View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_53 (Length: 258)
Name: NF14034_low_53
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 45014430 - 45014686
Alignment:
| Q |
1 |
cttaagtataataatgagtatttacatttgtttatgtttttagctactacatagtttaggagcaaggcaattgcagctttttgggctgggtccaatggga |
100 |
Q |
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| T |
45014430 |
cttaagtataataatgagtatttacatttgtttatgtttttagctactacatagtttaggagcaaggcaattgcagctttttgggctgggtccaatggga |
45014529 |
T |
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| Q |
101 |
tgcattccacttcaaagggtacttactacaacaggaaattgtcgagaaagtgtaaacaaactggctcttagctttaataaagcttcaagtgaactaatag |
200 |
Q |
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| T |
45014530 |
tgcattccacttcaaagggtacttactacaacaggaaattgtcgagaaagtgtaaacaaactggctcttagctttaataaagcttcaagtgaactaatag |
45014629 |
T |
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| Q |
201 |
atgacttggtgaagcaacttcctaactcaaattatagatttggagatgcatatgatg |
257 |
Q |
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| T |
45014630 |
atgacttggtgaagcaacttcctaactcaaattatagatttggagatgcatatgatg |
45014686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 257
Target Start/End: Complemental strand, 11666833 - 11666615
Alignment:
| Q |
39 |
tttagctactacatagtttaggagcaaggcaattgcagctttttgggctgggtccaatgggatgcattccacttcaaagggtacttactacaacaggaaa |
138 |
Q |
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| T |
11666833 |
tttaggtactgcatagcctaggagcaaggcaactgatggtgtttgggcttggcccaatgggctgtattccccttcaaagagtgcttagtacatctgggaa |
11666734 |
T |
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| Q |
139 |
ttgtcgagaaagtgtaaacaaactggctcttagctttaataaagcttcaagtgaactaatagatgacttggtgaagcaacttcctaactcaaattataga |
238 |
Q |
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| T |
11666733 |
ttgtcaagaaaaaacaaacaagttagctcttagctttaacaaagcttcaagtaaggtagtaaatgatttggggaagcaacttcccaatgcaagctacaga |
11666634 |
T |
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| Q |
239 |
tttggagatgcatatgatg |
257 |
Q |
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| T |
11666633 |
tttggtgatgcttatgatg |
11666615 |
T |
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