View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_low_4 (Length: 564)

Name: NF14034_low_4
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_low_4
NF14034_low_4
[»] chr5 (3 HSPs)
chr5 (269-547)||(7980506-7980766)
chr5 (59-239)||(7980805-7980980)
chr5 (346-394)||(34093878-34093926)
[»] chr6 (1 HSPs)
chr6 (314-382)||(17920490-17920558)
[»] chr7 (1 HSPs)
chr7 (326-389)||(45874965-45875028)
[»] chr4 (1 HSPs)
chr4 (347-389)||(29938862-29938904)
[»] chr3 (2 HSPs)
chr3 (328-386)||(44324211-44324269)
chr3 (330-375)||(7258696-7258741)
[»] chr1 (1 HSPs)
chr1 (341-375)||(52017776-52017810)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 269 - 547
Target Start/End: Complemental strand, 7980766 - 7980506
Alignment:
Q  269 acaagtggacaacacatacttgaataaacacacacggggaggagaaaatatggtgattcgggttcaaacttggggttccacataaaatgtcctcacagcc 368  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||  | |||||||||||||||||||||||        
T  7980766 acaagtggacaacacatactcgaataaacacacacggggaggggaaaatatggtgattcgggttcaaacccgaggttccacataaaatgtcctcacc--- 7980670  T
Q  369 aaaccaccaggctgtaacaaccgggagtgttctcaccatcaagaagactcagtgtatgctgaatcaaaatattaagttatagatcgaggagttaaaaaat 468  Q
                   | |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  7980669 ---------------atcaacggggagtgttctcaccatcaagaagactgagtgtatgctgaatcaaaatattaatttatagatcgaggagttacaaaat 7980585  T
Q  469 ttcaagaattgacaagatcttttatttgttgatcttcagataaagctttactttgtaacaaggcttaggatgcttaata 547  Q
    |||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7980584 ttcaagaattaacaagatcttttatctgtcgatcttcagataaagctttactttgtaacaaggcttaggatgcttaata 7980506  T

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Target: chr5; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 59 - 239
Target Start/End: Complemental strand, 7980980 - 7980805
Alignment:
Q  59 atggtattctgaaaatatcaacaaa-gaaattaatcatttgtaaaaagtgttctaaattaaaagcattgtattgctaataaaaatacaatccacaaaagt 157  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7980980 atggtattctgaaaatatcaacaaaagaaattaatcatatgtaaaaagtgttctaaattaaaagcattgtattgctaataaaaatacaatccacaaaagt 7980881  T
Q  158 agattactaatgctatggcagaaacagaaagcagtacaactacaatttatagaacacacataatataagttgttcggaacac 239  Q
    ||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7980880 agattactaatgctatggca------gaaagcagtacaactacaatttatagaacacacataatataagttgttcggaacac 7980805  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 394
Target Start/End: Original strand, 34093878 - 34093926
Alignment:
Q  346 ccacataaaatgtcctcacagccaaaccaccaggctgtaacaaccggga 394  Q
    |||||| ||||||||||||||||||||||| ||||||||||||| ||||    
T  34093878 ccacattaaatgtcctcacagccaaaccacaaggctgtaacaacgggga 34093926  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 382
Target Start/End: Complemental strand, 17920558 - 17920490
Alignment:
Q  314 aaatatggtgattcgggttcaaacttggggttccacataaaatgtcctcacagccaaaccaccaggctg 382  Q
    ||||||||||  ||||||||||||||| | ||||||||||||| |||||||||||||||||| ||||||    
T  17920558 aaatatggtgcctcgggttcaaacttgagattccacataaaatttcctcacagccaaaccactaggctg 17920490  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 389
Target Start/End: Complemental strand, 45875028 - 45874965
Alignment:
Q  326 tcgggttcaaacttggggttccacataaaatgtcctcacagccaaaccaccaggctgtaacaac 389  Q
    ||||| || ||| |||||||||||||||| ||||||| ||| ||||||||  ||||||||||||    
T  45875028 tcgggatcgaacctggggttccacataaagtgtcctcgcagtcaaaccactgggctgtaacaac 45874965  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 347 - 389
Target Start/End: Complemental strand, 29938904 - 29938862
Alignment:
Q  347 cacataaaatgtcctcacagccaaaccaccaggctgtaacaac 389  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||    
T  29938904 cacataaaatgtcctcacaaccaaaccactaggttgtaacaac 29938862  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 328 - 386
Target Start/End: Complemental strand, 44324269 - 44324211
Alignment:
Q  328 gggttcaaacttggggttccacataaaatgtcctcacagccaaaccaccaggctgtaac 386  Q
    |||||||||||  ||  ||||||||||||| ||||||||||||||||| ||| ||||||    
T  44324269 gggttcaaactgtggactccacataaaatgacctcacagccaaaccactaggttgtaac 44324211  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 7258741 - 7258696
Alignment:
Q  330 gttcaaacttggggttccacataaaatgtcctcacagccaaaccac 375  Q
    |||||||| |||| |||||||||||||||||||| ||| |||||||    
T  7258741 gttcaaacctgggattccacataaaatgtcctcagagctaaaccac 7258696  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 375
Target Start/End: Complemental strand, 52017810 - 52017776
Alignment:
Q  341 gggttccacataaaatgtcctcacagccaaaccac 375  Q
    |||||||||| ||||||||||||||||||||||||    
T  52017810 gggttccacacaaaatgtcctcacagccaaaccac 52017776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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