View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_39 (Length: 309)
Name: NF14034_low_39
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 40203740 - 40203467
Alignment:
| Q |
17 |
gagaagaatggaggtataataagtaacccaagcaaagagaatcataacaataggaccagcaatccatccaagttgagcaatagcccaagctagagacagc |
116 |
Q |
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| T |
40203740 |
gagaagaatggaggtataataagtaacccaagcaaagagaatcataacaataggaccagcaatccatccaagttgagcaatagcccaagctagagacagc |
40203641 |
T |
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| Q |
117 |
actccagaccctatcacggctgttattacatgtgcacttgcagtccaagcagttcctgtgtttttcaagaaacatattagaatttgagttgagtctaaaa |
216 |
Q |
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| T |
40203640 |
actccagaccctatcacagctgttattacatgtgcacttgcagtccaagcagttcctgtgtttttcaagaaacatattagaatttgagttgagtctaaaa |
40203541 |
T |
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| Q |
217 |
tcagtgcgaacaaaataaaa--caacgaaagagnnnnnnngagacttaattaccggttcgtttgacacgaccat |
288 |
Q |
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| T |
40203540 |
tcagtgcgaacaaaataaaaaacaatgaaagagaaaaaaagagacttaattaccggttcgtttgacacgaccat |
40203467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 40199576 - 40199380
Alignment:
| Q |
18 |
agaagaatggaggtataataagtaacccaagcaaagagaatcataacaataggaccagcaatccatccaagttgagcaatagcccaagctagagacagca |
117 |
Q |
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| T |
40199576 |
agaagaatggaagtgtagtaagtaacccaagcaaagagaatcatgacaataggaccagcaatccatccaagttgagcaatagcccaagatagagacagca |
40199477 |
T |
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| Q |
118 |
ctccagaccctatcacggctgttattacatgtgcacttgcagtccaagcagttcctgtgtttttcaagaaacatattagaatttgagttgagtctaa |
214 |
Q |
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| T |
40199476 |
ctccagaccctaccacagctgttattacatgtgcacttgcagtccaagcagttcctgtgtttttcataaaacctattaaaatttgggtcgagtctaa |
40199380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 40207895 - 40207711
Alignment:
| Q |
18 |
agaagaatggaggtataataagtaacccaagcaaagagaatcataacaataggaccagcaatccatccaagttgagcaatagcccaagctagagacagca |
117 |
Q |
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|||||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
40207895 |
agaagaatggcagtgtagtaagtaacccaagcaaagagaatcatgacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaa |
40207796 |
T |
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| Q |
118 |
ctccagaccctatcacggctgttattacatgtgcacttgcagtccaagcagttcctgtgtttttcaagaaacatattagaatttg |
202 |
Q |
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| T |
40207795 |
ctccagaccctaccacagctgttattacatgtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttg |
40207711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 51719868 - 51719957
Alignment:
| Q |
72 |
ccagcaatccatccaagttgagcaatagcccaagctagagacagcactccagaccctatcacggctgttattacatgtgcacttgcagtc |
161 |
Q |
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| T |
51719868 |
ccagcaatccaacccatttgagctattgcccatgcaagtgataacactcctgatcctatcactgctgttatgatatgtgcacttgcagtc |
51719957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 163
Target Start/End: Original strand, 10299760 - 10299851
Alignment:
| Q |
72 |
ccagcaatccatccaagttgagcaatagcccaagctagagacagcactccagaccctatcacggctgttattacatgtgcacttgcagtcca |
163 |
Q |
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| T |
10299760 |
ccagcaatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcacagctgtgattatgtgtgcacttgctgtcca |
10299851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 39429174 - 39429248
Alignment:
| Q |
68 |
aggaccagcaatccatccaagttgagcaatagcccaagctagagacagcactccagaccctatcacggctgttat |
142 |
Q |
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| T |
39429174 |
aggaccagcaatccaacctagctgagcaatggcccaagctaaagacaacacccctgatcctataacagctgttat |
39429248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 161
Target Start/End: Complemental strand, 6249434 - 6249341
Alignment:
| Q |
68 |
aggaccagcaatccatccaagttgagcaatagcccaagctagagacagcactccagaccctatcacggctgttattacatgtgcacttgcagtc |
161 |
Q |
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| T |
6249434 |
aggaccagcaacccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctgttattatgtgtgaaattgcagtc |
6249341 |
T |
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