View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_48 (Length: 270)
Name: NF14034_low_48
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 44 - 254
Target Start/End: Complemental strand, 3410890 - 3410676
Alignment:
| Q |
44 |
cacatgtagaaaaggaaaagaagtttgcttgtttcgttttgttctctttgattctactatctttgttcaatttttaatattcactatactccccatgtga |
143 |
Q |
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| T |
3410890 |
cacacgtagaaaaggaaaagaagtttgcttgtttcgttttgttctctttgattctactatctttgttcaatttttaatattcactatactccccatgtga |
3410791 |
T |
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| Q |
144 |
taaaataaaagtaaaagggatccaaaaaattaagtgtttttagactaaatacatttgatttttgtttgttcacttatgttta----tactttgttacaaa |
239 |
Q |
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| T |
3410790 |
taaaataaaagtaaaagggatccaaaaaattaagtgtttttagactaaatacatttgatttttgtttgttcacttatgtttatacgtactttgttacaaa |
3410691 |
T |
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| Q |
240 |
gagagtacataaaac |
254 |
Q |
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| T |
3410690 |
gagagtacataaaac |
3410676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3410958 - 3410912
Alignment:
| Q |
1 |
attggcattgtggtctatggagacgcacacataatctgcatgccaca |
47 |
Q |
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| T |
3410958 |
attggcattgtggtctatggagacgcacacataatctgcatgccaca |
3410912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 4243478 - 4243570
Alignment:
| Q |
106 |
ttgttcaatttttaatattcactatactccccatgtgataaaataaaagtaaaagggatccaaaaaattaagtgtttttagactaaatacatt |
198 |
Q |
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| T |
4243478 |
ttgttcaatttttaatattcattatactctccttgtaacaaaataaaagccaaaaggatttagaaatttaaatgtttttagactaaaaacatt |
4243570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 4250625 - 4250680
Alignment:
| Q |
109 |
ttcaatttttaatattcactatactccccatgtgataaaataaaagtaaaagggat |
164 |
Q |
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| T |
4250625 |
ttcaatttttaatattcactatactcctcttgtaacaaaataaaagtcaaaaggat |
4250680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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