26396157
Alignment:
| Q |
21 |
caaattcaaagtgcatgtcatgtggggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatggaatccgtagtt |
120 |
Q |
| |
|
||||||| || ||||||| | | | ||||||||||||| || ||||||||||| ||||||||| ||| |||||||||||| || ||||| | ||||| | |
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|
| T |
26396045 |
caaattcgaactgcatgtaaggagtggggattttttcaagtgattaatcatgaaattcccatttgtgtattggatgaaatgcttgatggatttcgtaggt |
26396144 |
T |
|
| Q |
121 |
ttcatgaacaaga |
133 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26396145 |
ttcatgaacaaga |
26396157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 33769168 - 33769073
Alignment:
| Q |
46 |
ggggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatggaatccgtagttttcatgaacaagatgttgatg |
141 |
Q |
| |
|
||||||||||||| || |||||||||| |||||| || ||| |||||||| |||||| |||||||||||| |||||||||||||||| ||||| |
|
|
| T |
33769168 |
ggggattttttcaagtgattaatcatggtattccggttattgttttggatgagatgattagtggaatccgtaggtttcatgaacaagatgctgatg |
33769073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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