View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_low_42 (Length: 301)

Name: NF14034_low_42
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_low_42
NF14034_low_42
[»] chr5 (16 HSPs)
chr5 (1-283)||(3299452-3299734)
chr5 (1-283)||(3392345-3392627)
chr5 (118-271)||(1849896-1850049)
chr5 (118-263)||(1163690-1163832)
chr5 (115-274)||(39879742-39879898)
chr5 (115-262)||(40418223-40418367)
chr5 (115-274)||(38987633-38987789)
chr5 (115-274)||(39726346-39726502)
chr5 (115-264)||(39168784-39168930)
chr5 (115-260)||(39399801-39399943)
chr5 (1-96)||(40418404-40418496)
chr5 (1-96)||(38987826-38987918)
chr5 (1-96)||(39726545-39726637)
chr5 (1-96)||(39879941-39880033)
chr5 (1-83)||(1163594-1163676)
chr5 (1-83)||(1850063-1850145)
[»] chr4 (3 HSPs)
chr4 (115-256)||(25912292-25912430)
chr4 (1-96)||(25912160-25912252)
chr4 (121-187)||(44444772-44444838)


Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 3299734 - 3299452
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtttgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  3299734 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaattttggtgatcaaaatggcagcaggaaggtttgta 3299635  T
Q  101 tctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299634 tctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattat 3299535  T
Q  201 ttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttggcagcagcagcttcagcagcaacaacagca 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299534 ttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttggcagcagcagcttcagcagcaacaacagca 3299452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 3392627 - 3392345
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtttgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  3392627 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttcggcataactaattttggtgatcaaaatggcagcaggaaggtttgta 3392528  T
Q  101 tctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392527 tctactcctccagaagacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattat 3392428  T
Q  201 ttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttggcagcagcagcttcagcagcaacaacagca 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392427 ttccaatatctttcacacgagcaaccatggcatcagctaaacgatattttttggcagcagcagcttcagcagcaacaacagca 3392345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 118 - 271
Target Start/End: Complemental strand, 1850049 - 1849896
Alignment:
Q  118 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 217  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1850049 caggtcataaccaagagcatggtcaccaggttttaaaatacgactaagatgagtcctgatttgaaaagttgtgtgattattatttccaatatctttcaca 1849950  T
Q  218 cgagcaaccatggcatcagctaaacgatattttttggcagcagcagcttcagca 271  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||    
T  1849949 cgagcaactatggcattagctaaacgatattttttggcagcagcagcatcagca 1849896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 118 - 263
Target Start/End: Original strand, 1163690 - 1163832
Alignment:
Q  118 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttcaca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||||| |||    
T  1163690 caggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaa---gtgtgattattatttccaatatctttgaca 1163786  T
Q  218 cgagcaaccatggcatcagctaaacgatattttttggcagcagcag 263  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||    
T  1163787 cgagcaactatggcattagctaaacgatattttttggcagcagcag 1163832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 115 - 274
Target Start/End: Complemental strand, 39879898 - 39879742
Alignment:
Q  115 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  39879898 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 39879802  T
Q  215 acacgagcaaccatggcatcagctaaacgatattttttggcagcagcagcttcagcagca 274  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||||||  ||||||||    
T  39879801 acacgagcaaccacagcatcagctaaacgatattttttggcggcagcagcagcagcagca 39879742  T

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Target: chr5; HSP #6
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 115 - 262
Target Start/End: Complemental strand, 40418367 - 40418223
Alignment:
Q  115 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||   | |||||||||||||||||||    
T  40418367 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc 40418271  T
Q  215 acacgagcaaccatggcatcagctaaacgatattttttggcagcagca 262  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||||    
T  40418270 acacgagcaaccacagcatcagctaaacaatattttttggcagcagca 40418223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 115 - 274
Target Start/End: Complemental strand, 38987789 - 38987633
Alignment:
Q  115 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 214  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  38987789 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 38987693  T
Q  215 acacgagcaaccatggcatcagctaaacgatattttttggcagcagcagcttcagcagca 274  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||||||  ||||||||    
T  38987692 acacgagcaaccacagcatcagctaaacgatattttttggcggcagcagcagcagcagca 38987633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 115 - 274
Target Start/End: Complemental strand, 39726502 - 39726346
Alignment:
Q  115 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 214  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||   | |||||||||| ||||||||    
T  39726502 agacaggtcataaccaagagcatggtcaccgggttttaagatacgaccgagatgagtcctgatttgaaaagttgtg---tcattatttccagtatctttc 39726406  T
Q  215 acacgagcaaccatggcatcagctaaacgatattttttggcagcagcagcttcagcagca 274  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||||||  ||||||||    
T  39726405 acacgagcaaccacagcatcagctaaacgatattttttggcggcagcagcagcagcagca 39726346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 115 - 264
Target Start/End: Complemental strand, 39168930 - 39168784
Alignment:
Q  115 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 214  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||||||||||||   | ||||||||||| ||||| |    
T  39168930 agacaagtcataaccaagagcatagtcaccggattttaaaatatgacctagatgagttttgatttgaaaagttgtg---tcattatttccaaaatcttcc 39168834  T
Q  215 acacgagcaaccatggcatcagctaaacgatattttttggcagcagcagc 264  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  39168833 acacgagcaaccacggcatcagctaaccgatattttttggcagcagcagc 39168784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 115 - 260
Target Start/End: Complemental strand, 39399943 - 39399801
Alignment:
Q  115 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 214  Q
    ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||| |||||||||||||||||   | ||||||||||| || || |    
T  39399943 agacaagtcataaccaagagcatagtcaccggattttaaaatatgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaaaattttcc 39399847  T
Q  215 acacgagcaaccatggcatcagctaaacgatattttttggcagcag 260  Q
    ||||||||||||| ||||||||||||||| |||||||| |||||||    
T  39399846 acacgagcaaccacggcatcagctaaacggtattttttagcagcag 39399801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 40418496 - 40418404
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 96  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||    
T  40418496 ataatcagattcccacttatcatgaagagcaacaactctaccattctcttc---ggcataactaatcttggtgatcaaaatggcagcaggaaggtt 40418404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 38987918 - 38987826
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 96  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| | ||   |||||||||||||||| |||||||||||||||||||||||||    
T  38987918 ataatcagattcccacttatccttgacagcaacaactctaccattcacttc---ggcataactaatcttgctgatcaaaatggcagcaggaaggtt 38987826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 39726637 - 39726545
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 96  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| | ||   |||||||||||||||| |||||||||||||||||||||||||    
T  39726637 ataatcagattcccacttatccttgacagcaacaactctaccattcacttc---ggcataactaatcttgctgatcaaaatggcagcaggaaggtt 39726545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 39880033 - 39879941
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 96  Q
    |||||||||||||||||||||||  ||||||||||||||||||||| | ||   |||||||||||||||| |||||||||||||||||||||||||    
T  39880033 ataatcagattcccacttatccttgacagcaacaactctaccattcacttc---ggcataactaatcttgctgatcaaaatggcagcaggaaggtt 39879941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 1163594 - 1163676
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatgg 83  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||  ||| ||||||||||||| ||||||||||    
T  1163594 ataaccagattcccacttatcctgaacaggaacaactctaccattctcctctttagcaaaactaatcttggtaatcaaaatgg 1163676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 1850145 - 1850063
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatgg 83  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||||||||  ||| ||||||||||||| ||||||||||    
T  1850145 ataatcagattcccacttatcctgaacaggaataactctaccattctcctctttagcaaaactaatcttggtaatcaaaatgg 1850063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 115 - 256
Target Start/End: Original strand, 25912292 - 25912430
Alignment:
Q  115 agacaggtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagttgtgtgattattatttccaatatctttc 214  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||   | |||||||||||||||||||    
T  25912292 agacaggtcataaccaagagcatggtcatcgggttttagaatacgaccaagatgagtcctgatttgaaaagttgtg---tcattatttccaatatctttc 25912388  T
Q  215 acacgagcaaccatggcatcagctaaacgatattttttggca 256  Q
    |||||||||||||   ||||||||||||||||||||||||||    
T  25912389 acacgagcaaccacatcatcagctaaacgatattttttggca 25912430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 25912160 - 25912252
Alignment:
Q  1 ataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcaggaaggtt 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  25912160 ataatcagattcccacttatcctgaacagcaacaactctaccatt---ctcttcggcataactaatcttggtgatcaaaatggcagcatgaaggtt 25912252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 121 - 187
Target Start/End: Original strand, 44444772 - 44444838
Alignment:
Q  121 gtcataaccaagagcatggtcaccgggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 187  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44444772 gtcataaccaagagcatagtcaccaggttttaaaatacgaccaagatgagtcttgatttgaaaagtt 44444838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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