View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14034_low_57 (Length: 251)
Name: NF14034_low_57
Description: NF14034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14034_low_57 |
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Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 663072 - 662846
Alignment:
| Q |
18 |
cattcacaggttaaggtatgggatgttcaagaaaagaagtgtcttggagtgttaacagggcacacaggaagtgtgaaatctatttcttctcatccaacta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
663072 |
cattcacaggttaaggtatgggatgttcaagaaaagaagtgtcttggagtgttaacagggcacacaggaagtgtgaaatctatttcttctcatccaacta |
662973 |
T |
|
| Q |
118 |
atcctggtaagatttctttgtgtagacatttctatgcttctacaatgcactggattttatgtaatcacaaatatattagtaattgaca-nnnnnnnatct |
216 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
662972 |
atcccggtaagatttctttgtgtatacatttctatgcttctacaatgcactggattttatgtaatcacaaatatattagtaattgacattttttttatct |
662873 |
T |
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| Q |
217 |
ccaaacttgcagatatcttagtctctg |
243 |
Q |
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||||||||||||||||||||||||||| |
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| T |
662872 |
ccaaacttgcagatatcttagtctctg |
662846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 908869 - 909094
Alignment:
| Q |
18 |
cattcacaggttaaggtatgggatgttcaagaaaagaagtgtcttggagtgttaacagggcacacaggaagtgtgaaatctatttcttctcatccaacta |
117 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
908869 |
catttacaggttagggtatgggatgttcaagaaaagaagtgtcttggagtgttaacagggcacacaggaagtgtgaaatctatttcttctcatccaacta |
908968 |
T |
|
| Q |
118 |
atcctggtaagatttctttgtgtagacatttctatgcttctacaatgcactggattttatgtaatcacaaatatattagtaattgacannnnnnnatctc |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
908969 |
atcctggtaagatttctttgtgtatgcatttctatgcttttacaatgtactggattttatgtaatcacaaatatattagcaattgacattcttttatctc |
909068 |
T |
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| Q |
218 |
caaacttgcagatatcttagtctctg |
243 |
Q |
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||||||| ||||||| | |||||||| |
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| T |
909069 |
caaacttacagatatttcagtctctg |
909094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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