View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14034_low_45 (Length: 279)

Name: NF14034_low_45
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14034_low_45
NF14034_low_45
[»] chr4 (1 HSPs)
chr4 (171-279)||(9499034-9499142)
[»] chr6 (2 HSPs)
chr6 (174-279)||(19058791-19058891)
chr6 (244-278)||(29355313-29355347)
[»] chr8 (3 HSPs)
chr8 (177-279)||(20293145-20293242)
chr8 (177-279)||(21079776-21079873)
chr8 (238-279)||(13955753-13955794)
[»] chr7 (3 HSPs)
chr7 (238-279)||(15660379-15660420)
chr7 (174-235)||(47790230-47790291)
chr7 (177-279)||(18846129-18846226)
[»] chr2 (1 HSPs)
chr2 (239-279)||(23218993-23219033)
[»] chr1 (1 HSPs)
chr1 (239-279)||(20039601-20039641)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 171 - 279
Target Start/End: Complemental strand, 9499142 - 9499034
Alignment:
Q  171 aaggtattatgtaactggaaaacggtgagctgaaagctcttacaatgataacaacagaaaactgaaatgaaaggataaaccagacttcagagaactccta 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9499142 aaggtattatgtaactggaaaacggtgagctgaaagctcttacaatgataacaacagaaaactgaaatgaaaggataaaccagagttcagagaactccta 9499043  T
Q  271 ccagagcta 279  Q
    |||||||||    
T  9499042 ccagagcta 9499034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 279
Target Start/End: Original strand, 19058791 - 19058891
Alignment:
Q  174 gtattatgtaactggaaaacggtgagctgaaagctcttacaatgataacaacagaaaactgaaatgaaaggataaaccagacttcagagaactcctacca 273  Q
    ||||||| ||||||||||| |||||||| ||||||||||||||||| | |||||||     || |||||||||||||||||    |||||||||||||||    
T  19058791 gtattatttaactggaaaatggtgagctcaaagctcttacaatgatgaaaacagaa-----aattgaaaggataaaccagagggaagagaactcctacca 19058885  T
Q  274 gagcta 279  Q
    ||||||    
T  19058886 gagcta 19058891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 278
Target Start/End: Original strand, 29355313 - 29355347
Alignment:
Q  244 gataaaccagacttcagagaactcctaccagagct 278  Q
    ||||||||||| |||||||||||||||||||||||    
T  29355313 gataaaccagagttcagagaactcctaccagagct 29355347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 20293145 - 20293242
Alignment:
Q  177 ttatgtaactggaaaacggtgagctgaaagctcttacaatgataacaacagaaaactgaaatgaaaggataaaccagacttcagagaactcctaccagag 276  Q
    |||| |||| |||||| |||||||| || ||||||| ||| || | ||||||||||||||     ||||||||||||| |||||||||||||||||||||    
T  20293145 ttatttaacaggaaaatggtgagctcaaggctcttataattatgaaaacagaaaactgaa-----aggataaaccagagttcagagaactcctaccagag 20293239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 21079776 - 21079873
Alignment:
Q  177 ttatgtaactggaaaacggtgagctgaaagctcttacaatgataacaacagaaaactgaaatgaaaggataaaccagacttcagagaactcctaccagag 276  Q
    |||| |||| |||||| |||||||| || ||||||| ||| || | ||||||||||||||     ||||||||||||| |||||||||||||||||||||    
T  21079776 ttatttaacaggaaaatggtgagctcaaggctcttataattatgaaaacagaaaactgaa-----aggataaaccagagttcagagaactcctaccagag 21079870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 13955753 - 13955794
Alignment:
Q  238 tgaaaggataaaccagacttcagagaactcctaccagagcta 279  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  13955753 tgaaaggattaaccagagttcagagaactcctaccagagcta 13955794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 15660420 - 15660379
Alignment:
Q  238 tgaaaggataaaccagacttcagagaactcctaccagagcta 279  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  15660420 tgaaaagataaaccagagttcagagaactcctaccagagcta 15660379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 47790230 - 47790291
Alignment:
Q  174 gtattatgtaactggaaaacggtgagctgaaagctcttacaatgataacaacagaaaactga 235  Q
    ||||||| ||||||||||| | |||||| ||||||||||||| ||| | |||||||||||||    
T  47790230 gtattatttaactggaaaatgatgagctcaaagctcttacaaagatgaaaacagaaaactga 47790291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 18846129 - 18846226
Alignment:
Q  177 ttatgtaactggaaaacggtgagctgaaagctcttacaatgataacaacagaaaactgaaatgaaaggataaaccagacttcagagaactcctaccagag 276  Q
    |||| ||||||||||  | |||||| ||||||||||||| ||| | ||||||||  ||||| ||     ||||||||| ||| |||||||||||||||||    
T  18846129 ttatttaactggaaagtgatgagctcaaagctcttacaaagatgaaaacagaaagttgaaaaga-----taaaccagagttctgagaactcctaccagag 18846223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 23218993 - 23219033
Alignment:
Q  239 gaaaggataaaccagacttcagagaactcctaccagagcta 279  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  23218993 gaaatgataaaccagagttcagagaactcctaccagagcta 23219033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 279
Target Start/End: Complemental strand, 20039641 - 20039601
Alignment:
Q  239 gaaaggataaaccagacttcagagaactcctaccagagcta 279  Q
    |||| ||||||||||| || |||||||||||||||||||||    
T  20039641 gaaatgataaaccagagtttagagaactcctaccagagcta 20039601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University