View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_low_40 (Length: 307)

Name: NF14034_low_40
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_low_40
NF14034_low_40
[»] chr5 (10 HSPs)
chr5 (13-292)||(39454368-39454647)
chr5 (237-292)||(39450953-39451008)
chr5 (237-292)||(39480326-39480381)
chr5 (237-292)||(39486412-39486467)
chr5 (237-292)||(39458455-39458510)
chr5 (105-181)||(39471821-39471897)
chr5 (237-289)||(43312677-43312729)
chr5 (237-267)||(39475459-39475489)
chr5 (237-294)||(39464693-39464750)
chr5 (233-294)||(39470916-39470977)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 292
Target Start/End: Original strand, 39454368 - 39454647
Alignment:
Q  13 attatactaattctttgtcagcacataattttcatgatccatatacacatgacatatataaatgatgataaatgatactgattcnnnnnnnnggtaaata 112  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||    
T  39454368 attatactaattctttttcagcacataattttcatgatccatatacacatgacatatataaatgatgataaatgatactgattcttttttttggtaaata 39454467  T
Q  113 aacgatgctaattctgtacactaattcagtttgttcctatgtaataaaacatgtacatcaaatatcaaattcatagagtcacacacacacttctaccacc 212  Q
    || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39454468 aatgatgctaattctgtacactaattcattttgttcctatgtaataaaacatgtacatcaaatatcaaattcatagagtcacacacacacttctaccacc 39454567  T
Q  213 aaaaaagagagagccactcacaacatgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttc 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39454568 aaaaaagagagagccactcacaacatgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttc 39454647  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 39450953 - 39451008
Alignment:
Q  237 atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttc 292  Q
    ||||||||||||||||||||||||||||||| |||||||||  ||||| |||||||    
T  39450953 atgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttc 39451008  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 39480326 - 39480381
Alignment:
Q  237 atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttc 292  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| ||| |||||||    
T  39480326 atgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttc 39480381  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 39486412 - 39486467
Alignment:
Q  237 atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttc 292  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| ||| |||||||    
T  39486412 atgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttc 39486467  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 39458510 - 39458455
Alignment:
Q  237 atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttc 292  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| ||| |||||||    
T  39458510 atgaagaaagcagaagtggtgattatctcttcacctggtgttggtcatctagtttc 39458455  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 39471821 - 39471897
Alignment:
Q  105 ggtaaataaacgatgctaattctgtacactaattcagtttgttcctatgtaataaaacatgtacatcaaatatcaaa 181  Q
    |||||||||| ||| |||||| ||||||||||||||   |  |||||| |||||||||||||| ||||||| |||||    
T  39471821 ggtaaataaatgatactaattatgtacactaattcatcctaatcctatataataaaacatgtatatcaaatgtcaaa 39471897  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 43312729 - 43312677
Alignment:
Q  237 atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagt 289  Q
    |||||||||  |||||||||||||||||||||||| ||||| || ||||||||    
T  43312729 atgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagt 43312677  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 267
Target Start/End: Original strand, 39475459 - 39475489
Alignment:
Q  237 atgaagaaagcagaagtggtgtttatccctt 267  Q
    |||||||||||||||||||||||||||||||    
T  39475459 atgaagaaagcagaagtggtgtttatccctt 39475489  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Complemental strand, 39464750 - 39464693
Alignment:
Q  237 atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttctg 294  Q
    ||||||||||||||||| ||||||||||||| ||| | ||| || ||| |||||||||    
T  39464750 atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctg 39464693  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 39470977 - 39470916
Alignment:
Q  233 caacatgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttctg 294  Q
    ||||||||||||||  ||||||||||||||||||| ||| | ||| || ||| |||||||||    
T  39470977 caacatgaagaaagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctg 39470916  T

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