View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_41 (Length: 302)
Name: NF14034_low_41
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 39796957 - 39797068
Alignment:
| Q |
18 |
ccaatgacatccatttctaaaccattcaatggcacaatcttccacacacatcattcatcttcttttcctcatcaatttcgacaacacctccattctcacg |
117 |
Q |
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| T |
39796957 |
ccaatgacatccatttctaaaccgttcaatggcacaatcttccacacacatcattcatcttcttttcctcatcaatttcgacaacacctccattctcacg |
39797056 |
T |
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| Q |
118 |
tagtagtactac |
129 |
Q |
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|||||||||||| |
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| T |
39797057 |
tagtagtactac |
39797068 |
T |
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Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 39797156 - 39797229
Alignment:
| Q |
217 |
tccgccacaaaagcatcaaaatctcagcacacgccgttcctcctcttcctcaaaatcacacagtcgttcatctc |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
39797156 |
tccgccacaaaagcatcaaaatctcagcacacgccgttcctcctcttcctcaaaatcacaccgtcgttcgtctc |
39797229 |
T |
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