View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_56 (Length: 252)
Name: NF14034_low_56
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_56 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 7733 - 7511
Alignment:
| Q |
13 |
ccacaaagccatcaacattttgaagagagacatatctaatattggaattgaagcaagaactgaatttaacaacacaacccttcctccaaaactaacaagg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7733 |
ccacaaagccatcaacattttgaagagagacatatctaatattggaattgaagcaagaactgaatttaacaacacaacccttcctccaaaactaacaagg |
7634 |
T |
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| Q |
113 |
tagtttcatcaagatcgaagcctcgtttgtaatgcatccacgaccagtctctaaattgacgtcttccgtgagttttcacccaccggtgagccaaagtaga |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7633 |
tagtttcatcaagatcgaagcctcgtttgtaatgcatccacgaccagtctctaaattgacgtcttccgtgagttttcacccaccggtaagccaaagtaga |
7534 |
T |
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| Q |
213 |
taaactctatgtttcccctttta |
235 |
Q |
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|||||| ||||||||||||||| |
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| T |
7533 |
taaacttgatgtttcccctttta |
7511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 23384735 - 23384957
Alignment:
| Q |
13 |
ccacaaagccatcaacattttgaagagagacatatctaatattggaattgaagcaagaactgaatttaacaacacaacccttcctccaaaactaacaagg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23384735 |
ccacaaagccatcaacattttgaagagagacatatctaatattggaattgaagcaagaactgaatttaacaacacaacccttcctccaaaactaacaagg |
23384834 |
T |
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| Q |
113 |
tagtttcatcaagatcgaagcctcgtttgtaatgcatccacgaccagtctctaaattgacgtcttccgtgagttttcacccaccggtgagccaaagtaga |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23384835 |
tagtttcatcaagatcgaagcctcgtttgtaatgcatccacgaccagtctctaaattgacgtcttccgtgagttttcacccaccggtaagccaaagtaga |
23384934 |
T |
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| Q |
213 |
taaactctatgtttcccctttta |
235 |
Q |
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|||||| ||||||||||||||| |
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| T |
23384935 |
taaacttgatgtttcccctttta |
23384957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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