View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_52 (Length: 258)
Name: NF14034_low_52
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_52 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 3 - 258
Target Start/End: Complemental strand, 3411272 - 3411017
Alignment:
| Q |
3 |
cacagagatatgcattctttcagctcagggtttagttggcattgcctcctttcaacaatcaggagtcattgttacttatgaggttgtacattttccatcc |
102 |
Q |
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| T |
3411272 |
cacagagatatgcattctttcagctcagggtttagttggcattgcctcctttcaacaatcaggagtcattgttacttatgaggttgtacattttccatcc |
3411173 |
T |
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| Q |
103 |
ttttattagtatccattcaataactaagtatccaataatgaaaaatttatgtttgtattctattaattggaagagatacggaatctgatgtaagatgtgt |
202 |
Q |
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| T |
3411172 |
ttttattagtatccattcaataactaagtatccaataatgaaaaatatatgtttgtattatattaattggaagagatatggaatctgatgtaagatgtgt |
3411073 |
T |
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| Q |
203 |
ttatttcatgcgcataaattcttaagctagcatttggcatgggacaatgttgtcct |
258 |
Q |
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| T |
3411072 |
ttatttcatgcgcataaattcttaagctagcatttggcatgggacaatgttgtcct |
3411017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 4243082 - 4243213
Alignment:
| Q |
4 |
acagagatatgcattctttcagctcagggtttagttggcattgcctcctttcaacaatcaggagtcattgttacttatgaggttgtacattttccatc-c |
102 |
Q |
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|||||||| | ||||||||| ||||| ||||| || ||||||| |||| |||| | |||| ||||||||||||||||| ||||||||| |||| |
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| T |
4243082 |
acagagatgtccattctttctgctcatggtttggtaggcattgtctcccttcatcgggaaggaaggattgttacttatgaggtagtacattttacatctt |
4243181 |
T |
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| Q |
103 |
ttttattagtatccattcaataactaagtatc |
134 |
Q |
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| T |
4243182 |
ttttattagaatccattcaataactacgtatc |
4243213 |
T |
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